Array 1 163451-161303 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMM01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10231 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163450 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163389 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163328 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163267 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163206 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163145 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163084 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163022 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162961 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162900 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162839 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162778 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162717 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162656 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162595 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162534 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162473 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162412 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162351 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162290 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162229 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162168 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162107 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162046 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161984 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161881 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161820 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161759 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161698 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161637 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161576 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161515 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161454 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161393 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161332 29 96.6 0 A............................ | A [161305] ========== ====== ====== ====== ============================= ========================================================================== ================== 35 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTATCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181075-179582 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMM01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10231 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181074 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 181013 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180952 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180891 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180830 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180769 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180708 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180647 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180586 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180525 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180464 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180403 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180342 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180281 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180220 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 180159 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180097 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180036 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179975 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179914 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179853 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179792 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179731 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179670 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179609 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //