Array 1 77619-80031 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMO010000007.1 Bifidobacterium longum strain MSK.11.48 NODE_7_length_149460_cov_386.422, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 77619 36 100.0 28 .................................... TCGGACGGCTGGCCTCGTTTCTCCATCT 77683 36 100.0 28 .................................... AGAACGCCGGAAAGCTGTTCTAGCGGCC 77747 36 100.0 28 .................................... TCCGCAGCAGCCTGCCGCGCTTGAAGAT 77811 36 100.0 29 .................................... ACTACACGCGGTGGACGCCCGGCACGAAA 77876 36 100.0 28 .................................... ATGCACGCGATGGAGTCATGTCCAATGA 77940 36 100.0 28 .................................... AGAAAATGCCCGGTCTCGATCTGATACA 78004 36 97.2 28 .................................G.. TGCTTGAGCCTGGCCCAGCCGCCCGTGG 78068 36 100.0 28 .................................... TAGAGAATGAGATTAAGAATTGCTAAAG 78132 36 100.0 29 .................................... GGGCACAACGACCCCCGCGTAACACCAAT 78197 36 100.0 29 .................................... CCACGAAAAGAAGCCGGTAACGGCATTGC 78262 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 78326 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 78390 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 78455 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 78519 36 97.2 28 ......A............................. CCGAGGCCGGTAGGGTTGCGTGTCTGGT 78583 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 78647 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 78711 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 78775 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 78839 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 78903 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 78967 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 79031 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 79096 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 79160 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 79224 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 79289 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 79353 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 79417 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 79481 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 79546 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 79611 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 79675 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 79740 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 79804 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 79868 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 79932 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 79996 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 38 36 99.5 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAACATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //