Array 1 825-1632 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSZP01000019.1 Pseudomonas aeruginosa strain AUS183 IPC201_19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 825 28 100.0 32 ............................ CGTCGCGCATGAATGTCTCCCACGGCGATCCG 885 28 100.0 32 ............................ ATGTCAGGCGCCTACTACAACGAAATCGACCC 945 28 100.0 32 ............................ GATGAGCAACGCAGTTGCACAGCGGCAGGAAA 1005 28 100.0 32 ............................ GTGCACCGGAGCGAAAAGACTGCCGCCAACGA 1065 28 100.0 32 ............................ ACCGTCACGCGGGTGCCAGCACTCTCCGGCGC 1125 28 100.0 32 ............................ TTGGAGCCAGTGTTCTGGCCAGTGCGATTCTT 1185 28 100.0 32 ............................ ATCGCCGCCAGTACCGGGCGTGCCACCACCAT 1245 28 100.0 32 ............................ TTACAGCCGCCTTGCAAACCCGTCCCGCCACC 1305 28 100.0 32 ............................ TGCATCGCGCGCCCCGCGGGAGCAACCGGCTG 1365 28 100.0 32 ............................ TTATCCATCGCTGCGCGCCCACACGCCCAGGG 1425 28 100.0 32 ............................ TGGCGGGCCGATTTATGAATCAGCCCCCTTTC 1485 28 100.0 32 ............................ TTGTCCGGGCAACTGCACCCCACCAAGAAGCC 1545 28 100.0 32 ............................ TCCTACGCCTCTATCGTGAAGAACATCATCGT 1605 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 823-2951 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSZP01000022.1 Pseudomonas aeruginosa strain AUS183 IPC201_22.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 823 28 100.0 32 ............................ GAAACCAGTCGGTCGATATCCTCATGCGTCAT 883 28 100.0 32 ............................ GTAATTCAGGCCGGAGAGTCGGCCACCATCCT 943 28 100.0 32 ............................ AAGGCTGTGCTGCGTGCTGCTGAGGAGTATTT 1003 28 100.0 32 ............................ TTTTCGTTGGTGACAGTGGTCCAGACGCGCTC 1063 28 100.0 32 ............................ AAAACGCCGGATACCTGACCCGCAACGGCCGC 1123 28 100.0 32 ............................ ATCCGCCACGGACTTATAACAACCGAAGTACG 1183 28 100.0 32 ............................ GTAACCAATAACCAACGCCGCACCGACAAGCA 1243 28 100.0 32 ............................ TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 1303 28 100.0 32 ............................ ATCTGATCGCTCGCCCAGTGGTTCAACTGATG 1363 28 100.0 32 ............................ GAGCATCGATCGCCTGACTCGGTTGCCTGAAT 1423 28 100.0 32 ............................ GATTGGACAGGCGCTCAGCAAGATTACGTTTC 1483 28 100.0 32 ............................ ACCACCCGTACCGCCACCATCGCCGCCAGTAC 1543 28 100.0 32 ............................ GCCCTTCTGGCGACGGCTCCCTCGTCCATCCG 1603 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGGACTTGTTC 1663 28 100.0 32 ............................ ACCTTGTTGACCGCCCAACGGGCGAAGTTCGG 1723 28 100.0 32 ............................ TATCGCAACCTCGCTGGTGTCGAGGTCTACGC 1783 28 100.0 32 ............................ CGTTCGGTAAGGACAAGGTTCCGGGCTTTGAC 1843 28 100.0 32 ............................ TATGCGGCCAACATGACCGCGATGGTCGCTAT 1903 28 100.0 33 ............................ GTGATGGCTATCGAGATCAACCGCCAGTCGTAC 1964 28 100.0 32 ............................ TTCAGTATCAGCCAGCGTAGGACCTCGGTGTC 2024 28 100.0 32 ............................ CAAAGCAACGCGCCGGGAAGGCCCTGCGAGAA 2084 28 100.0 32 ............................ TGGTCGTTGGTGCGTAGGATCCGCCCACGCTC 2144 28 100.0 32 ............................ TGGACCTCCCGAAGGTCGCCTCGCAGGAATGC 2204 28 100.0 32 ............................ GTAGGGGCAGGCCTGTAGACGTTCGCCGCGGT 2264 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 2324 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 2384 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 2444 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 2504 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 2564 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 2624 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 2684 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 2744 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 2804 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 2864 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 2924 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGACCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12640-11479 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSZP01000022.1 Pseudomonas aeruginosa strain AUS183 IPC201_22.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12639 28 100.0 32 ............................ TTGATATCTACAGCTAACATCACCATGCGATT 12579 28 100.0 32 ............................ CAGTGGTTGCCGGTGCCGGAGTTCTTTACGCA 12519 28 100.0 32 ............................ TTATGCGAGCGCAAGAAGCACCAGTGCTGTCG 12459 28 100.0 32 ............................ CGCATAGCGACCGCAGCCAAGCGGCAGCAGGG 12399 28 100.0 32 ............................ TGATCGCGTAGAGCCAAGGGTTACCGCTACGC 12339 28 100.0 24 ............................ TGGCGCACGACGGAAGTGCTGGCG Deletion [12288] 12287 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 12227 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 12167 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 12107 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 12047 28 100.0 32 ............................ GTCAGGGCCTCGACCAGATCAAGCACGAGAGT 11987 28 100.0 33 ............................ CTGAAGGCAGTAATCTTGATATGACTACCGGTG 11926 28 100.0 32 ............................ TCGATCCGAACCGGAACGGTGATGTTCTTGAG 11866 28 100.0 32 ............................ TGGTCCTGTGGCCCCGGACCATGAAAGAGGGG 11806 28 100.0 32 ............................ ACATGAACCGGAATCGCAGGCCGAGCAATGAG 11746 28 100.0 32 ............................ AGGATCGAACGGCGCGAACTGTTTCACGTCAT 11686 28 100.0 32 ............................ AGGAACGCAACCAGGGCGCAGACGGCAACAAC 11626 28 100.0 32 ............................ ATCCGTCACCGGAATTTGCGCGTTGGCCGTGC 11566 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 11506 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //