Array 1 670558-672035 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_016012.1 Candidatus Arthromitus sp. SFB-rat-Yit, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
    670558	    32	 100.0	    35	................................	CCCCAATTATAACACCTGCCGTAATACCTATTACT	
    670625	    32	 100.0	    34	................................	TCTAATGTAATTATAAACATCTTTAGTGCTAACT 	
    670691	    32	 100.0	    35	................................	CATATACGATATCCGGAAGAAAATTGCCTGAATAG	
    670758	    32	 100.0	    33	................................	AATAAGTAGTGTTGCATCTAGCATGGGATACTC  	
    670823	    32	 100.0	    35	................................	TGAAAATAATTTTAAGGAATTGAAAGTAGGGGGAG	
    670890	    32	 100.0	    33	................................	CATCTTATAATCTGCTATTTGCTTAGCTACATT  	
    670955	    32	 100.0	    35	................................	ATCATCGTTTATATTTGTTGATATTACCCCACTTG	
    671022	    32	 100.0	    33	................................	CCATGCCCTTGTGGTATTAGTTTTAGACTTGAG  	
    671087	    32	 100.0	    33	................................	AACCTTCACTTTTGTGTTTGTAATAAAACTTAT  	
    671152	    32	 100.0	    33	................................	CGAAATTTACTGTTAAAACAAATGTTGGCAAAA  	
    671217	    32	 100.0	    33	................................	TACGAGCTTGGCTCTCTAGTTTTTTCTGTTCTT  	
    671282	    32	 100.0	    33	................................	TATATCAGTTGGTGGAGATGGAGAGTCTGGAGG  	
    671347	    32	 100.0	    33	................................	TTTTGATAGTTTATTAACTACTTCAAAGTACTT  	
    671412	    32	 100.0	    35	................................	ATGTGGAGGGTTGGAAAGAGGTTTTAGAGTTTATT	
    671479	    32	 100.0	    33	................................	TTTCATTTTTTTACTTTTACTTTTAAAATATAA  	
    671544	    32	 100.0	    35	................................	GTTAGCTCCATATTGGGACATTCCAACACCATGAC	
    671611	    32	 100.0	    33	................................	ACTGGATCTACCTTAGATACAACCACAACCAAA  	
    671676	    32	 100.0	    33	................................	CTTCATAAAATACACAATCTTCAATATAAATAT  	
    671741	    32	 100.0	    35	................................	TCTAATATCATTTTTAACCTTCCTTTTTTAATTGA	
    671808	    32	 100.0	    34	................................	ACGTGCATGATGAGATAATACTTGAAACGGATAA 	
    671874	    32	 100.0	    33	................................	AAAGAGTATGACGGCGTATTAAGTATACGTTTA  	
    671939	    32	 100.0	    33	................................	CAGAGTGTCCTGGACAAATTTCAATATTTGATC  	
    672004	    32	  96.9	     0	..............................G.	|                                  	
==========	======	======	======	================================	===================================	==================
        23	    32	  99.9	    34	GTCGCACCTCACGCAGGTGCGTGGATTGAAAT	                                   	       

# Left flank :   GAATATCCACCATATTTAATGAAGTGATGAGGTGATACAGTGCTTATTTTGGTTACATATGATGTGAAAATAAATTTTGAAGATGGGGAAAAAAGACTTAGAAAAGTATCTAAAATTTGTGAAAATTATGGAATTAGAGTTCAAAACTCTGTTTTTGAGTGTGTAGTTGATAATATGCAATTTGAAATGTTGAAGTCAGAGATAGGTAAGGTAATGGATAAGGAACAAGATAGTGTTAGATACTATAATTTAGGTAAATCTGGAAGAAATAAGGTGATTCATGTAGGAAGTAAAAATTCTATTGATGTTGAGGATGTTATTATAATTTAATTGCGAAGTATAAGCTTACATAAAATTTCTAGAATGGTTCGCAAGATCTTATTAATACTGAATTAAATAAAATTATTATATGTTGAAATTTATAAAAAATTGTGTAAAATTATATTGTTCGCATAAATAGTGTTTTTATTTATGATTGATACTTATTTTAAAATTTAACG
# Right flank :  TTGGATTTTATTATTTCATAGAGAGCAAGAGGGTGAGTGAAAAATATATGATTGGTTGATGGATTATGTATAAGGCGAGAGAGTGTCTTCCGATCCATTCAAGAAATTTGAATTTACTTGGAGTTAAATATCTGAGTAGATTGTGATGCTTAGCTATTTCATATGAAAAATATCCAGTGATATATAAAAATATCCATGGCATCAGTGGAAAGTAGTCTGATGAATAAAAGTTTGGCATAGGAAATCCTAAATATGTAGTTAAAGAATTTTTGTATAAGTTTCTTGGTAAATTTATAAAATTCAAATTTCCAAATCCGATATTGCCTTTATTGATATTTTTTGTTAATAGAAAAAGGATTGCGAAGAGAATTAGCCCAAAAGTTTTTGGGAATTTTCCTAAAAATTTTCTTAAAGGAATCATCAAAATCGTAGATGATCCGATTAATGTTAAAATTCCAAATCTTACTTGGCTTTGTGGAGTTACGATCATTGTAACAATT

# Questionable array : NO	 Score: 9.26
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCTCACGCAGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-8.00,-8.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.68,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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