Array 1 50-436 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCZ01000009.1 Moraxella catarrhalis strain 3331584D 3331584D_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 50 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 110 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 170 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 229 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 289 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 349 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 409 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : CACAGGTCGCTTAGAAAGTTGAGCTGTATCCTCTGATTCTCTTATTGATC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGTATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2634-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXCZ01000004.1 Moraxella catarrhalis strain 3331584D 3331584D_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2633 28 100.0 32 ............................ GATTTCGGTAGGATTTGGGGCGGTTTCCACTG 2573 28 100.0 32 ............................ AAGAGTGAATACAGTAAGGCACTAGTAAAATT 2513 28 100.0 32 ............................ ACCCAATCCGCCGCCCATCACAGGCCTTGGAA 2453 28 100.0 32 ............................ ACTGTGCATGATATTGATATTTTGGAGATATG 2393 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 2333 28 100.0 32 ............................ ATCAGAATTGAACAAATTGTTGGTAAGCAAAA 2273 28 100.0 32 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTT 2213 28 100.0 32 ............................ TTGAATGCATTGCCTAGGATGGTTCGCTCATC 2153 28 100.0 32 ............................ TAGAAAGCGTCCTAGCGTGCGTTATATTGCCG 2093 28 100.0 32 ............................ CACGGCTCTCATGAAAACACCGCTCCAGTCAT 2033 28 100.0 33 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGTG 1972 28 100.0 33 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTTC 1911 28 100.0 32 ............................ GTAAACTTTACGCCCAATGTAGCGACTATTTT 1851 28 100.0 33 ............................ AGTATGGAATCGGCAACTACTCAGCTTGGCTAT 1790 28 100.0 32 ............................ ACAGGCAAGAATACTTATCATTTTGGGCATTG 1730 28 100.0 32 ............................ CAATCATTAATGCGTTGGCGGTGGCGTTTTTT 1670 28 100.0 32 ............................ TAACCAACTGAGCTATGAGCCCTTAAAAAAAT 1610 28 100.0 32 ............................ AAAAACTGCAAGCACTTGGAATATTGATTTTC 1550 28 100.0 32 ............................ TTTATCACAATGCGTCAAACACAAGAAGCATT 1490 28 100.0 33 ............................ ATAAAAGTGCTGGTAATAGCGATGTAACAGCAG 1429 28 100.0 32 ............................ AAAAGCGTGCAAGTAGAATCTAATTTGCCCAA 1369 28 100.0 33 ............................ GCTGATGTTGCTTTCAATTGTGCCGATTTTGCC 1308 28 100.0 32 ............................ ATACATTGCCACCAATATCAGATAGACTTAAA 1248 28 100.0 32 ............................ TGTGCCAAGTCCTGGTACAAGCCCTGATACTT 1188 28 100.0 32 ............................ CATACAAAATTCATTAAAAATAAGCTCTTGTT 1128 28 100.0 32 ............................ TTTATTTTTCGATATTTTGTGCATTTTACACT 1068 28 100.0 33 ............................ GCCCAAGGGGTTTTTAGCACATACACGCCGTCA 1007 28 100.0 32 ............................ TTCGCCTGCGTTTTGACTTGCCTGTATTTTTG 947 28 100.0 32 ............................ GCTCGGATAAGCTTTGGTTTGTCGTTGTTAGC 887 28 100.0 32 ............................ AATGCTTGATACTGAATATTTTAGAGATTTTG 827 28 100.0 32 ............................ TCTAGGCGTTGTTTTTGAAACACTTTGGCAAT 767 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 707 28 100.0 33 ............................ ATGTTCTCAGTGATAACACGCCCAACATCGATC 646 28 100.0 32 ............................ ACCGACCCGCTGTTGATATTACTTTTTCAGCA 586 28 100.0 32 ............................ GCATTGAGCATTGATTTTTTCACGCACTTTAG 526 28 100.0 32 ............................ TCTTCACTGGTACGAATAAACATCCAGCTATC 466 28 100.0 32 ............................ AGTGATAGGGTATTTTCCTGCCACTTTCAAAT 406 28 100.0 32 ............................ TCTTCACTGGTACGAATAAACATCCAGCTATC 346 28 100.0 32 ............................ AATAGATTTTTTAAAAGTTTATTGGTTGTTTT 286 28 100.0 32 ............................ ACCCAACCCATAGCGTTCGGCAGTGCATAGGT 226 28 100.0 32 ............................ TCTTGACCACAGTTTACGCACGCCGATTGGCA 166 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 106 28 100.0 32 ............................ AATTCACGGATTGATGAGGTATGAGACCCCAC 46 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 44 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATTACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATACTAACTCTTCACGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //