Array 1 20164-19996 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FOLU01000014.1 Bifidobacterium bifidum strain Calf96, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=================================	===================================	==================
     20163	    33	 100.0	    34	.................................	CAGTGGATTAAGCAATAACTACTGGTACAAACGC 	
     20096	    33	  97.0	    35	........G........................	TGGTCTCCAATCGTGATCTCCACGTCGTCGAAAGA	
     20028	    33	 100.0	     0	.................................	|                                  	
==========	======	======	======	=================================	===================================	==================
         3	    33	  99.0	    35	GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT	                                   	       

# Left flank :   A
# Right flank :  GAAGCGCTGCTGAAGGAAGTCAAGGCCGTGATCGACAATCCGGACGCCACCGCGAAGGACGTCGCGCAGATGCTCAAGCGGATGACGGACTTCGAGTACGAGTATGCGACTCCTGATCCCGATCCTGACCCGGCCCCGGGTCCCGATCCCGACCCGGAACCGGACCCCGACACTCCCGGTACGGATGACCCGTCCAAGCCCGGAACCGGCGACACGGATACGGACAAGCCCGGCAACAAGCCCGGTGACGGAGCGGAAGACAGTGGCAAGACCAACGACAAACCCAAGCCTCCGCTGTCGGCGACCGGCGCGAACGTGACCGCGATATCGGTCGCGGTCATGGCGCTCGCCAGCGCTGCGACGGTGCTGCTGACCATCAAGCGCCGTAGGGGCTGAACATGACCGGTGCCGGAGAGTCCGATGCTCTCCGGCACCGTCATATGTCGAACTCTTGCATAGGGTACCTTAAATCAGCCTGATCTGATAGACTGTCTGCGGGA

# Questionable array : NO	 Score: 8.31
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [7,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.90,-8.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [38.3-1.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [1.42,9   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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