Array 1 1983-1099 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJHI01000079.1 Lactiplantibacillus plantarum strain RI-165 20150702.X-R165_S6_R1_001_(paired)_contig_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1982 28 100.0 34 ............................ CATTAACTAAAAAGGCAGAAGAAGCTGGCTGGTA 1920 28 100.0 32 ............................ TTCGTCGTTTTCGGTGGTTTTGGCGGTTATAA 1860 28 100.0 33 ............................ CGTAACGGTCAATATCAAAATCATTGATATACG 1799 28 100.0 33 ............................ CATTACCACATTTTTGTTCACAATAAAAAAGCA 1738 28 100.0 34 ............................ ACTGCCGTCAGTCAACGGTAAATCGAATTAAAGG 1676 28 100.0 33 ............................ TCATTACCAAGCTTGATCGTTTCGCCAGAAACA 1615 28 100.0 33 ............................ CTTTGATGTCACGTTTAAATAGGTCTTGAATTA 1554 28 100.0 33 ............................ TAAAGGATTAGTGCCTTATACTGGTCTAAGGAG 1493 28 100.0 33 ............................ TAAAATAAAAATATCAAGTACAAAAGTCAGCGA 1432 28 100.0 33 ............................ TTAAAGACTAAACCTATTTTGTCTTGGTGCTGA 1371 28 100.0 33 ............................ TATGCGTATAAATGTAACGTATGTATGAAGATA 1310 28 100.0 34 ............................ CTTATCAGCATAAATCATAAAAGAATCCCCTCGC 1248 28 100.0 33 ............................ CCATGTTCCGCTTGTTAAAAGGCTATCGCACCA 1187 28 100.0 33 ............................ TTAGAAACGCAGGAAATTATAAATAGCCGTTAA 1126 28 78.6 0 ..............T...A..T.T..TT | ========== ====== ====== ====== ============================ ================================== ================== 15 28 98.6 33 GTATTCCCCGCACACGCGGGGGTGATCC # Left flank : CACGCGGGGGTGATCCCAAAATCAAGCCCAACTAAAATTATTTCTAGT # Right flank : TCATTAGGGACTCCTCGAAAGGGTCATTAGAAAAGCCCTGCATTAAAAGATAGTCAATTTTTGGACTTTACTTTGTCGTAATTGGTGATGGTAATCTTGAGTGAGTTAGGTAGTTGCTTTTTATATACATTTATCAAGTGAATGCATCACGGATTTCAGAATTAGCTCATCACATTATTTATATTGTTTAAGGTAGATTGCAAATTTAATCCGAATTTTTTGACAAATTGGTCAGCATGACCTGATAAGGTGTTTGCCAGTCAAGTATTTTAAGGGGACGCTGGTTAATTTCCAGTAACGTCGTGGTTAAATCTTGAGCACTAATGTGCTCAAAATAAGTCCCCTTAGGATAAAAATAGCGTAAGTTCCGATTAAATCGTTCATTACTGCCGCGCTCAGCTGGCGTATAAGCATGGCAGTAATAGGTCTTAATACCGTATTGTGATTCAAGTGATACTAGACCGCTAAACTCAGTGCCACGGTCCACAGTAAAGCTGTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9778-10851 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJHI01000080.1 Lactiplantibacillus plantarum strain RI-165 20150702.X-R165_S6_R1_001_(paired)_contig_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 9778 28 100.0 34 ............................ TCATTTTCTGTTCGAAACTGACTCAACCATTGGC 9840 28 100.0 33 ............................ CCTTTTTGAGTGCTTCTCGTTTTCTTGCCTTTA 9901 28 100.0 33 ............................ CAAGCAGAGTGGACTAAATTGTGGCAGAGAGCC 9962 28 100.0 33 ............................ TGAGCGAAAAGATATTTACAGGGGTTAAAAAAT 10023 28 100.0 36 ............................ TAATAAAGGCGCTAAATCAATCAGAATTAGCGCCCC 10087 28 100.0 33 ............................ TACATTGGGACGATTGTTGAACGGATCATTGTA 10148 28 100.0 33 ............................ CAAATCGAACTGACCGAACAGCTGACACAAATC 10209 28 100.0 34 ............................ ATGGATATAAAAAGACATACCAATCTTTTAAGCT 10271 28 100.0 34 ............................ TCTTTCCACTCATCAGGCGTTCCTTGAACAATGG 10333 28 100.0 34 ............................ ACATCATCGACTACATGGAAGATGACGGTTTTAC 10395 28 100.0 33 ............................ TACTAAAACTATATAAACACTCTAACAAAGATA 10456 28 100.0 34 ............................ CATGGTGCATGTGCAAGCGGTAAAAGCTAATAGG 10518 28 100.0 33 ............................ CAGGATTTAGCATTTGAGCGCCATTATCATTAC 10579 28 100.0 34 ............................ TATACAAAACCAAATAAAGTTGCCGCTAGGTAAG 10641 28 100.0 33 ............................ CGAGATACGGCTAGCATACGCCTGCGTCTTGCC 10702 28 100.0 33 ............................ TTGTTGACGACTTAACCGTTGTTGCAGTTCCTG 10763 28 100.0 33 ............................ TCTTGCGAAAACGCAAAACTTCGCCACAACCCC 10824 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 18 28 100.0 34 GTATTCCCCGCACACGCGGGGGTGATCC # Left flank : GTTTCTACAGATAAAATAATAGCGATTGGTGCTGTCAAATCTTACGGTAGTAATGTTGAAAATTTTTGTCAACTAATTAACACTGATCAAAAAATTCCGACAGCAGTAATCAAGTTAACTGGTTTAACCTCAGAAAAGTTGACTTCCAAAGGCGCTTCTTTAGAAAATGCCTTAAGTGAATTTCAAAAGTTCATTAGTGATTTGCCTTTAGTTGGATACAATATTCATTTCGATGAAATTTTTTTAACGGCAAGCTTTCGAAAAACTAGGTTGGCAAGTTTGGTCAATAATTTTTATGATTTGATGCCAGCCGTTAAAAATAATAATCGGTTTTTAGATAATTACCGCTTAAAAACAGTTTTGGAAACGTATAATATTAAAAACGAAAATTTCCATAATGCGTTGGCAGATGCACAAGCGACTTGTTATTTAGCAGAGCAACTCATAAAAAAAGGAGCTTTTAAATTTTAAGAATGTTGGCATGATGGGATTTGTTTAGT # Right flank : TTTAGCGAGTGAACGAAGTGAACGCTGCAAGCAGTATCTGCTCCTTTTTGGTTTTTGGTCCTGATTTGGCATTTTGGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //