Array 1 44419-41025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALML010000016.1 Clostridium perfringens strain CP-28 16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44418 36 86.1 30 A...ACA...A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [44404,44410] 44350 36 100.0 30 .................................... ACTTGTAATGTAGATTCAGTTCTTAATGTT 44284 36 100.0 30 .................................... ATTAAGAAATTAATGGTCTGCTGCACAATC 44218 36 100.0 30 .................................... GAAAATAATCTTTTTAATGAATTCCCACTT 44152 36 100.0 30 .................................... TTAAGAGGAAAACTATGGGAAAAGCGTATG 44086 36 100.0 30 .................................... ATTCTAAAGTAACTACATTAACTTCTAATT 44020 36 100.0 30 .................................... AAGCAAGAGTTAACAGTTGTTAATAACAAA 43954 36 100.0 30 .................................... CCAGGGACTACAGAATATATGTTGAAAATA 43888 36 100.0 29 .................................... TCTTTTTTATCTACATCCCATATTTCCAC 43823 36 100.0 30 .................................... TGTTTAGCTTGCTTAACTGCTAAGCAAAAA 43757 36 100.0 30 .................................... GGGGTAACACTAACATATAAAGAAAATGAA 43691 36 100.0 30 .................................... CAAATTCTTATGAAAAGTTTGTTGAAAAAC 43625 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 43559 36 100.0 29 .................................... AAACTATGAGTGAAAATGCTAAAGGTTCT 43494 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 43428 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 43362 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 43296 36 100.0 30 .................................... TTATAAAATTTAGGAAGATTAGTTACAAGT 43230 36 100.0 30 .................................... GCTGTAGAAATAGCCTCATCTCTTCTTTGT 43164 36 100.0 29 .................................... AAACTATGAGTGAAAATGCTAAAGGTTCT 43099 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 43033 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 42967 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 42901 36 100.0 30 .................................... TTATAAAATTTAGGAAGATTAGTTACAAGT 42835 36 100.0 30 .................................... GCTGTAGAAATAGCCTCATCTCTTCTTTGT 42769 36 100.0 29 .................................... ACATAGAGTTTACGTATGTAGTAGATTCT 42704 36 100.0 30 .................................... AGGATTTTGATAAGAACATAAGAGAAGGCA 42638 36 100.0 29 .................................... CCAAAGCCTTAAACTCATCTATAAAAAAG 42573 36 100.0 30 .................................... TATTTTTTGTAACATAATACACCCCCAAAT 42507 36 100.0 30 .................................... AGCTGAAATGCTTAAACCTATTACAGACGC 42441 36 100.0 29 .................................... TATAAAACTCTTGAATAACACTACCATTA 42376 36 100.0 30 .................................... GTTTCTTTAGTCATATACTTTGTTATATAA 42310 36 100.0 30 .................................... TCTCATTATCGAGAATTATGCCACCTTCTA 42244 36 100.0 30 .................................... TTTGAGTTATTAATGTTTGATGAAGATATT 42178 36 100.0 30 .................................... GAACTTATAGGAGCAGTATTAACAACAGAA 42112 36 100.0 28 .................................... GCATGAATTAATAATGGCTCAATTTGAA 42048 36 100.0 30 .................................... GATGAAATAAACCAAGCTAAATTGAAGTTA 41982 36 100.0 29 .................................... TTAAATCGTTGTTTAAGTATCTCATAGCC 41917 36 100.0 30 .................................... AACTCTTTCTTTAGCTCTAATCCTATAGGT 41851 36 100.0 30 .................................... GATGTTGAGGGAGATGATGTTATTTTAAGA 41785 36 100.0 30 .................................... ACTGATAATATGGGAGTTAAACATAAATTG 41719 36 100.0 30 .................................... TTAAGAAAATTATACCACTTTTGAATAAAG 41653 36 100.0 29 .................................... ACATAGGAGAGGAAATTGAGAGATTACCC 41588 36 100.0 30 .................................... TACTTATAATTATTTAAATAGTGCTAGAGT 41522 36 100.0 30 .................................... GAGAATGATGTTGCTAATAATGAAAAAATA 41456 36 100.0 30 .................................... TTAAAAGGTGCATTAACTCCAATGCTCTTG 41390 36 100.0 30 .................................... GTAAGAATGGGATTTGTCTTGGCTCCTCAT 41324 36 100.0 30 .................................... TTATATTAGTTACTCAAAATGATAGGCTTA 41258 36 100.0 30 .................................... AAGAGTTAGTACGGAGGAGCAGAACGAAAG 41192 36 100.0 30 .................................... GATGTTGCGAGTTATTCTGTGCATAGAAAT 41126 36 100.0 30 .................................... TATTTATATTGTGTGAAGTATAAAGATGGT 41060 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 52 36 99.7 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : AGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-96.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //