Array 1 6580-6183 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000152.1 Streptomyces sp. XY431 P412contig230.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================ ================== 6579 28 82.8 156 .....G....T..........C-....A. TGACCCCGTGTTGTCCGCGGACAACACCCCGGCGCCACCACCGTCTGCCACGATGGATCCCGCTCCTTGACACCTCGACAGACCAGCCCGGACCACGACCTCCGGCAGCCAGGTCACGGAACGGCAAAGCCGTGAGAACAGTGCAGGTCGCGAAGG 6395 29 100.0 32 ............................. TCCTTCGGCTCGCGCTTCCGGCGTGCTGCGGT 6334 29 100.0 32 ............................. GAAACCCGCACCACCCCCGCGCCTGGCCCGTG 6273 29 96.6 32 ....................A........ CTGCACGTGGAGCCGCTTCTCGGCCTGATCTC 6212 29 79.3 0 ...........AGGC........G.T... | T [6186] ========== ====== ====== ====== ============================= ============================================================================================================================================================ ================== 5 29 91.7 63 GTCCTCCCCGCGCAGGCGGGGGTCAGCCG # Left flank : CCGCCGTCCCGTCCGAGACCGCGGCGAGCAGTTCGTCGCCCTCGACGCACAGCCAACTGCTGTGCTCCCACGCCCACGCCCACGACCCGTACCGGCCGGCGGTGACCACGTAGGCGTCGTCCTCGAAGAGGATGTCGCCGAAATCCTCGCGGAACGCAGCGCTACTCCGTTCGGCGAGTGTGGCGGGGTCCGCCCCCATCCGCTCCAGGAGCCGACGCGGAGTGAGGCCACGGGCGAACGTGACACTCACCAGCGGCAGGTCCCTCCCGTACATCCAGCCCAGGCCACTCATCCGAACCCCTCCACGGTATCGATCGCCTACCCCCCGGTGAGGCTAGACCACCCCGACGACACGGCCACCGATCCAGCCGCCCCGCGACCCGCCAGCAACAGGCCGACGACCCACCAGAAGACCGACCGGAACCCGCCCCACAGCCGGTGACGCCCTCCACGCGCGGGAGTCGGCCGGAGACCCCGAACCGGGCGCGGTCGGTGGTCAA # Right flank : CGATGCTCTGGGTGGGGAACCCGCCGCCGGGCTGCTCCTTGCACCCGCGGGGTCAGCCTTTATGGGCGACGACCAGCAGAGGTCTTTGTGGTCGGTGGAGATGATTCCTTGCCCTGCGACGACTCGGACTCAGGGGTGCTGCTTCTCCCGAGCGCCCGGCCGGGTCGCTACGATCTGCTCATGGATGGTCACGAGACGGCGTTTCAGTCCCTCGATGGCACTGCTCTCTTCGGCACCGTGTGCCCTACAGATGTACGGGGACCGGTTGCGGTGCTGGTTCACGGGTCGGGGGTGACCCGGGAGGAGAGCGGGTTCTTCGCGCGCCTGGCCGCCGGCCTGGCTGCCTCTGGTGTGACCAGCCTGCGGTTCGACCTTCGGGCGCACGGAGCCAGCGGCGGGCGCGAGTCGGAGTTGACTATCGCCTCGGTGGCCAATGACATCCGTGCGGCCGGCGACCACCTGCGCTCGCATGTCGGCCAGCCGGGGCCGGTGCACGTGAT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-3, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2564-2839 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000208.1 Streptomyces sp. XY431 P412contig280.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 2564 29 100.0 32 ............................. CCGACCGCGAGCAGCAGCTCGCGCACCGCCGG 2625 29 100.0 32 ............................. GTCACAGGGAACACCTGAGATGCGCAGCGGGC 2686 29 100.0 32 ............................. GCCACCGCGGCCGACGTCCTCGCCCGGGTGAA 2747 29 89.7 35 ...........GTC............... AAGGACTGGAAGACCCTCATCCCCTTCGCCAGGTC 2811 29 72.4 0 .........A.GTC...A.....G.T..C | ========== ====== ====== ====== ============================= =================================== ================== 5 29 92.4 33 GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Left flank : CCTACAAGGGCGCTCGTGTCGATGTGGCCTCCGGGTCCAAGCCGGAGGCCGAGACCAGGGTCGAAGATGCCGAGGCTGCACACGAGATCGTCCGTGCGCTCGGATTCGTTCCGCGCATTCAGTTCGAGAAGCGGTGCCGCAACTACGACTTCACGGAGAACGGTCGGACGTTCCTCGCAACCCTGGTCCGTGTCCCTGAGATCGACGGAACGTTCGTCGAGCTGGAGACTGCTGCCAGCACCGACGACCTCTCCGAGGCGCTGGCCAGTGTGCGCTCGGTTCTCGCCTCGCTCGGCATCAACGATGCGGACCTGACGACCGAGCAGTACACGGACGCGGTGTCCGCTGCTCGGCCGTAGCCGTAGCCGTTGCCAGTTCGGCCGTCTGCGCCCGGGCAGGTCCCGCTCGTCGGTATGGTCCCCCTCAACACTTTGAGCATCCCCGGGGGGCCTCCCCGCAGGCGCAGCCGTGGATACGGCAACCGCACCCCTCGCAGGGGT # Right flank : CTGCTCCCGGGCAGCGCCGACGTCGACCAGGTGCTGCTTCCCGCGTTCGCGGGGATGATGCCTTGAGCACGTTGCCGATCCAGCCCGGCAGGGTCTGCTCCGCGCAGGCTGGGGTGAGCCGTTGAGCAGTCAGCCGACGGGCCCGCGCGCTGGTCCTCCTCGAGGATCGGGAAGCCGGCCGTACTCGTGATCAGGAGCAGCCGGTAGTTCGGTGGTCGCGGATTGGACGGTCAGAAGCTCCAGCTGTACAGGTGAGCGTCTGTGCTCACCGCGAGCGCTGCGAGCCGGGCGACTCCTTGCAGGACTGCCGGCAGATCGTCGTCGGTCGTCTCGTCGCCGTCGTGGGACCTGATCCTGGTGGTCCAGCGGTCGGCGAGCTCCTCCAGTTCCGTGGGGCCGGCGTCGGCCAGCGCCCGGGTCAACCGCTGTGGCAGCGCGAACACCTCGATGCCGTCGTTCAACGGGGCGGTGACCCACTGCGGCCACCGCCCGTGGAGCTG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCAGGCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 276-948 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000240.1 Streptomyces sp. XY431 P412contig308.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================== ================== 276 29 82.8 32 ......T.T..AC.G.............. ATCGGCAGCCATGCGGCGAAGGTGCGTTCCTG 337 29 100.0 32 ............................. TTCTTGCGCGATGACCTGACGAGGATGCCGCC 398 29 93.1 32 ............GA............... TCGGAGATCCGTGCGGAGTTCGCCGCCGAGCT 459 29 86.2 66 A.....T.....TC............... GGGTGGGCAACATCCCAGCTGGCCACCGGAGGGTACAAGCCGTGAGAACGGTGCAGGTCGCGAAGG 554 29 86.2 31 ............CAG..........A... CCGGCCTCGGTCCGCCAGGCCAGTCCCGGCC T [582] 615 29 86.2 32 ............CAG.........G.... AGGTGACCGGCGAAGGGCAGCCCGCGTGCCGC 676 29 79.3 32 ......T...T.CAG..T........... ACCCGAGCCGATCGCTTTCAGGACGACCTGAG 737 29 100.0 32 ............................. CCGGAACAGCCGCTCGCCCGCGACGCCACGAT 798 29 96.6 32 ........T.................... CCGGGCACAAGCCGTCGATGCGGACTCGGTTG 859 29 89.7 31 .....G......CC............... CAGCGACCGAGCTTGGCATCACCGACCCGTG 919 29 89.7 0 ...................A......TT. | T [923] ========== ====== ====== ====== ============================= ================================================================== ================== 11 29 90.0 35 GTCCTCCCCGCGAGCGCGGGGGTCAGCCG # Left flank : CGCCTGCAGTACCGGCCCGATACCCTCGACGGCTTCATAGCCGGCACCGGCCTGACCCTCGACACTCCAACCTCACCCTGACAAGCCGAAGTCAGTAACACACCACAGGTGGGGGTGATCCTTTACCGCGTAAAGATCCAAGACGCTTCCTCGCCCGAAGGGCTCAGCCGGCGGGGTTCTCGGCGACGCCGAGGTCGCACTCGTTTTCCCCGCAGGCGCAGGCGCAGGCGCAGGGGTCAGCCGCAGCCGCAGCCGGGGACCGGGACCGACGGCCCG # Right flank : GTTGGTGGTCGCGGGTTCTTCGTCGAGGAGGCCGCAGGCTACGGGGAAGTCCTTGATGAACTGCCGTCGGTCGGGGTCGGTCTCGGCTGCGGCCAGGTCGGTGAGCGCGGTCAGGAACCGCTCGCGCTGGTCGTGGGGCAACTGCCGCAGTACCCAGCTCACACTCTCCGTTGCCTTCACCGCAGAGTCGGGGTCGACCTCGTCGTCCTCGCAGGTGTCGAGGAACCGGACGATGTCCACGACGAGCCCGACGAGGACAGGCACCAGTGGGTCCGTGTCAGTCATCCGGGCAACCTACCCGCCCCCAACGACAACGCCACCGCCCACCCGGCCGACGGCAGACCCCGGCAAGCGGGGATCCACTCCCCCGGGCACCACACCGGCGAACGTGCGGCCCCGCCTTGTCTGCCACGATGGACGCTGCTCCTTGACACCTCAACAGACCGGCCCGGAACGCTACGTCCGGCAGACCGGTCAAGGAATGGCAAAGCCGTGAGAAC # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.19, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGAGCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGAGCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1272-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000255.1 Streptomyces sp. XY431 P412contig319.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1271 29 82.8 32 A..A.....A.GA................ GTCAGTTCAAGTGCGTCGCCACTGCCGAGGGC 1210 29 93.1 32 ...........GA................ AACCCGGAGCTCGTGTCCGCGGTCACGCCGGT 1149 29 89.7 32 ..G........GA................ CAGGTCAGCACCACCAGCAAATCGACGGTCGT 1088 29 93.1 32 ...........GA................ ACCCAGCTAACCGTCAACACCACGTTCCCGAT 1027 29 96.6 32 ............A................ TCCGATTTCCCGCGAGTACCGGGAAAGGATCA 966 29 89.7 32 .......T....A...........T.... CCGTCGTCCGCGCACCCGAACCACAGGCCGAT 905 29 96.6 32 ............A................ TGCACGGTGCGACCCGACCTGCTGGGGGTGCG 844 29 100.0 32 ............................. GCGGTCCTGTTCCGCACCTTCGTCCTGACGAA 783 29 86.2 32 ...........GCCT.............. CGGGACGTGCCGTACGCGCTCGGCCTGATGGC 722 29 86.2 32 ...........GCAG.............. TTCCGGTCGTCCAGCCAGTCCCGGCAGATTTC 661 29 86.2 32 ...........GCAG.............. CACGAGACGGAATTGCGCTTAGGGTCGGTCGT 600 29 82.8 32 ........T..GCAG.............. GCGCGGGAGTCGGTGAGGGCGCCCGGGTCGGC 539 27 89.7 32 ................--.........T. CAGATCGCGCGAGTGTTCAAGCGATGGGTCAC GT [532] 478 29 86.2 32 ...........GCAG.............. GCGTACATCGACTTCTCCTCGGGCACCACGGT 417 29 96.6 32 .......T..................... CTGACGGCCTGCCTGGTCGGCATCCGCACCCA 356 29 100.0 32 ............................. GTCTGCTGCGTCCGCTCCCACGCCTTGCCGAA 295 29 100.0 32 ............................. ACGGTCCCGGCCGGGATCAGCACCAGCGGCAG 234 29 100.0 32 ............................. GTCGGCGACATCACCGCCAAGTTCGTCCTGAG 173 29 100.0 32 ............................. CTCGCAAAGTACCTGGTCAAGGTGCAGGACAA 112 29 100.0 32 ............................. TCGCCGACGTCGACCAGGCCGACGCCAGACCG 51 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 93.1 32 GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Left flank : CCGGAGAGGTTCACCCTTGCGGAATGGCTCACCGACTGGCTCGAGGGGAACCGCACGTTTCCCGACCCGCCCGATGTGCCGGACTGCCCTGATTGCTGACACGTCCCAGGACGCTCGCGGAACTCCGGGCAGAGCCAAAACGCGGGTCCT # Right flank : GCTGTTAGTACAAGGCTCAACGG # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCAGGCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 605-999 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000271.1 Streptomyces sp. XY431 P412contig333.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 605 29 100.0 29 ............................. CCGACGCGGTCCCTGGCACGATCGGCCGG 666 29 96.6 31 ........................G.... ATCACCTGCAATCCGCCGGCGACGTCGTCCG 727 29 86.2 30 ........T..GAA............... GTTCGACCCGTATGCCGCGTACCAGACCAG 788 29 86.2 32 ...........GCAG.............. TTCGGTCATGGCGTCCCCCTCGGTCGGTCGGC 849 29 86.2 32 .......T...G.AG.............. CTAGTTCGTGATCCCGCTCCGCACGGACCCGC 910 29 89.7 32 ..........T.CC............... TCGCCGTCGAGGCCTGACGCAGAGATCGGAGA 971 29 79.3 0 ..T........GA...........T.T.A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 89.2 31 GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Left flank : GGCCATGAAGGCTCCTCCCCACGCACGCAGGGGGGTCGGCCGGGGTGGGAGCGGGCCCGCGCCGTGATCGATTCCTCCCTGCGCCGGCAGGGACAGTCCGACGGTGTTCGCAAGCTCGACCGCGCCTCGCCGATGACGAGGACGGCACGTTCACCCGGTGACCTGTGTTCTCGCACGCCGCATCCGCCGAGCCCGTCCTCGAACAGGGCAACCACATCCCGCACCGCCGCCGAACCCGACAACCGGCCTCCCCTCAACCACCGAACCGGCCGCCGAGAACACCACCGGCTCCACCCCCCCCCCAGCCGAGCAGACCCACGCCGCACTACCGACCGCGGACCTCCCGAAAACCCTGCCGACCACCAAACCGACCCACCGCGTCGGCCATGTCTGCCACGATGAACCCGGCTCTTTGACACCTCAACAGGCCGGCTCGAATGTGGTCCTCGACGACTGGTCAAGAAATGGCAAAGCCCCGAGAACGCCGCAGGTCGCGAAGG # Right flank : TTGGCGTCCGTTACGGTGTGCGTCGTGACCGACTCTGTGGCCTGGACCGACGACGAGATCATCGCCAGGATTC # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCAGGCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.40,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14792-15246 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000063.1 Streptomyces sp. XY431 P412contig154.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14792 29 100.0 32 ............................. GAGTTCGCCCTGATCCGGCAGGCCGGAGGGCA 14853 29 100.0 32 ............................. ACCAGAGACAGCTCGCGGCAGCGCGGGAGGGC 14914 29 100.0 32 ............................. ACCAGAGACAGCTCGCGGCAGCGCGGGAGGGC 14975 29 100.0 32 ............................. GCCGGCACCCTCGGCTCCCGCGGCGACATTTC 15036 29 100.0 32 ............................. TCGCCTCGGCCTCGGGAGTGCGCCTCGCGGTA 15097 28 93.1 32 ...C........-................ GTTGGGGCGGAGGCACGCGGGTGGGCCCGGTG C [15112] 15158 29 82.8 31 ...C....T....CC.............T GGGCCACGCGGAGTGCGAGGAGCGAGTGCTG 15218 29 75.9 0 ..A.C...........T......G.TT.T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 94.0 32 GTCTTCCCCGCGCAGGCGGGGGTCAGCCG # Left flank : ACGATCGTGCCGAACGGGTCGCGCAGCTGGGCGATCCTGCGGCCGGGCCCGACAGTCAGTGGGCCGCGGTGGTGCTCGCAACCGGCCGCCAGCAGCCGCTCCCGCACCCGGTCGACATCGTCCACACCCCAATAGACGACCGGGCTGCCGCCCCGGGGGTTGCGCTCGTCGTCCACCGGGTGGAAGCCGACCTCGACCCCGCCGATCTCCGCCCACGCGTAGACCGCCCCGGCGTCACTGACGTCCGTCTTCACGGGCACGTCCAGGAGCTCGCCCCACCACCGCGCCGACGCCTCGGGGTCCACGGCGAACGTCATCACGGTCCGGACACTGGAGAACAAGACCCACCTCCACGGGCTGCATCGACCGATACACCGTCAGAGCCACTCTGTCACGATGGACCCGGCTCCTTCACACCTCAACAGACCGACCCGGACCGCGACGTCCGGCGAACCGGTCAAGAAATGGCAAAGCCGCCGGAACGGCGCAGGTCGCGAAGG # Right flank : TTTACGGCGTAAAGGTCCGACAGTGAGCTGCTTCGCCGCCGGGACTGCTGCACTCCGGCCTTGACACCCCGGTGAGGCAGACTGCCCGCCATGACAGCGGATGATCACGACGTCCAGGCCTCCTGGAGCCGCATCGGCACCTGGCTGACCGCGCACACCCGACGGGGCCGGGCGAGGCCGGCGTCGGATGCCGCCCGCCTGGACGCGTTCGAGGCGGGCCTTGGCCTGCCCCTGCCCGCCGACCTGCGGGCCTGGTGGCAACTCCCCGACATCGCCACGGGCTACTGGATACCGGACGAGTTCACCCCGGTCTCGCTGGACGAGGCCCTGGAGACCCACGGGATCTGGCTGCTGGTCGCAGAGCAGGAAGGCGACTCGTTCGACGAGAACGGCCGGCCCGAGAGCCGCTACGAGCGGGAGTTCATGCCGATCGCGCTGAGCCCGGGCGGTGACGGACTGATCGTCGACATGCGCCCCGGCGACACCCATGGCGCCGTACT # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCAGGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 16963-17356 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000063.1 Streptomyces sp. XY431 P412contig154.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16963 29 75.9 32 A.....G.T..AAG........C...... ATCAACCCGGCTGTCACGTACCCGGTGATCAA 17024 29 100.0 32 ............................. ATCGCACGTCGTATCGCTGCCTCGGCCGGGTC 17085 29 89.7 32 .............AG.............T CGACCTCCAGCACCACCGTCCCGCACCCCATC 17146 29 86.2 32 ...GG.......AA............... GCGATCCGTGCGATCGCGGTGTCGCTCGCCCG 17207 29 96.6 32 ........T.................... TAGAAACAGGTCGGCCGACGCCGACCGGAACC 17268 29 93.1 31 ............T.........G...... ATGGCCGGGACCACCAGGGCCTCCTGCCTGC 17328 29 79.3 0 ........T..A.GG..A....G...... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 88.7 32 GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Left flank : GGGCGGGGCTGGTGTCCGGGCGGGGCCGGTCGACGTCCGGGCCCTGTCGGTGTGCCTCGTCTGTTCTGCCATGATCTTGCGGAGCGGATGGAGGAGGGGTGTGGCTGTGGACGAGCGGATCGATCCGGTGCAGATCGTTGCGAGGGTGGGGAACTTCGCGAGTCGCGAACGTGCCGTCGAGGTGTGGGTGCACCTCGCCTCCAAGGCCGGCTGGCAGGTCGCCACGATTTCGGCCGTACCGGAAGGCCCGGACGGTGGGGACTGCGGAATCGTCGAGGTCGAGGGCCTGCGTTACCGCATACGCCTCGCACCACGCGTGCGGACGGACCTCGCCGATGACCAGGACGGCACGCTCACCTGGCGACCGGTCCTCTCGCACGCCGCATGGGCCGAGCCCGTACTCGAGCCGGGCAACCACATCCCCCACTATGGCCGAACCTGACGCCCAGAACCGCTCCCTGTGTCCACGGGGGACTGCGCCCGCCGCGAACTTCGACGGC # Right flank : GAAGAAACTCCAGGCGGTCGTTCGAGGTCGACTGACCAAGTACCTCCACAGTGACGTCCTCCCCCATGCGCGAAGTGGACCATCATCAATGTTGGTAAAGCTCTTGAAGCCGAAGAATTTCCCGTTGCCAGTGCGCGCGGGTGGCAGCGTCACCAGAAGGCAGATCCCGTCCGAGCCGCGCGCTCAGACTGCGGTACAGGGTCAAGGAACTCGCACCGTCCGCAGCCAGTAGCGAGGACAGCATGGGTTCTGCTGTCGTGGTCTCCTTCTCGACTTCCAGCAGCACCGCCATGCGATCAACCGAATCGAGGAGGGTCCGGGCACCGCCCAGCTGGCGGCGGAGCGTTGCCCAGGAGAGAACACCTTGTTCACGGGCGGTCATCTCCAGAACGCTACGCACAGCAGCAGCTGCGTCAGCCAGCTCCGTGGACGTTGCCCGGGGAGACCTTCGGGCTTTTGCGGGCAGAGCCTTGGCGTCATCGGTGCCGGTAGCCGGCTCT # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2146-3517 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000077.1 Streptomyces sp. XY431 P412contig165.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2146 29 96.6 32 .............C............... TCCTCGTCCGCGCCGTAGGCGATGGTCCGGTG 2207 29 96.6 32 .............C............... CGGAGCCGGACCGCTCGAAGGCCGGCTGAAGA 2268 29 96.6 32 .............C............... CCCTCGGAGCGCCGCACCGCCGTACGGCACTT 2329 29 96.6 32 .............C............... TGCGCGACCCTCTTTGCGATCTTCATTTCGCG 2390 29 100.0 32 ............................. AGCTATGGGTGGTTGCCGAGCGCCGGCCTGTC 2451 29 96.6 32 ..........T.................. TCGCCGTGGTCCAGCGGGAGTTCACTCAGCGA 2512 29 100.0 32 ............................. GCGCAGTCGGGCCAGGTGAGGCGGTGCTCGCC 2573 29 100.0 32 ............................. GGTGACAACGCCGTCGAGGCAGTGCTGATCGG 2634 29 100.0 32 ............................. GCGGCCGAGTTGAAATGCAGGACGGGGCCGTT 2695 29 100.0 32 ............................. CGAGCGCGCCAGGTCCCGCCGCGCTTTTCGGA 2756 29 100.0 32 ............................. GTCGCGGACCAGCCGGTCTTGTCGTTGTTGCC 2817 29 100.0 32 ............................. GGCGGGATCGTCACGAGCCCGGTCGTCGGCCT 2878 29 100.0 32 ............................. ACGGTCAGCGGCGGTCTGGAGATCTGGTCCGG 2939 29 100.0 33 ............................. CCCGCGCGGCCCCGGCCCGGACCCCTGGGCCGG 3001 29 100.0 32 ............................. CACACCGCGCAGGGCATCGCGGCCCACGGCCC 3062 29 96.6 32 .........................C... CAGACGGTGCACCAGAACCCGCGCCGTGCCGC 3123 29 100.0 32 ............................. GAATCAATTACCAAGGGAAACACATGAATTCA 3184 29 100.0 32 ............................. TTCCGGACAAACCCGATCGGGGTTTTCGTCTG 3245 29 100.0 32 ............................. AGGGGGTCACCTCCTCGCGCCTGTCCGTGGGC 3306 29 100.0 32 ............................. GCCAGGGCGACGCTGAACGACTTGGGCATGGT 3367 29 100.0 32 ............................. GATCAGGCGACCAAGGTCCCGTTCGGCTTCGC 3428 29 100.0 32 ............................. CGTGTGGATCGAGGTACCGCGTAAGGCGGGCA 3489 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.1 32 CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : TTGACCGACGGAGCAGGCATACCGCTGATCACCGAACCCGCGCAGGCCAACACTCGCGACCACACCCTGCTACCCGCCGCCCTCGACCGATACGACGCACTGGAGTCGGCCCTTGGACCGCTGCCGGAGCACCCGAGCCTGGCCCTGGACGCCGGATACGGATACGGATACGGATACGGATACGGATACCGCATGCTCCACGACGACCTGGCCGCCCGCGGGATCGAGGCCCGCATCGCCCCGCACGGCGCGAAAACTCCGATCCAGACCGCAGGCCGTTGGGTGGTGGAGCGCACGAACTCCCAAGCAATCATGGTGACAGTCATCGTCGGTATGTGTCATCTATCGGCGGTAGCCGCACGGGGCCTGGCAGGGTGAACACCCTCCGCACACCGCTCACCGATAGCCTTGCGGCAGCGAAAGGAATGCGAAGATTGCCCGAATCAAAGGAAGTTGCACAAAACGCCACCCATCCGTGACCACGCCCCAGGTCACGAACT # Right flank : CTTGCATTGGGCAGGTCATTTGAGAGCGGGACGGACAGCGAGATCGGGATGCACCAGCCGCACAACTGGATTGACGGCAAGCATGATTCAGGAGGCGCTACGCAACACGTTCGAAGCAATGTCTTCGACTGCCCCGATTGGCCACGAGATGAGATCGGTAAACGTTCGGGGAGGCCGGACGCCGGCGACACGGATCCCTTCGGGGCTGGTTCGCCACCACTCCCCGTCAGGCCGCTTCCGCAGCGGGGATGCCGTTGGAGCCGGCGCCGTGGGCAGAGCGGGCGAGGCGGGCAGCGAGGCCCAGGTGGAGGGCGGCGAGTACGGTGCCGCCGGCGGTCATCCCGGGGTTGTGGGAGGAGGCGCCGATGGCCGCGTCGGCCACCTGGACGGCGCCGGCGACCAGCAGAAGCGGTACGAGGCCGCGGCCGGTCCGGCTGATCAGCAGCTGGTGCAGCAGGGCTGCGCCGAGGGGCAGGGCCCGGGCCGCGTAGGCCTGGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 602-752 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000207.1 Streptomyces sp. XY431 P412contig28.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 602 29 100.0 32 ............................. CTGCTCAACCACGGGGCGCCGGCCGGGGTCGC 663 29 100.0 32 ............................. CACTACCGCACGAAATCGCTGAACCGCGAACT 724 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTCCTCCCCGCGCAGGCGGGGGTCAGCCG # Left flank : CCGGACCACGAAGGCTCCTCCCCACGCACGCAGGGGGGTCAGCCTGGGTGGGAGCGGGCCCGCGCCGGGATCGAGTCCTCCCTGCGCCAGCAGGGACAGTCCGACGGTGTTCGCAAGCTCGACCGCGCCTCGCCGATGACGAGGACGGCACGTTCACCCGGTGACCGGTGTTCTCGCACGCCGCATCCGCCGAGCCCGTCCTCGAACAGGGCAACCACATCCCGCACCGCCGCCGAACCCGACAACCCGCCTCCCCTCGACCACCGAACCGGCCGCCGAGAACACCACCGGCTCCACCCCCCCAGCCGAGCAGACCCACGCCGCACCACCGACCGCGGACCTCCCGAAAACCCGGCCGACCACCAAACCGACCCACCGCGTCGGCCATGTCTGCCACGATGAACGCTGCTCCTTGACACCTCAACAGGCCAGCTCGAATGCGCTCCTCGAAGACTGGTCAAGAAATGGCAAAGCCCCGAGAACGCCGCAGCTCGCGAAGG # Right flank : GGAGGCCGCCGTGGGCGGGCCGCTGCGTGCAGGTGTCTCCGCAAGAACACCGACGCCGTGCACGCGCATCGACTCAGTCAGCGTGAGCGGATTGACGCCCAGGGCCGAGGCGATCTCGTCGGCCATGTCGAAGGCACGCCACTTCCACTCCTCCTCGGCATCACCGTTGCGCGCGCTCTCCTCCCAGACGGGCGGCAGACCCATCCGCTCCCGCTCCGCCCGTTCCTGCACAAGCGGTTCCCCCAGTGTGAGGAGTCCGTCGTCGACCTGGCCGGTCTCGCAGTAGCGCCGCACCACCACCCCGTGCTCTGCGATCAGCCAGGCCGAGCCGTCGTTCTGTGTACCGAAGTAGTACGCCTGCGCCCCTCCGTAGCGGGAGCTGAGGTCGACGCACAGGCGCAGGACCTTGTCACTTCTGTCGGTGTTGCACGGATCGCACCACGGGCCGATCACCAGAGTCCATCCCTCGATCTCGGGGCTCACGTACACCCGGGCCAGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2529-3410 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000207.1 Streptomyces sp. XY431 P412contig28.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2529 29 86.2 32 ...........GCAG.............. TGATTCGTTTAGGGTGCGGCGGAATTCAGCTA 2590 29 86.2 32 ...........GCAG.............. GTGGCCGCGCTGTAGCCGGCCTGCCGGACGGC 2651 29 100.0 32 ............................. CCGTCCAAGGTCTCCGCGCGCAGGCCGGTCCA 2712 29 100.0 32 ............................. ACCACCGCCCGTCGACTGACGGACGAGCAGCG 2773 29 96.6 32 ..................T.......... CCACCACGCGGTCCCGGGTCTTCGACCAGGCG 2834 28 93.1 32 ...........-.C............... TTCGGCATCATCAACCTGATCATCAAGAAGCT 2894 29 100.0 32 ............................. CCCTTCAGGTGCAGCACGTAGGCAGTGCCGCC 2955 29 100.0 32 ............................. GCGTCCGCGGCCTGGTCATGGCGGCCGAGGAC 3016 29 86.2 32 ..T.......T..AG.............. TTCAGCTCGATGAACTCCATGGCGGACCGCTT 3077 29 93.1 32 ...........CA................ CCCGCCGGATCACGCCGCTGCTGCTGATGGAA 3138 29 96.6 32 .............C............... GGTGAGGGCTGCTACGCGGTGCTCTCTCCGCC 3199 29 89.7 32 .......................G.T..C CACTACAGACCGCCAGCCGGCCCTGGCACCGC 3260 29 72.4 32 C.G........GTC.........G.T..A GAAGTGCAGCGGGTCGCCGAGGGCGCCGTCAC 3321 29 72.4 32 C.G........GTC.........G.T..C CCCGGCCAGCACGCGGGAACGGCACCCGCAGC 3382 29 72.4 0 C.G........GTC.........G.T..C | ========== ====== ====== ====== ============================= ================================ ================== 15 29 89.7 32 GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Left flank : GTGATCGCGTTCAACCACGGTCTCCGGGCGCCGGACGGTCTTGCCGACGTCGTAGCGGGTGGCCGGTCGCTGGTTCTTCGACCCGAGCGGTCTGCCGGGGCCCGGCCGTGAGGGCTTCGGCGCACGGGCCGGGCAGGGCAACACCGGGCGGAGGTTTCTGAACCCGCGGCGAACCCGGGCCGGGGTGAGCCTGTTCGGTTTCATCGGTCGCTCCCAGGGCCGACGGACGTCCTCGGCGAGCGGCCGGGCAAGGCGGAGCTGGGTGTGCGCAACGATGACCAGCCACGTCCACCGGTCCGCCGCTGCCGGAGTGCGGAGCTTCGGTCGGGTCCAGCCGAGGGTCTGCTTGATCATGCGGAACGTGTGCTCCAGGTCAAAGCGCCGCAGGAACGCCTGCCAGCGCAGATCGACGCCGGCACCTGTCAGACCGGTGGCGGAGGACCACAGCCACAGCGGCAGCGGATCCCCGCCGCCGGGCAGGCGGTCCACCTCAAGACGAA # Right flank : CGCAGCCGGCATCACCGCTGAGCCGCCCGTGCTGGGATCGGCCGGCCGATCATCACCGTCCCTCGGCCCGTCTCCGAGGACGCTTCCCCGAGCTCTGCCGCCACGCTCGAGGTGATCCCTCTGTGGGCCGCACCTCAGGCAGCAGTCCTCCCGGGGACGCGCCGGCCCTGAACCCGGTGGGCCCCGGCGAGTGGGTGGCTCCTACCGGATGAGTCCTCCCCCACGAGCGCGGGGGGTCAGCCGAGTGATAGTTCGGCCCCTCTGCGTGGTCAACAGTCCTCCCCGCGAACGCGGGGGTCAACCGTCCCTTCGTGCGGCCTCGGCGACCACTGCGGTGCCCTCCCCGCGAACGCGGGGGTCAGCCGGGCATCTCCGGCGCGATGGAGCAGGAGCAGGTGTCCTCCCCGCGCCCGCGGGGGTCAGCCGGCACGCGAGCGACGCCCGCGCGCGAGGGTTGTGTCCTCCCCGCAAGCGCGGGGGTCAGCCGGCGAGGGGGTGAG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCAGGCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8596-9345 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000207.1 Streptomyces sp. XY431 P412contig28.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8596 29 75.9 32 AA.T...T....GA........C...... GAGACTTGGATTTTCTTCGATGAGACGCACCT 8657 29 96.6 32 ...........G................. TCCTGGCCAGGGCTGCCCGGGTTCCCCGCCGG 8718 29 86.2 32 ..T........G.GG.............. GCGAACCCCATGTCGTGGACGTTGGTGGCCGG 8779 29 75.9 32 ..T..T.....G.GG...A......C... CAGTCGTTGGTCCGCCGACAGTGCGAACCCGG 8840 29 82.8 32 ........T..GGG.....A......... TACAGCCTGTACGACGACGCCGCGAGCGACGG 8901 29 79.3 32 ...T.G...A.G.AA.............. ATGTAGCCCGCGGCCTTGGCCTCGCGGAGCAC 8962 29 82.8 32 ...A.......GAG..............A GTCGAGTCGAACCACGCCGCCGGCCACCGGAT 9023 29 100.0 32 ............................. GCGCTGATCGAGTACCTGACGAAGGTCCAGGA 9084 29 86.2 17 .....................TA.GA... TACGGCCCGCCCCAGCG CG [9109] Deletion [9130] 9132 29 89.7 32 ............GG...........A... GAGTTCGCCCAGGCCGGCCAGATGCAGTGCGT 9193 28 86.2 32 ............GG........-.....T GCCCCCGCCGGCGAAGTACCAGTCCAGGTCCT 9253 29 82.8 31 ......G..AT.GG............... GGACGCTGGTGGCCTCGTTGTTCACCTGCCA 9313 29 86.2 0 .G..C......G.G............... | CTGG [9327] ========== ====== ====== ====== ============================= ================================ ================== 13 29 85.4 31 GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Left flank : CGGGGCGAGCGCCAGCTGGTCGCCACGACCACGGTCGGAGTCTGGACGCTGCTGATCGAGCCCAACGGCTACCTCGGTGTTACCGAGGACCGAGCCGTCCCGGCTTCCGCCGGGGCCTGCTGGGTCTCCCACTTCGTCAACGTCAACGGCCTCGGCACGTTCCTCTGGGCGGAGGACCAGGTCCTGCGACTGTGCTTCGACCCCATGTACCCGGACGAACGCTGGGGCACCACGCCCGACGAACTCCTGGATGTCATGAAGCAGACCGGCTTCCACTTCGAGGAGCAAGCTCCCGAAACCGACCTGTCCTCACCAGCGGCATTCGCACTCGCGGAGCACCTCACCGGGATCGCCGTCACCCCGACACTGCTCCAGGACACCCTGTTCACCTGCGCCACCGTCCGGTCTCGGTGACCTCCTTCGGCCGGAAGGCGACCGGACAGTCGTCCCGGCTGTCCTGGGACAAGGCGGGCCCGAGCGTGAGCGCTGTCCACAGAGGA # Right flank : GTTGTCCATGAGGTCCACCTTGTCAGCCTGGTGCGACACTCAACCGGGCGGGTGGGATGTCGGCCTCGGGCGCCGGTCCTTGCCACCGCGGTGCGAGGCCGCGTTACGCGGCGCCGAACCAGGTCTGCCGCTCCTGTGAGGCTGCGGAGACCAGCAGCCTGCTCAATGGCTCGGCGCCGGTCAGCGCGTCGTGGACGACCCCGGTCATGCCGTGGTCGTAGCGCGACCAGGCTTCCGAACTGCGACGGCCGCGCTCCCACACATAGACCGGCCACGCGTCGGCGTCAGAAGCGTTCATATGCCAGAAACAGACGTCCCCGTTCGGATTCCGGGCCCAGGCCAGCAGGCCGTCCGGCTCCGGGTGGAACGAGAACGGGAAATTGTCCGGCCACACCTCGCGCATCTCCCGCATGGCCCGCCCGACCTCGTGCTCGGTGTACCCGGTCATGGCCTCGAACCCATTCGTGGCACCGAACCAGGAGCCGCTCATGAGCGGTGTG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.27, 5:-1.5, 6:0.25, 7:-0.09, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACCCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [19-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 14596-15895 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000207.1 Streptomyces sp. XY431 P412contig28.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================ ================== 14596 29 100.0 32 ............................. GAGTCGAAGTCACCGAACGTGTCGGAGGTGTC 14657 29 100.0 32 ............................. CCGCCACCACCGTACATGGGCAGTCGGATCGT 14718 29 100.0 32 ............................. CTGAGCCTTGTAGTCCTCCAGCTGCTGTGCAG 14779 28 96.6 32 .....-....................... GACGTCCTGAGCCTGCTGTCACGTCAGTTCGT 14839 28 89.7 33 ........T.............-.T.... GCCCTGTGCCTGTCGTGCCCGATCGTCCGCGAG 14900 29 93.1 25 ...........GA................ CCCCCCGTCCCGCGACCGATCCCGA Deletion [14954] 14954 29 86.2 32 ..........TGT.........C...... GAGGAGAAGAGTCTCCGTCGGGCGAAGGTCAC 15015 28 82.8 147 .C.....T...-.C..........G.... TCGGTCTGTACGCCAGGCTCTGTCTCCCCTTCTTCCTGCTGTGCCCGCAGGAGCGCCGGCTCACAGAGCGAGGAGGGACACGGTGCCACCGAGGCCTGCCACGATGGACGCTGCTCCTTGACACCTCAACTGACCGGCCCGGACCGC G [15030] 15191 29 89.7 31 ............TAG.............. TGGTCGACCACCTCAAGACCGCCTGGTCGGA AA [15202] 15253 29 89.7 32 ............TAG.............. CCAGCGCCTCGGCCTGGCCGTGTAGACGAAGG 15314 29 79.3 88 ..........T.CCTT...........G. GCGAGTTCGTCGTACGGCGTCGAGCTGCTGCTCTCACCCCCGCGGTCGTACGTCACTCCGACCATCAGGGTCCCCGCAAGTGCGGGGT 15431 29 93.1 32 T.G.......................... TCCAGGACCAACGCCCGCTGGGTCACCGCGTT 15492 29 86.2 32 ......T..A..A.......C........ ATCGGCAACGCCGGTTCGGAGACGCTCAGGCG 15553 28 79.3 172 ........AT..A...T..A..-...... CAGCCGACGTCCCCCTGTTGTATAGCGGACAGCAACGAAAACGGGGTACCACGTCGCCGGTGTCTGCCACGATGGGCGCTGCTCCTTGATACCTCAACAGGCCAGCCCGAATGTGTTCCCGAAGGTTAGTCAAGAGTTTGCAGAGTCGCGAGAACGGTGCAGGTCGCGAAAG 15753 28 75.9 85 ...........GA....A.CC.-....G. ATGATCGCCGACGACGGGCGGTCGAGGTGACGTCCTCCCCGCGAGCGCAGCCGCGCGCGACTACTGGCGTACGGTCCTGATCAAC C [15778] 15867 29 93.1 0 ...........GA................ | ========== ====== ====== ====== ============================= ============================================================================================================================================================================ ================== 16 29 89.7 56 GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Left flank : ATCCGCGACATCGTCCTCCCCGCGCCCGCAGGGGTCAGCCGCCGAGCTGGACATCCTGCGCGAGCGCCTCGACGTCCTCCCCGTGCCCGCGGGGGTCAGCCGGTCCGCGACTACTCCAAGTCAACGGAAACGAAGTCCTCCCCGCAGGCGCGGGGGTCAGCCGCAGCTCGTCGCGCGCTACGGCGTCACGGCAGAGTCCTCCCCGCGAGCGCGGGGGTCAGCCGAACGCGCGCCGCCTGGTCGACGAACAGACCGGGTCCTCCCCGCGCCCACGGGGGGTCAGTCGGCGGGATCGTGCTTGAGGCAGGGGCCGCTTCCACGCCGCACGGCCGACTGCCGGCCTCCCGAAAGCCCGGCCGACCACCAAACCGACCCGTCGCGTCGGCCATGTCTGTCACGATGAACGCTGCTCCTTGACACCTCAACAGGCCAGCTCGAATGTGCTCCTCGAAGGCTGGTCAAGAAATGGCAAAGCCCTGAGAACGTCGCAGGTCGCGAAG # Right flank : GTCCACGGACTCGACCACGGCCTCGGGGACCCAGCCCCCCGGGGTCCGCGGCCGGTAGCGTCGTCGCGGGGCCGTCATCGCCGGGTCGTCACTGTCGGGTCGTCATCGCCACCAGCCGACGGACCGTCATGACGGTCGACCGGGAAAATGATCGATCGAACGCGTACCGACCCCTGTCCGCAGTCGCCCTCGGCGGACAGAATCACCCGTATGACAAGCGCCACGATCGCACCGCCCACCGGTGCCGCTCCCCTAGACCTCGCCAGGGGATTCCTGACCGGCGGCGTGATCGGGGTGTCGCTGGCCGCCTTCGTCGTCGGCTGCACTCTCGGCAAGGTCCCGCTGATCGTCGCCGGACCGGCCCTGCTCGCGGCCTACGCACTGCTGTTCCGCCTTGTCAGCGCGCCGCGCCGGGCCCGGGAGGGCGCCCTGGCTCCCCTCACGGCACTGGCGCTGATCGACGGACGGGAGATGCGCACGGTCGAGGAGACGGACGTCCC # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:0, 6:0.25, 7:-1.18, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTCAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCAGGCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1393-1970 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000084.1 Streptomyces sp. XY431 P412contig171.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1393 29 100.0 32 ............................. GCCGTCTACGTCGGCCCCGGCAGCCGCTGGGC 1454 29 100.0 32 ............................. CCGAAGGCGGGCGCCGTGCTGCTGGTGGTGGA 1515 29 100.0 32 ............................. CATCCGTACGCGCGGCGGACTTCCTCCAGGTC 1576 29 100.0 32 ............................. CCGAACGTGGTGGGCGGCCTCCCCCCACAGGA 1637 29 100.0 32 ............................. CCGCCCTGGGCCTGGACTCCGACGCGGACGAC 1698 29 100.0 32 ............................. GGCGACTCCCTGCCCAGCCCCGAGCACTTCGA 1759 29 100.0 32 ............................. CGTGCTCGGCGATGTACCGGTCCATCAGCAGG 1820 29 100.0 32 ............................. GCGATGATCGAGCGAATGTCCCCGATGGGGTT 1881 29 100.0 32 ............................. AGGCCCAGCTCTACAGCGCCTACACCCGCTGG 1942 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : TCCACGAGGGCAACGTCCTCGTCGGCCCGGGGGACGTGGCCCACGTGACCGGCATCATCGACGTCGAGAACGCAATCGCCGCAGACCCCCTGATCGACCTCGCCAAGACCGACTACTACTCCCTCGGCCGCGGCGAACCCGAACGCCATACCCTCTTCGAGGGCTACGGACCGCTCCCTGCCGACGCCGCCGAACGCCTCGACCTCTACCGGCTCTACCATGCCCTCGAATTGTGGGACTGGTTCCGATCTATCGGCACCGTGGTTCCCCTGGGCAGCATCGCCGACGACATCGCCCGCCTCGCGGGCCAGCGCTCCGACACGCCGTCGTGACCCGGACCAGGCGCAACCCACCCGTGCACGCGGGACGGCGAGCGGAGGGCAGGAAGGGATAGGGTGACCCCGGTGCACAGCCTGCTGGCAGAGGTAGCCGAAATGCCCGATTCCCTGGAAGTTGCAAAACTCCGCCCCGCCGCCAGATAGACCCGCAGCTCACCAACT # Right flank : CGGACGTCCAGGCGGCCCCGAGCATCGACTCGGGGCCGCCGTGCCTCAACCCTGGCAGCGGTGGCGCACCACCTGGTCGGGCGGTGCGGGGTGGACCTGGTCCGCCCGGGCGTCCGCCCGATACCAGGGGCTTTCGTGGCGTCCCAGCACCCCTATGGAAGACGGAGTCGAAGAACACGCGACCCGCTTCTCCTCATCCACCCACTCGGTCGGCGGATCCCCGTCTTGCATCTCGGGCCCATTCCGACGAACTGCAGTTCCATGGCGCTCTCTCACATCAGTTGTACGGAGGAGGTCCATGGCGGCTCGGATGCGGACCTCGGCTTGCCGTCGCTGGTCGTTGCCGGTTCGTCTGCTGCCCGCCGACAGGAGGCGGCATGGCGGCGGCAACTGGCGGAACCGGTGGCGGGCGACCAGCCCGGTTCGCGGGTGCTGACCGGTTCACTCCGGTACGGGGAGGCACTCGGCGAGCAGGTCGAGGACGTCGCGCCAGGCTCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5567-6533 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000084.1 Streptomyces sp. XY431 P412contig171.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================== ================== 5567 29 100.0 32 ............................. AGGACGTCGCGCTGCCCGTGGGTGAGCTTCTT 5628 29 100.0 32 ............................. CCGGAGAGCGCGCTCATGATCCGCGACGAAGC 5689 29 100.0 32 ............................. CTCCTCGACACCTCCCCGAAGGCCGACCCGGA 5750 29 100.0 32 ............................. GTCCTCGGCCCGGTCTGGGGAGGCGCGAAGGA 5811 29 100.0 32 ............................. ACCGTTCCCGACTTCTCGTCCTGCGCCACCCA 5872 29 100.0 32 ............................. GCGGTGAGCACCGCCCTGCTCCCCCAGCCCGC 5933 29 100.0 32 ............................. CCCGTACTGCCCGAATCCGAAGGAGCCCCGGC 5994 29 100.0 32 ............................. GTCCCCCGGTAGCTGGCAGTTGCGGGTTGGAC 6055 29 100.0 54 ............................. GCCACCTCGCGGGGTTGGTCCCGCCACCTCGAAGACCGGCCGGGGCCGCAAGTC 6138 29 100.0 32 ............................. TCCCCCAGCGCGCTGATCGCGGCGTCGTGCCG 6199 29 100.0 32 ............................. ACGACGACGACGGCGGCGAACTCGACGGAGAT 6260 29 100.0 32 ............................. TCGACGGAGATTCCGAGTCGGAGTCGGACGGC 6321 29 100.0 32 ............................. GGACCCCTTGGAGCAGGCATACGTCCGAGTCC 6382 29 100.0 33 ............................. AGCGCCAACTCGGCACGGTGCAACAGATGTTGG 6444 29 100.0 32 ............................. GTCGCAGGGTTCCCACTCGCCCGTGGCGGGGT 6505 29 86.2 0 ...........A.GG...........T.. | ========== ====== ====== ====== ============================= ====================================================== ================== 16 29 99.1 34 CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : GCATCCCTCGTGTACACGATGGTGAACGTATCGATTCGGTCGAGGAGGTTCCGGCGGTCCGGTGGACTCGCCGCGCCGGAGAAGCCGGCGCCTCCGGTGCTTCCTTGCGTCCCGAGATCGACTCGCAGTGGACCCACACCGGCAGCGCCACTTTCCTGCCCTGAACCGTAACGCCCTCCCGTTTCAGTCGGTTGCGCGCTCCCGCGTAACCGCCGCGGGACAACTGACGCGCTGTGGCCCTGCGGCAGCGCCCTTGCGACCACGGCTTCCCCGCGCAAGCCGCACTGCGGTCGAGGCAACCGCCTCCATCGGACCCGACGGCGAAGCTGCGAGACCAGGCACGTGCGCGAGCGCGGGGATCAGCCGGAGGACTCGGGCTGCTCGGGTTGGATAAGGTTGGCCGGGTACGCAGCCTGCCTGCAAGGGTGACCGAAATGCCTGAATCCCTGGAAGTTGCAGAATCCCGCCCCCTCGCCGGATAGACCCGCAGCTCATCGACT # Right flank : CGGCTGCAAGGGCCGCGCCTTCGCAGTCGACGCCTACTCCCCGCACAGGCAGACGAGGAGGTTCACATATGCCGGGAGCACACAGGCTGCGAGCGAGTCGGCAATCTGATCGCCGAGGTCGGGTCGGCGGCCAAGACGGCAGCCCTTGCCGAGGCCCACCCATGGCCCGGCCTGCCTCGGCCCGGCCGTCTTCGGGCCCCGGCGAACCGTGAGCAGCCAAGGGCCCGGACCACCCGTTTCCGGGTGGGGAATGCGGACGGGGCCCGGCGCCTGTGTGGCGCCGGGCCCCGTCCGACGGTGGAGCGCCAGGCCCGGGTTGCACGGACTCTTCCTACTGAAAGTAGGACGTGCTCTGGTAGCACCGCTGACGCCTGGCGAGGGATCAGCTCCCTCGCGACGTCAGGAAGATTAGCAGCTCAACGCCCATGCTCCGAATCGCGGACGGCTCGGGACCGGGGTGGAGGCTCAAGCCCTCCGGGGATCTCCTTTCGAGGCCTGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 12927-14024 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDO01000084.1 Streptomyces sp. XY431 P412contig171.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12927 29 100.0 32 ............................. ATCAAACGCGACTGGGCAGCCAACGCCAGGTC 12988 29 100.0 32 ............................. GCGGCGTCGGCCTGGGTGATCAGCCGGGTGTA 13049 29 100.0 32 ............................. GATTCGAGACGGGATCAACCACCTCGGGTGGC 13110 29 100.0 32 ............................. ACCTCCTTCGGTGGCGTGGCGGCGGCAGCCAG 13171 29 100.0 32 ............................. GCCGAGCTGTCCCTCGGCGAACGTGGAGTGGC 13232 29 100.0 33 ............................. GGTGGCGCCGGGGTGATCAGGAGGTTGTTCACA 13294 29 100.0 32 ............................. TGCGCGAGGCCAAGGCCCGGGTCACCGAGGTC 13355 29 100.0 32 ............................. TCCCTCTCCCGTGCCGACATGCCCACGATCTT 13416 29 100.0 32 ............................. CGGCAGAAGTTCTGGTCCACCGGGGAGTCCGA 13477 29 100.0 32 ............................. TGGGAGTTCGACACCGACGGCTACACCGACCG 13538 28 75.9 0 ..............G..ACC.C..C...- - Deletion [13565] 13568 29 96.6 32 ............................G GTGCCGCCGATGGCCTCGACGTACCGGCGCAG 13629 29 100.0 33 ............................. GCCACCCCGACCGCCGCCTCCGGGCCGTCCTCT 13691 29 100.0 32 ............................. GATGTCAGGCCGGTTCGTCGGAGGCCAGGACG 13752 29 100.0 32 ............................. GGCCTTACCGTGCAGGCCGCGCTCGACCGGAT 13813 29 100.0 32 ............................. GCCATCGAGCCCGGAACCCTCTCCGGCTCCAC 13874 29 96.6 32 ....C........................ CTCCACACCACATGATGCGCGCGGAAAACTGG 13935 29 100.0 32 ............................. GACTGGAGCGCTCCGGGGTGGACGTGCGGACG 13996 29 86.2 0 ..................A..GC.A.... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.6 30 CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : CCGGTCGAACCCTGGCTGAGCACGGGGCGGTGGCTCGACGAGGCGCAGCGGCAGAAGGGCGGAGAACGCGGTCGCTGCGGACCCGTTGATCGACGTGGCCGAGGCCGACTACTCCCTCGGCTGCGGCAAGCCCGAACGCGACACACTCTTCGAGGGCTGCGGTCCGCTCCCTACCGATGGCACGGAGCCCTCGACGGCTACCGGCTCCACCGTGCGCTCGAATTGTGGGACTGGTTTCACCCGATCAGCGCTATGGGCTCCTGGACGGCGCCGACGGCGACATCACCCCGGACGGCGAACCAGCGCTCCACCGCGCTGTCGTGCCTCGGGCCAGGCACCGCCCATCGGTGCACTCCGCACGGTGAGTGGAGGCGGGTTCGGCTGGGATGGATAGGGTGACCCTGGTGAGCGCCCTGCTGGCGAAGGTGACCGAAATGCCCGAATCTCTGGAAGTTGCAAAATCCCGCCCCACCGCTGGATAGACCCCCAGCTCATGAACT # Right flank : CACCATCGATCCTGACCGCGCAGCGGTTACCCCCTCCCCATCCCCTTCGCGACGGGCCGCCGGGGTTCGCGTCGACCAACGCCGACCGTGCTGCCGATGTAGAGGTTCCGAGGTGCTCGGAGAGCATAGTCACCTCGGCGGCGTGGCACTCCACGTACTTGACCTTGCGGTCCCGGGCGCCCGAGGAGTCGCGCCGGGCCAGAAGGGTGCTCTGCATCGAGTGGAGTCCCAAGTGGACGCCGTGGTAAGCCTGTTCCACCGGCTCGGGGGCCTCGACGGCAAGGGTGGCCCACGCGGCCTGCAGCAGAACCGAGTGCTCCTGCGCAGCTTGGAAACGACGGTCGGCCTCCGACAGATCCGGGGCGTCGCCTATCAGTGCGCGTACCACCGGGCCTGCGCCACTGGAGGTGCTCGACCTTGGCCTGCCCCTCCAGCTGGCGTCGTGCCGCCCCGCTGGAGATCGCCGACGCGGAGGCAGTGCCGAGAACACCCACCACCGC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //