Array 1 982404-983896 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUQC01000001.1 Salmonella enterica strain 15E434 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 982404 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 982465 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 982526 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 982587 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 982648 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 982709 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 982770 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 982831 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 982892 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 982953 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 983014 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 983075 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 983136 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 983197 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 983258 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 983319 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 983381 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 983442 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 983503 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 983564 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 983625 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 983686 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 983747 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 983808 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 983869 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1000028-1001992 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUQC01000001.1 Salmonella enterica strain 15E434 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1000028 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1000089 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1000150 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1000211 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1000272 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1000333 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1000394 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1000456 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1000517 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1000578 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1000639 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1000700 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1000761 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1000822 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1000883 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1000944 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1001005 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1001066 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1001127 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1001188 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1001249 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1001311 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1001414 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1001475 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1001536 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1001597 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1001658 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1001719 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1001780 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1001841 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1001902 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1001963 29 96.6 0 A............................ | A [1001989] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //