Array 1 22277-21318 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIBD01000042.1 Lactobacillus johnsonii strain UMNLJ114 SNF2W3B3M6S23143_Average_coverage:_150.18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 22276 32 100.0 34 ................................ GATCTAAAGCCGCTTTGGTTACATAAGTGAATGC 22210 32 100.0 34 ................................ GGTCAATGATTAACTTTAACGGTCAGCAATTTGG 22144 32 100.0 35 ................................ ATGTCGCTCTAGTTGATCGATCCATTCAAGCTTGA 22077 32 100.0 34 ................................ AAACTATAGGCTAAGTGACAAACTTAGTAACTGT 22011 32 100.0 35 ................................ ATATGATAATTATTAGGATAACCAAATAAACGTAA 21944 32 100.0 33 ................................ TAATATAGATCCAAAGCACTTCAATCTGATTAA 21879 32 100.0 35 ................................ CACTCTAGATGATAGTAAAGATTATGATTTTGAAA 21812 32 100.0 34 ................................ TAGCAATTGCGTTCAAGAAGTCCTCGGTCTTAAC 21746 32 100.0 34 ................................ ATATAGATATCCATGATGCTAAGTGGGGTAGTGA 21680 32 100.0 34 ................................ TCTAAATTATTTAGTCAACGTCAAGCTGCAAATA 21614 32 100.0 34 ................................ TCATACGAGAGAGTGGGCTTCTTCTTTAAAAGGC 21548 32 100.0 34 ................................ AGTAGCTACCGCTTTAATTGACGGTAAATCATTT 21482 32 100.0 35 ................................ ATAGAATGCGACTTGTCATCTTCGGTTACCGTTAC 21415 32 100.0 34 ................................ AAACAACAAGGAACAGAAGAGCAACAAGACCAGA 21349 32 81.2 0 ..........G.A.......A.A....T..G. | ========== ====== ====== ====== ================================ =================================== ================== 15 32 98.7 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : ATGGATGAGTACCCGCCATTCTTCTGGAAATAGGTAATTAAAATGATGATGGTAATAGTAAGTTACGATGTGAAAACTAGTGATCCTGATGGAGCTAAGAGATTACGTCATATCGCTAAAATCTGTCAAAATTATGGAGTTAGAGTCCAAAATTCCGTTTTTGAATGTTTAGTTGATACAGCAAATTTGGAATTGTTAAAAGAAAAGCTATTAGATCAGATAGATGAGACAAAAGATAGTTTGTATTTTTTTAATATTGGTAAAAAATATCATCATAAAATTGAGAAGTTTGGCAGTAAAGATGTGATTGATTTAGATGGACCAATTATCTTTTAAAATGTTTTTTGCGAACTATAAGTAAACAAGATTATTCTACGAGATTCGCACTGAGATTTTAATAATAAGGTATATATTATTGGCAATTATATACGTTATTTAAAAATTTTATTTGTTGACATCGTAAATGTTGATAGAATGTTTTGTTTTATCAATATGTTGCG # Right flank : AATATGTATTTTTGATGAATTAGATGCCGCTCTCTATTTGTTATAGGAGATACTGTAATTAAAATATTTTTAAATGCATAATATTTATAAAGATAAAAAAGTATAAAGTAAACTTAAAGTAGTACTTGGAGTGAAAAGAATGCTTTATAAACAAATTGAACAGAATAAACGAAATACTTGGATTATTTTAGGTCTATATACCTTGTTGATACTAATAATAAGTATTTTTCTTGGGATGCTTTTTACAGTTTATATTGGAGGGTTGTTCTTTGTTATAGGTTTGATTTACATTGCACACGTCTATTTTGATGCAACTCGCCATCTTATGAAAGTAACAAATGCTGTTGAAATCACTAAAGAAACAGAGCCCCAAATTTATGAATTAGTTGAAGAACTCTGTTTAGCCGGTGGGTTGCCAGTTCCAAAATTATATATTACTCCTGATCAGGCGCCGAATGCTTTTGCTACCGGACGCGATCCACAACATGCAAGTTTAGCTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 41652-41797 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIBD01000002.1 Lactobacillus johnsonii strain UMNLJ114 SNF2W3B3M6S2312_Average_coverage:_249.96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 41652 24 100.0 37 ........................ GTAATTCATATGGACGAGCAGGGCGCACCACAGGATC 41713 24 100.0 37 ........................ CTTTTCTCTTGATGCACAAATTGTCGAAATTGGGATC 41774 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 100.0 38 ATCTCCACACACGTGGAGAATACA # Left flank : AGCCTGCGACAAAATTTTTGATACCGATGGTTTTTCGTTACCGACCAACAACGAGAAGTGTTTGGGTTGACACATAACCTCATCCGACGGACAAATTACATAGCCTGAATTTTTTCAACTGGTTAAGCGCAAGATATTGTCGACTCAAATCGATCCAATACCTAATTTTGCTTAACAACTACAATCCTAAGATTTCTTATGCCCCGATGAACTGCCGCTTGCGAAGCCTAAAGCAGAAAGTTTACTCTTTCCACAGTAGGGTCCACCATATAGGTCTTATAGGTCTCCTTACCCAACCCAACGTATTCTTATGGATCAGTTAATGCAAGGAGCAGTGCCGCATTCCAAAGTTTGCAGCACCCACATCTCCGCGTATGTGGTTCCTACGTTAATATTCAATTGTCAATGTACTACGTGGACTTGATTATTTTTAGTCGGCAAGCCTTCCGACCAATAGGGTTACCAGGATTTGAACCTGGATCGTTAAGAGGATCAGGAGT # Right flank : ACTAAAAGATCCTTGATTAACTGCTTACCATTAGCATATAACCCTAGAATAAGATGAACTAAGAGATCATCTTATATGTATGTAAATTAAAATTTAGATTTTTTTTGCTGGTTTTTCAGCAATAGAGTTACCAGGAGTCGAACCCGGATTTTCAGTCATTGTTAAAAACTTGGATTTGGAAAAGAATAAATTCATCAATATTATCAAAAAACAAAAATCATAAATAATTATATGACCTAGAAAAAGCTTAAAATTAAAACTAGAAATTAAAGACTGATTGCCTACCTATTGGCAGATAACTCTATAAAAAAGCTTTTCAGCTTTTTCACTACTCTATCCTTGTAGTTTTTCATTACGGGAGAAAAATATAGATATATAAATTATGTTTGCTGATTTCTCGATCAGCAACAGAGCTACTAGGAGTCGAACCCAGATAGAAAGTTTTGAAGACTTTCTGTTTTCCGTTAGCGTATAGCTCTACGTTTAAAAACGTGAAAATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCACACACGTGGAGAATACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //