Array 1 198946-196839 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOW01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 148 NODE_2_length_644359_cov_17.5902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 198945 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 198884 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 198823 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 198762 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 198700 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 198639 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 198578 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 198517 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 198456 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 198395 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 198334 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 198273 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 198212 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 198151 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 198090 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 198029 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 197967 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 197906 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 197844 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 197783 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 197722 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 197661 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 197600 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 197539 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 197478 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 197417 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 197356 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 197295 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 197234 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 197173 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 197112 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 197051 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 196990 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 196929 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 196868 29 89.7 0 A...........TC............... | A [196841] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 216330-215204 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOW01000002.1 Salmonella enterica subsp. enterica serovar Braenderup strain 148 NODE_2_length_644359_cov_17.5902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 216329 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 216268 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 216207 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 216146 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 216085 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 216024 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 215963 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 215902 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 215841 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 215780 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 215719 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 215658 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 215597 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 215536 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 215475 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 215414 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 215353 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 215292 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 215231 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //