Array 1 1537991-1537700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDG010000001.1 Clostridium botulinum strain KM90-1-8G-F 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1537990 29 100.0 37 ............................. GTCCTTTCTTTTGTTTTATCTATAAATAAAGTAAGAG 1537924 29 89.7 37 ......T.......GA............. TTTATTGCTTTACTAATTGTCCGTAGATCTTTTTTAG 1537858 29 89.7 36 ......C.......GA............. TTGTATTCATTTATTGTATTCTTAAATACATTCTCG 1537793 29 100.0 36 ............................. CCATAAATATCTAATACAGAAAACTTAGAAGATACA 1537728 29 79.3 0 ....G..A......GA...........GC | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 91.7 37 TTGAACATTAACATAGGATGTATTTAAAT # Left flank : TGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATAATTCGGATTCAGCTTCTATGTTTCCCATAGCCGCGTTGAACAGTAACATAAGATGTATTTAAATTCTAATGTAAAATATTCTATTGTCCTATCTTTATCTAGTTGAACAGTAACATAAGATGTATTTAAATCTTAATTCGTGAAGTACTTCTAACATCTGATTATGTGTTGAACATTAACATAAGATGTATTTAAGCAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTGCTTCTTGGAGGAGAGGAGTAGGAGTTTCATTAATTGAATTTTTCCAGGTGCAATAAATTTGCGAGCCTATTCTAGACGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGATA # Right flank : AGAGAACTTTAATATGTAATTTGGTGTGAGTCGCTTACTCTTTGGAAGCAACGAGAAGGAGTTTTATAAATTGAATTTTCCAGGCGTAATAAATTTTAAAACTTATTCTAGCTATTGAAATATAAGGCTTAGAATAGGTTCTTGTTATGTCTTTATAAAAAATGGGAATTAGTTGGAAAATTTTCTATAAAACCTTGTAAAATCAGTGGGTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGATTGAACATTAACATAGGATGTATTTAAATGCGTGATTAGTTCCTTTTACTCCTTCGTAAATCAATATTCAACATTAACATAGGATGTATTTAAGCAGAGAACCCAAATCTACGATTTGGTGTGAATCGCTTACTCTTTAGAGAATGGCATAGGGATTTTTATAAAACTAAACTATGCATTATGATAACTTCTATATAAATTATTAGATAAAGGGGGATTTTATGAAAAATAAAGTTACTAATAATTT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 1538475-1538247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDG010000001.1 Clostridium botulinum strain KM90-1-8G-F 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1538474 30 100.0 35 .............................. AATTCGGATTCAGCTTCTATGTTTCCCATAGCCGC 1538409 30 100.0 37 .............................. TCTAATGTAAAATATTCTATTGTCCTATCTTTATCTA 1538342 30 100.0 36 .............................. CTTAATTCGTGAAGTACTTCTAACATCTGATTATGT 1538276 30 90.0 0 ........T...................GC | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 97.5 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : CAAAAGCCTATATCCATGTATTTACTTTGTTTTTTGTAGTAAACATTTATGATATGATTGTTCTAGATATAGGTCTTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAAGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTAGAGGAATGGTTCATTTTATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTACTTTGAGAATTGGAGAAGTAGTTTCATAAATTAAATTTTCCAACCACAATAAATTTAGAAACCTATTCTAGCCATTGGTATATAAGGCTTAGAATAAGTTTTTGTCATATGTTTTTGAAAAAATAAAATCACTTGGAAAATTTTCTATAAAACCTTGTAAAATCGATACTTATATGTTATTCTTAAAACTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTGCTTCTTGGAGGAGAGGAGTAGGAGTTTCATTAATTGAATTTTTCCAGGTGCAATAAATTTGCGAGCCTATTCTAGACGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGAAAACTTTTTCTAGAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATGATATTGAACATTAACATAGGATGTATTTAAATGTCCTTTCTTTTGTTTTATCTATAAATAAAGTAAGAGTTGAACTTTAACATGAGATGTATTTAAATTTTATTGCTTTACTAATTGTCCGTAGATCTTTTTTAGTTGAACCTTAACATGAGATGTATTTAAATTTGTATTCATTTATTGTATTCTTAAATACATTCTCGTTGAACATTAACATAGGATGTATTTAAATCCATAAATATCTAATACA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 1545344-1545056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDG010000001.1 Clostridium botulinum strain KM90-1-8G-F 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1545343 28 96.4 36 ...............G............ ATAAGCTAAGTACATATTCACATGCATATTTATTAT 1545279 28 100.0 37 ............................ ATTAGTCTAACGGTGTGGCTAGTATATCTTCATGTCC 1545214 28 100.0 38 ............................ ATTAATATCACCTATTTACTTTTTTCATCTTCTTTAAC 1545148 28 100.0 37 ............................ ATTCAATTAAATCTATAACTATTTCTATTTCATCTAT 1545083 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ====================================== ================== 5 28 98.6 37 GTTGAACAATAACATAAGATGTATTTAA # Left flank : AAATCACTTGGAAAAATCTCTATAGAATATTGTAAAATTAATGGTTATATGATATTCTTAAAAATAAGAAATGGTCATTTTACTATGGTTGAGCAGTAACATGAGATGTATTTAAATGTATCTAATATCTTGCAATGTCTATTGGCTCCTCTCTTGAACATTAACATGGGATGTATTTAAATATTCTTGCCTTTTCTATTTGTAGCTCTATACTATTTGTTGAACATTAACATGAGATGTATTTAAGCAGGGAACCCAAATTTACAATTTGGTGTGAGTCACTTACTCTTTAGAGGTAACGAAAAGGAGTTTCATAAATTTAATTTTCCCAGGTGTAACAAATTCAGAGCCTATTCTAGCCATTGATATATAAGGCTTTGGATAGGATTTTATTTTGTATTTACAAAAAAGCAAAATCACTTGGGAAACTTTCTACAAAACCTTGTAAAATCAATGCTTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : GCATAGAACCCCAATCTGTGATTTAGGATGAATCTCTTACTCATTGAGATATGGAGAATCAGTTTCATAAAACAAGTGAATCTGAGTAGATTTTTATTGACTAAAATATTTTTAAAATTTAGTTTTAATTTTGGCTATGCTTTAGAGTGGTATTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGAGTCTATATAAATTGTTAGATACTAGTTATTTAAAAATTTTTTCAATGAATCATTATCTTTAGATAAGTCTTTTAAGTTTCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTGTCTACATTAAATTTAATAATTTCAGCGTTTGGTATAAGAGATAATAATACTACCGCATTCTTTTCTAAAAGCTTGTCAGCTTTTTTGTCACTCCAAAATTTATTATAATTTTCTTCACCTAAATTTTCATTCGCTTTATAGTTAACAGTTATTTCATATGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 1546330-1546037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDG010000001.1 Clostridium botulinum strain KM90-1-8G-F 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1546329 30 100.0 36 .............................. CAAACTGCTTCTAAAGTATCTCCAATTTCTTCACCT 1546263 30 96.7 35 ......T....................... ATTATGATGGTGATATAGTTTATGATAGCGATAAG 1546198 30 100.0 36 .............................. TTGTATATTCTTTTCCATCTATTGTAACTGGTGTTC 1546132 30 96.7 36 .......C...................... TTATATAAATCATCAAAAGCGTTATTTTTTTCTAAA 1546066 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 97.3 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : TGAAATCTTGTAAAATCAATGGGTATATGATATTTTTAGAAATAAGGAATGGCTATTTTACTATGATTGAACAATAACATAAGATGTATTTAAATAAAAGATAAGGAGGGTAAATCAAGAAGGATATTTTTATTGAACAATAACATAAGATGTATTTAAAATTCATTTGACGACCATATGTAGAAATAAGGAAGGATGTTGAACAATAACATATGAGGTATTTAAGCAGTAAACCCAAATCTTTGATTTCGCGTGAGTCGCTTACTCCTTCGAGAATAGGAGAAGGAGTTTCGTTAATGAGCATAGTATATATCTAATTAAATTTTTCCAAGTGAATTTAAAATTAAAATCTATTATAGCTATTGATATGTAAGGCTTAGAATAGGTTTTTATTGTGAGTTTTTAAAAAAGCAAAATCAGTTGGAAAATTTTCTATAAAACTTTGTAAAATCAACACTTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : AGGGAAGCAAAATCTCTAATTTATCGTGAGTCGTTTACTCCTTCGAAAAATAAGAGAAGTAGTTTCATTAATGAGCAGAGATATATTTTATATTTAACTAATTTTTTTCACGTGAATTCAATTTTAAAATCTATTCTAGCTATTGAAATGTAAGTCTTAGAATAGGTTTTTATTATGTATTTATGAAAAAACAAAATCACTTGGAAAAATCTCTATAGAATATTGTAAAATTAATGGTTATATGATATTCTTAAAAATAAGAAATGGTCATTTTACTATGGTTGAGCAGTAACATGAGATGTATTTAAATGTATCTAATATCTTGCAATGTCTATTGGCTCCTCTCTTGAACATTAACATGGGATGTATTTAAATATTCTTGCCTTTTCTATTTGTAGCTCTATACTATTTGTTGAACATTAACATGAGATGTATTTAAGCAGGGAACCCAAATTTACAATTTGGTGTGAGTCACTTACTCTTTAGAGGTAACGAAAAGG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 1559881-1559586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDG010000001.1 Clostridium botulinum strain KM90-1-8G-F 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1559880 30 93.3 35 ...A.............T............ TGGGAAAATATACTTGCAACTAATCAAGAAATACC 1559815 30 100.0 36 .............................. CAAATAAGGAAAAAGAATATCTTATACACCCCCGGG 1559749 30 100.0 37 .............................. CCAAATTCTCTGCCAGATCCTTCAAATTCACTAAGTC 1559682 30 90.0 36 ............T..A....A......... TTGCACGTCCCATAAGGGGACTGATATCAAACTGTT 1559616 29 76.7 0 ........A......A.T..A.-.AA.... | GT [1559610] ========== ====== ====== ====== ============================== ===================================== ================== 5 30 92.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCGGATTTGCATTTAAAGAGGTAAAAGGTGGAGAAGAAAAAAGATTTGATATAGTAATAACCTATAATAAAAAAATGTATATTTTAGAACTTAAAATATGGAGAGGTGAAGAGTATCATAAAAAAGGCTTAATACAGCTAGCAGAATATTTAGAGCAATATAAATTAGATAAAGGGTACCTTTTAATATTTGATCTAAGAAAATCCACAAATTTAATAGTAGAAGTAGAAGAAAACTATATAGGTATAGAAAATAATAGTAAAAAAATAATACAGGTTTATTGTTAAAAAGTATATAGCAGTTAAAAATTATTTCTAAATATTTTTCCAAGTGAATTAAAAGTCTAAACCTATTCTAGCCATTGAAATATAAGGCCTAGGATAGGTTTTTATTATGAAATTTTAAAAAACAAAATCACTTGGAAAAATTTCTATAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TAATATGATATATAATAAGAATCATTAAAAGTCTTAGAAGAATCTAAGGCTTTTATTTTATGCAAAGCTTTAGAATGAAATATGATAGGTAATTAACTTATCATTAATAAAGATAATAATATTTTTAAAATAAAAGTAGAATAATTAGTTATATTAACTAAAGGGCATATGGTATAATATAGATAAATTTGTATAAAGAGGTGTATAAATGGAATTTTGGGAACTGATTGTAACAGCGATGTTGAAAAAAGACATATATTTTGAAGATTGTGGGTATATAATAGGGAAAAATATAAATAAAAGTATGCTTTGGGATAAGGACTTAAAGGAAGTACATCCAAAGAAACAGTATAAAAATTATGTGTTTAATAGTTTTTATCCTATAGAAAGAGATAAATTTTATAAAAAAGATAGGTTGTATATTTTTAATATTAGGGGATTAAGTAAAGAATTTATAGATAAAATAGAAACTTGCTTATGTAATTTAGAAAGTAATGATT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //