Array 1 178235-177066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062156.1 Stenotrophomonas sp. CW117 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 178234 28 100.0 32 ............................ ATCAAGTCGGCGCCCGGCACCCCGGTCACCTC 178174 28 100.0 32 ............................ TGTGGCGGTCCGGTGCACAGCTGATCGGCGCT 178114 28 100.0 32 ............................ ATCCGCGAGGTATGGAGTCCCGACAACTGCCC 178054 28 100.0 32 ............................ ATTCGACATCGCCGTCGATGTTCGTCCGCTTC 177994 28 100.0 32 ............................ ACCAAGCGACAAGAAGCGCTAGGACAGCTAGC 177934 28 100.0 32 ............................ ATCAGGACGAGATCGCCGTCCTGTGGCGTGTC 177874 28 100.0 32 ............................ TGCCGCGCCCCGGAGCCGGTCGCCTGCTGCGC 177814 28 100.0 32 ............................ ACTTGAAACCTATGCGTATCAACAGTTTCAGT 177754 28 100.0 32 ............................ GTTGTGATCCGGTCATCAATCGGTGTGGGTGA 177694 28 100.0 32 ............................ AGTTCGGGATTGTCGAATTCGCCGTTGATCCT 177634 28 100.0 32 ............................ TGTGGTGACTACCATTTGCCCGCCGGGCACTG 177574 28 96.4 32 ......................G..... GCGCTCAGGTCGTACTGCAGGGCCAGCTTGCC 177514 28 100.0 32 ............................ GATCCGCAGCAGATGGGCAACGCGCTGAACTA 177454 28 96.4 32 ................A........... TTCACGGTGAACTCGGCGAACTCGCCATCGAA 177394 28 100.0 32 ............................ ACCAAGCGACAAGAAGCGCTAGGACAGCTAGC 177334 28 100.0 32 ............................ TGATCGACCAGGGAGCCTCTGTCGCTGGCGCA 177274 28 100.0 32 ............................ TATGGTCGGTGCCAGCGGCAAAGCCACGTCAC 177214 28 100.0 33 ............................ AAGTCGAAAGAGGCTGCAAACTTTCCGCTTTTT 177153 28 96.4 32 ........G................... GACGTGATCGGGCGCGATGCTGCGCTGCTGTT 177093 28 89.3 0 ....G.......G............G.. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.9 32 GTTCCCTGCCGCATAGGCAGCTCAGAAA # Left flank : GCGCCATGGTGCAGCCAGGCGTAGTAGCCGCTGCGTTGCACACCCAACACCCGGCACATCGCTACCAGACGGAACTCCCGGTCGTGCGCGTGCATGAACGCGTACTTCGCCCTTACCCCTTGGCAAAGTACGCGGCGGCTTTTTTTAGGATGTCGCGCTCCTCGGTCACCCGCCGCAGCTCGGCCTTGAGCCGGCGAATCTCAGCCGAATCGCTCAGCACGGCGATAGTGCCCGGTGCACGCACCGTCTTCTTGGCCGCCTGCACCCAGCCGTACAGTGTGTGCTTGGGAATCCCGATCCGGGAGGCTACGTCCACGACTGTAAAGCCGCGCTCGATTACCTGCTTCACCGCCTCTGCGCGGAACTCATCCGTGTACTGCTTGCTGTTGCCCATAAACACCTCGGTCATTGCCATCAATTATGGCGTCCGAGTGTCTACGAAAGGCTGGCCGGTCCACAGCTCAGAAATCCACGCGCTGCTTGTGCCTGACTTCGGCCAC # Right flank : TGAATTTTATATCTTGGATTCTTTTTGACTTCGCTGGCGAGCAACCACCCCAGGAACCTGCGACGGCATCAAGCTAGGCTGCAAGGCTTTATCTTTCATTACGTTTGGCAGCCGCTGCACTTACGCTACTCCATCTGATGTAGGAGAACGCAAGGCATACACCTATCATCCAAATCCGGACGACTACCCTTGGACTCTTTCAGTGAACTCCCTCCGCCCCTTCCTTGACAAAACCCCCACCCTCGGCCAGCGCGTCTACGTCGACCCCGCCTGCACCATCATCGGCGACGTGGTGCTGGGCGATGACGTGTCGGTGTGGCCGGGCACGGTGATCCGGGGCGATGTGAACCATGTGCGCATCGGCGCGCGCACCAACGTGCAGGACGGCACCATCATCCATGTCAGCCACGAGAGCCCGTACAACAAGGGCGGCTACCCCACGCTGATCGGCGAGGGCGTGACCGTGGGGCATGGCTGCATCATCCATGCGTGCAGCATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 180319-179510 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062156.1 Stenotrophomonas sp. CW117 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180318 28 100.0 32 ............................ GCCCGCCCGCAGGGGGTGAGGTGATGGCCCGA 180258 28 100.0 32 ............................ ACAGGCCCTCCTCGGGTCCTGATTCCGCCCTT 180198 28 100.0 32 ............................ TCGTCAAGCCATGAATCAAACTCGCGCTTGAT 180138 28 100.0 32 ............................ TCTGGCTTCCTGCAAAAACAACCTTGTCGAAC 180078 28 100.0 32 ............................ ATCGGATGCAGCACCTTCACCGCTGCGTCGCT 180018 28 100.0 32 ............................ TTAATCCAATCGTTTTCCAGTGGATCGCGCAA 179958 28 100.0 32 ............................ TGCAGGACGGAAAGCCCGTGGTCGAGCACTAC 179898 28 100.0 32 ............................ AAGTCGAGGAATTGTTGGATGGCGCCGGTTAT 179838 28 100.0 33 ............................ ACCGCCTCGAAGTCGCGTTTGGTGAGACTTCTT 179777 28 96.4 32 ..............G............. TGTGGTGACTACCATTTGCCCGCCGGGCACTG 179717 28 96.4 32 ......................G..... GCGCTCAGGTCGTACTGCAGGGCCAGCTTGCC 179657 28 100.0 32 ............................ GATCCGCAGCAGATGGGCAACGCGCTGAACTA 179597 28 96.4 32 ................A........... TTCACGGTGAACTCGGCGAACTCGCCATCGAA 179537 28 75.0 0 ....................TGG.CCGG | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.4 32 GTTCCCTGCCGCATAGGCAGCTCAGAAA # Left flank : CACCCTGCGTCGCTTCCTGCAGGAAGATTGGCTCAAGGGTCTGCGCGACCACGTACGCCTTACCGGAATCAACCCGGTTCCGGAAAGGGCGCCGCAGCGCACCGTGTACCGCCGGCAGTTCAAGACCAACGCCGGACGCCTGCGCCGCCGTCGCATGCTGCGCAAAGGGGAGACCGAACAGCAAGCGCAACAAGCCATCCCCCAGAGCGTTGAGCGCCGCCCTAATCTGCCCTACCTGCACCTGCGCAGCCGCAGCACAGGGCAGCCCTTCTGCCTGTTCGTCGCCCTGGGTCCGTTGGCGAACACCCCCACACCGGGAACGTTCAACAGCCACGGATTGAGCAGCACCAGCACCATCCCGTGGTTCTGACCCTATTTCCAGTGAGTCAGTAGCGCTCTTTTAAAATCAGTGACTTGCGGATGCCCCCAGAAATTTGGGGGCATTCCTCTATTCAGGGATTTCCTTAGCATTACCAATGACTTGACGTGAAATTCCTCTA # Right flank : CCAGAGTTCCGTAGACACTCAGTCGCCGCTCTGCGCGTAGCGCCTCTCAAACTCTACCGGTGACAGTCCGCCAGCGGAACCATGTCGGCGGATGGGGTTGTAGAACATCTCGATGTAGTCGAACACGTCCGATGCAGCAGTGGCCCGTGTCGGATAGATCCTTCGCTTGGTCCGCTCCTTCTTCAATACGCTGAAGAAGCTCTCGGCCACTGCGTTGTCATGGCAGTTCCCGCGACGACTCATGCTCGGCACCATCCGGTGTGCCTTCAGGAACGACTGCCAATCGCTGCTTGTGAACTGGCAGCCCTGGTCGGAGTGGACCATCACCCCAGGCCCAGGCTTGCGGCGCCACGCCGCTGCCACCAACGCCCGCAACACCAGGTCACTGGTCATCGTCGGCGCCGTGGCCCAGCCGACGATCTGGCGCGAGTACAAATCCATCACCGCTGCCAGGAACAGCCAGCCCTCGTAAGTGCGGATGTAGGTGATGTCCGTGACCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //