Array 1 46181-44760 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAI01000007.1 Anaerobranca californiensis DSM 14826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 46180 31 100.0 34 ............................... TTGCTTTATCCCATCCCACCACCGGCGCATAAAG 46115 31 100.0 33 ............................... TTCGTACTGTGTTGTCACTGCTACCACTGTATG 46051 31 100.0 37 ............................... TCGCTCCAACGTTCTTCAAACCGTTTGTAAATCTGTG 45983 31 100.0 34 ............................... TCCTGAAGATTTATTAAATTTAAGACCAGACGAG 45918 31 100.0 34 ............................... ATCGGCAGTATCAATTGTTGCTTCTGGATGAAAG 45853 31 100.0 36 ............................... AACCAGTAGAAGGTTGGGTCCGAGTGAAAAAGATAG 45786 31 100.0 37 ............................... CTATCGAAGGAGTAAACGATACACATACTGCCATAGG 45718 31 100.0 36 ............................... TCGTTTTCCTCTTGTAGTTGCTCTACCTGTGCAGAG 45651 31 100.0 35 ............................... TGGATAATTTAGTCAAAAATATAGCTTTATCTATG 45585 31 100.0 33 ............................... CGGTAATTCTATTATTTGCCCTTGAGTGAGAGG 45521 31 100.0 37 ............................... ACCGTATACCTTTACCCTGCTGATACGGTTAACCTAG 45453 31 100.0 35 ............................... CTACAAACCCTACACGGTCAATCTCGGTTACATGG 45387 31 100.0 36 ............................... TGGTCCTTAATGTTAGGAGAGAATGTAGTTATTTAG 45320 31 100.0 35 ............................... ATATTCTCCAGTGTCCGGATCGCCTTCCATGTAGG 45254 31 100.0 35 ............................... ATATTGTCCATCTGCTATCTTCTGGGCTATTCTGG 45188 31 100.0 34 ............................... GTCATAATCTACTAATTCGTGCAATCCTAAAGTG 45123 31 100.0 35 ............................... ATGTAGGCAGATTCTAATGCCTCAAATGCTGTATG 45057 31 100.0 37 ............................... TAGGCTACAGTAGAGCATCTGGTCCACTTGATCCGGG 44989 31 100.0 36 ............................... CAATGTATTGTCAAACGTGGCAATAAATTCCATTAG 44922 31 100.0 36 ............................... CCGATAGCGGTAAAGTGTTTTTTACTGTACCACAAG 44855 31 96.8 34 ............................T.. CCGTCTTAAAAGTTGTTCAATATAATTAGAAAGG 44790 31 93.5 0 .......T...................C... | ========== ====== ====== ====== =============================== ===================================== ================== 22 31 99.6 35 TCGCACCCCCTGTGGGTGCGTGGATTGAAAT # Left flank : AGGAGAGATATAATATGATGGTTCTTATAACATATGATGTAAACACTCAAACATTAGAGGGTCAAAAGAGATTAAGGAATATTGCTAAATATTGCCAAGATTATGGACAAAGAGTCCAAAACTCTGTATTTGAGTGCTTATTAGACCCTGCCCAATTTGCCCAGCTAAGACATAAATTGGAAAGTATTATGGATAAAGAAAGGGATAGTATAAGGTATTACTTTTTAGGAGCAAATTGGAAAAATAGAGTTGAACATGTAGGTGCTAAGAAAACATATGATCCAGAGGGAGTAATAGTTATATAGGTATTTAAAATTAGTAGGATTTTTAACTTCACAATCATAAATGAAATAACTAATCTAGTTAAATGCGAATGTGTAGTGAACATAAATGTCAAAATAAAATATTAGCTATTTTGGGGTATTAAAGGATACTTTTAAAAAAGGTTCGCAGATTTACTTTTATAATACCTTTAATACAAGTATTTTTAACTTATACAG # Right flank : ATAATTGTTGGGCTGGAGTACAAATTAGTAGAAACATTTTCTTTATACAATAAAAATGTTATAATTATAATTATGATAATATTTATTAAAATAAATTTGTTGGAGGTGTGTACGAGTGGTTACTATTAGTGAAATAAGAGAAGCTATATCAGATATAGTTTCAAAATACCCTATAAAGAGGATATCTCTATTTGGGTCCTACGCTAGTGGCACGGCTAATCATGATAGTGATATAGACTTACTCGTGGAGTTTTTTCATTCTAACATATCGTTAATAACTTTATCGTCTATCAAATGTGAAATTGAGGACAGGCTTAATAAAAAAATTGATCTTATACATTACCCAGTTGATGATTCTGCTTTTATAAACATAGATAAGGTAGTGGATATTTATATACAATAGGGACTACCGAATAATTAGAAAAATATTAGAGGAAATTGATGTTATATAAGAAATTATTAGTGATTGTGATAATCTCAGCTTTCTAGAAGATGAAAGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCCTGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 92419-93575 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAI01000006.1 Anaerobranca californiensis DSM 14826, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 92419 30 100.0 36 .............................. CCAATAAGCACTGCAAGATACCATTTTTCGTACCCT 92485 30 100.0 36 .............................. AATTTTGTTAATGCACAAATACAAGACCAATATCAA 92551 30 100.0 36 .............................. CAGTACCTTCTTCACTCACTTCCACATCGAACACAA 92617 30 100.0 36 .............................. GAGGTACCACTATCTTTGATTGTGATGTAGCATTAA 92683 30 100.0 36 .............................. TCACCCCCTTTCTTTGCAATATGTTAAATTATCTGG 92749 30 100.0 37 .............................. ACATTTTTTCGTCACACCTAGCCACACGGATATAATC 92816 30 100.0 35 .............................. GTTCAAAATAAACCGGGGTTCCTGCAGGGAACTCC 92881 30 100.0 36 .............................. GAGATATAGACCAGAGTGCTGAATCTATCCACAATT 92947 30 100.0 37 .............................. TAATAATTCACTATATTTTCTCCTTGGTGTCCCAAGG 93014 30 100.0 37 .............................. GATTTTTCTTTCAAAAACCTGGCCCCGAAATCTCGGG 93081 30 100.0 37 .............................. TCCACAATTTCCACAGAAATGTCAGAGGCTGGAGTAA 93148 30 100.0 35 .............................. ATTTTCTGATAATTCAAAAAATCATATTGTAGGAA 93213 30 100.0 37 .............................. CTTCTTTGTGGACCTTCCACGCCCAGTGGTACGACCA 93280 30 100.0 35 .............................. ATTTTCTGATAATTCAAAAAATCATATTGTAGGAA 93345 30 100.0 37 .............................. CTTCTTTGTGGACCTTCCACGCCCAGTGGTACGACCA 93412 30 100.0 37 .............................. GGTAGGTATTCTAGAGCCATCGGAAAAAGTTTTGCAC 93479 30 100.0 37 .............................. CTTCTTTGTGGACCTTCCACGCCCAGTGGTACGACCA 93546 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 99.8 36 ATTTCTAGCCTACCTATGAGGGATTGAAAC # Left flank : AAACCCTTGTCAAAAAAGCACTAGAAACCAATGCAGATGCCATTTTAGTATCACAGGTAGTAACACAAAAAAATGTCCATATACCTAATTTAACGGAATTAGTGGAAATGTTAGAAGCAGAAGGGATAAGGGATAAAGTAGTATTAATAGCTGGAGGCCCTAGAATTACCCATGAACTGGCATTAGAATTAGGATACGATGCAGGGTTTGGACCAGGAACAACACCACCAGATGTAGCCACCTTTATAGTAAAGGAAATGGTAAGGAGAAATTTAAAGTAATATAACATACATTTTAAAAAGTAAATAGTAAAACAAAAACTGTCGTCGACCTCCAATAGTGTAAAAATCCATGGAGATCGACGACAAAATGAAAACACTTAAAAATCCCTTAAGAACAGGCCTTAAGGGATTTTTAATACACATTTTAGTTTACATAACACCAAAAATTTAATTGTTGACAAAATTTAAAAAATCTAGTATTATTAAGACATGTAATGG # Right flank : GAAAAAGGCTATATAGTATTAAAAGGACTAAACCTGATTTAGGTCTAGTCCTTTTAGCTTTTGATTACAAAAAATGTAATTAAAGATTGTATAGTTTATCAAAGGATAGTAAAATAGAATTAATAATTTTTTAATATTCAAAAAAGAGAGGTGTTTTAAATGAAAATAGTTATAATCGGTGGTGTGGCTGCAGGGATGTCTGCAGCAGCCAAAGCTAAAAGGGTGAATAAAGATGTAGAAGTTGTGGTATATGAAAAGGGTGATTTTGTTTCATACGGTGCTTGTGGATTACCATATTTTTTAGCTAGCGAAGATGATCACAATATTTTAATTGCTAGGACAAAGGAAGAATTTGAAAAACAGGGGATCAAGGTATTTTTAAATCATGAAGTTGTGAAGGTAAGTCCTGATAAAAAAGAAGTTTTTGTTAAAAATCTAAAAAGTGGTGAAACTTTTTCCGATAGTTACGATAAGTTATTTATCGCAACTGGTGCTAAGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 6476-6704 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRAI01000041.1 Anaerobranca californiensis DSM 14826, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6476 30 100.0 37 .............................. TAATATCTCATCTTCCTCATCATGCATCACCCTTAAA 6543 30 100.0 36 .............................. TAATTTCCCGGTACTAAATAATAATTTTGTATAATA 6609 30 100.0 36 .............................. AATGTCGTCTGGGTTTTCTAGGGATGAAACAGCTTC 6675 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 ATTTCTAGCCTACCTATGAGGGATTGAAAC # Left flank : AATACCTACCTTTTATAACTAAATGGTGATAAAATGTTTGTGATATTAGTTTATGATGTAGAACAAAAGCGGGTTAACAAGGTATTAAAAACCTGTAGAAAGTATTTATATTGGGTACAAAACTCTGTTTTAGAAGGTGAGATTACTGAAAGTAAATTAACAAAATTAAAAATGGAGTTAGAAAAAATAATAAAAAAAGACAAAGATTCTGTGATTATCTATAGATTTCCAACTAAAAAGTATCAAGTAATAGAGACAATTGGTATTAAGAAAGGAGGAGAAGATAATATAATATAAAAATGTAAATACATAAATATAAACTGTCGTCGATCGTCAATAGCGTAAAAATCCCTGGAGATCGACGACAAACAAAAAATACTAAAAAATCCCTTAAGAATAGGCCTTAAGGGATTTTTTATACACACATTAGTTTACATAAAATCAAAAATTTAATTCTTGACAAAATTTAAAAAATCAAGTAAAATCAAGGTAAGTTATGG # Right flank : | # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //