Array 1 18535-21336 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV765903.1 Mycoplasma ovipneumoniae strain TC2 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================== ================== 18535 36 100.0 30 .................................... TCCCCGAGATTTAATAAATAATACTCCTAT 18601 36 100.0 30 .................................... TGTTCGCTAAAAATTGTTGATATCAAGTTT 18667 36 100.0 30 .................................... CCTTTTTATTTGACCGTCGTGCCTTGCAGA 18733 36 100.0 30 .................................... AGACTTAGTAAAAAAACTTAGTGAGGAATA 18799 36 100.0 30 .................................... AGAAGTAAATAAGGAAGTGTATTCATATGT 18865 36 100.0 30 .................................... ATAATAATAGACATGTTGTTCGTCTGATTC 18931 36 100.0 30 .................................... TATTTTGCACCAGTTCTCTCGGAGCAAAAC 18997 36 100.0 30 .................................... ATCCTTTTTATGCTGCCTCGGGTGAAGACG 19063 36 100.0 30 .................................... TTAAATTTTGATAAGTAATAGTGCTTGTAC 19129 36 100.0 30 .................................... AAATATTCAAAAACCCAAAGTCCCCATACC 19195 36 100.0 30 .................................... CCAATTCGTCGCTTTTTGCAGCGTAGTGGA 19261 36 100.0 30 .................................... CAAAACTATAGAGATATAGCGGAGGCTAAC 19327 36 100.0 30 .................................... ACTAAAAAATGAAAATAACTCAAAACCCCC 19393 36 100.0 30 .................................... AAACGGAGAGTGTTTGCTCAGGTAGTTAGT 19459 36 97.2 31 ........................T........... TTACTAAGTAATATAGTTGCCTTTAAAGAGG 19526 36 100.0 30 .................................... GATAACATGTTTAATTTATGGAGTAATATA 19592 36 100.0 30 .................................... ATTTTCTCAGTTATTCAATTTGAAATTTCT 19658 36 100.0 30 .................................... ATAGTCATAGTTATTATTATATACAGATAC 19724 36 100.0 30 .................................... TTAAAAAGTTTTGACTTGATATTCCAAAAG 19790 36 97.2 29 ........................T........... ATAACAGAGAATTATGTCTCAGAAAATAC 19855 36 94.4 30 .........T..............T........... ACATTCCTTGGCACTTTTATCGGTGCAACT 19921 36 94.4 30 .........T..............T........... TCCTTCTGTTAAACAAACTTTCGAACAAGT 19987 36 97.2 30 ........A........................... AAGTCGCGTAAAGTAAAGCAGTCTCGGTAG 20053 36 97.2 30 ........A........................... AGGTATTAAATTTTTTGAGTTTGTAGATCC 20119 36 97.2 30 ...........A........................ AAGGTGACAAAGGAGAACGTGGAGAGCAAG 20185 36 97.2 30 ...........A........................ AATTTTTAACTAATGTTTTTTGGATTTTTG 20251 36 94.4 30 .........T..........T............... AATTTTACTCTTGGAGAGCATCTCTATGCC 20317 36 88.9 30 A........T..........T..........G.... AGAAGTAATCTCCGATATAACAACCGGGCA 20383 36 97.2 30 .........T.......................... TAATAGTGATCAAAAAACTAGGTATAAGGC 20449 36 100.0 30 .................................... ATAAGTCCCCTCAAAAAACGGACTAATTTG 20515 36 100.0 30 .................................... ACCGAATATAATGGTTAAGAGGTTTAGAGT 20581 36 100.0 30 .................................... GTTTTTACGTTCGGCTTTAAATTCTTTTGG 20647 36 100.0 30 .................................... TTTTTTTAGGTAAATTTATACTCAGGTTTG 20713 36 100.0 31 .................................... TTCAAAAACCAAAAATCCCCACCCTCGGCAC 20780 36 100.0 30 .................................... TCTATTGTATATAGTCTAATTTGTGCTTTA 20846 36 100.0 30 .................................... CACTTTATTTTGTAAGTATTGGTCGTTTTG 20912 36 100.0 30 .................................... ATTCTAAGGCGTTTTAGGCATGTTTTAGCA 20978 36 100.0 30 .................................... TAGTTCTTATTGAGATTGAACTTTTACTGA 21044 36 97.2 85 T................................... TGAAGACATGAGGAAACGTATGAAAAAAACATGTATGTAATAAAAATGCATTTTAGAGTAAAGGCAAGACGCAAGGGCAATTATA 21165 36 72.2 33 ..CA....TTA...G...A.T...T..T........ AACATTTAGAAAAGAGAACCTTAAAATGCCGTT 21234 36 72.2 31 ...C.G.C...........CA...A.T..AC....T GGCTCTACCAACATGTTACCACTTATGGCTT 21301 36 77.8 0 A.CA.CC.....C................C....T. | ========== ====== ====== ====== ==================================== ===================================================================================== ================== 42 36 96.9 31 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : TTTAAATTATGAAATTGATAATGTAAAACTAATTAAAGCAATTTTTAACATCGAAAATGATATATTAATAAATAAGGAAAACTTTGAGAATCTTGCCGAAATTATTTTTAGTACAATGAAACAGACAATTGTAATTCTGAAAGATCTTGATTATATAAAATTTGAAAAACTGTTTAAATATAATAATATAACTTTCCTAATTTTGACAAACGATTTTACAAAATATATTTCTAAATTTAGCGAACTTGAATTAGTTGCTTTTTATTCACAGAAAACTGTAATTGATGTAATTGATAATTTGCCGATTATTCGTTATTTTGAAAATCTCAAAAATCGGCCTGTTAATGAAGATGAGTTAATATTCACTTCTGAAGAAGAGAAAATGGCAACAAAAATTCATTTTTACAAAATAAAAAAAAGTTTTTTAAACTAAAAACGTTTTTATAATTGATTTTTTAGTTTAAAAATTTGAAAAAATACCTTTTTTTCTTAGAAATGAG # Right flank : CCTAATCACAAATTTTAATAACTTTAAAATTTTTTGTAGTTTTAGTTTTTTTGTGATAGAATATTAGCGTCATGCCCGGTTACCATTTTTATCAGCCTCCTTTATGGGCTTGTCTCGAAACAAAAAATCCAAAGACCGCCATGGCGCACTCCCGAAAAATTGAATACAAATTTAATCCAAAAATTATTTGAGTATTTAAAAAATGAAAATACAAATTAGATAAATTAATGAAATAGGAGTAAAAAAATGGATATAGTTAAACTTGAAATCCAAAATTTATCAACAAAAGATAAAAATGAATTAATTGAAGATATAAATGGATTTGGGTCTAAAAAAATTGATCCAAATAATTTNTCTAAAAAAATTGATCTAAATAATTTAGATAAATTGTTAGAGTCTTATTTTCGAAATTCTCCTGACGAGTTTACTGCTTTTCGAAAGCGTTATAAATATTCCCTTTACAACCAAAGTATCCAAGAAAATGATTCTAAACACTTAGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 24794-25160 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV765903.1 Mycoplasma ovipneumoniae strain TC2 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 24794 36 91.7 30 CG.......T.......................... TTGTAATACTAAGGCAAAATAAATTCCATA 24860 36 100.0 30 .................................... TAGAATGCCCACTTTGCCTTTTTCAAGATA 24926 36 97.2 29 .........T.......................... TGCACTGAGTTTTAATTTTTTGAAGTAGT 24991 36 100.0 30 .................................... TGTTGCACTTTTAAATGAAAATAGTTGATT 25057 36 97.2 31 ..................................T. ACTAGTTTAATCGAATTTGCTAGTCAATTCA 25124 36 88.9 0 .........T..........T...T.........T. | T [25158] ========== ====== ====== ====== ==================================== =============================== ================== 6 36 95.8 30 GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Left flank : TTTAAATGATCAAGAGCTTGCGCCTAGACTTCTTAAGCGACATCGAAAAGCTCTTGACCCTCATTACAAAGTCAATAGATGAATTGAAAAAAAAAATATGACCTTAAATTAGCACAAAAAGATAATTCAAAGCAAACCAAAAAATTCAAAGCACCAAAAAAGAAAATGTAATTAAAGCAAATAAACTAGGAATAGATAAAAATGGCAAATATTATAGAGTTAGAAGTAAAAATTTATCAACCGAAGATAAAGAAAAATTCTATAAGCTTTTAAAGTCAAATCCAGATTGAGAAAATTTTAGCAATAGCACTTTAGATAAAACGTTAGTAGATTATTTTAGAAAATATTCTAATGATTTTATCACATTTTTCAATATAGTAATAAAAATAACCTTTACAATCAAGCACTAAAAAAACATGATTTTAAAGTTTTAACCTATGAAGATGTCATAGAAAATTTAACCTCAAAGCAAAAAGATAAAATAATAGGTGATATTCATT # Right flank : CTAATCACAAATTTTAATAACTTTGACTACATTTATTTAATGGATTTAATAGTAAATGATTTAGAAAATTGAAAATTTAATTTGAATTTAAAAATTCTTTTATCTGTTTTGAAGGGACAAAAAATGAAATACCTTGAACCGGTTTTTCATTTATAAGCCGAAACGTCATTATCCCGATTACTTTATTTTTAGTATTTAAAACAGGACCACCACTATTTCCTGGCTCAATTGTGATGCTAGTTCGAACAAAATCTTGATTTGCTAATTTATTAGTTCCTGAAACTATTCCTTTGCTGATTGTCAAGCCAAGATTATGTGGATTTCCAATTGTAAAAATTTCATCGCCATAACCAAAATTTTCTTCTATTTCAAGATTTTTAACTTGTGTGTTTAGTTCCAAACTTAATATGTCATATTTTGGTGAAATTTTTATAATTTTAGTTTTTTTATAGTCTTTTTCATTTGCAAACCGGTAAAAAATATCAATTTCATCGCTATTT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC # Alternate repeat : TTTTGTGTTGTACAATTTCTTACTAGAGTAAAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTTTTGTGCTGTACAATTTCTTACTAGAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //