Array 1 619901-624946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQF010000001.1 Bifidobacterium apousia strain M0109 NODE_1_length_1084387_cov_259.665189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 619901 28 100.0 33 ............................ CGCAAGGCCGCATGGTACGGGACTATCGACTGC 619962 28 100.0 33 ............................ TCGGCACGCGCAACGTATCGCTCGCCACGCTAG 620023 28 100.0 33 ............................ CAATTATTATAATCCGACAAAATTCAGACCAGT 620084 28 100.0 33 ............................ CTGGTCAACAATGGCCAGCCGCAGTCACAGCTG 620145 28 100.0 33 ............................ GGAGGAAGCCAGAAAACAATACATGACACGCCA 620206 28 100.0 33 ............................ TCTTCGCATGATGATCCTCTCAAAACAATAAGG 620267 28 96.4 33 ......T..................... TGATGCTGGCCATGCTTGTCGATCCAGGTGCAT 620328 28 100.0 33 ............................ TCAGGTAGAATGTTACTTATATCATTCAATACC 620389 28 100.0 33 ............................ TTCATCTATGACTATATCCCACATTTCAGCATA 620450 28 100.0 33 ............................ CGGGCTCAACGATCTGCAGTCGGCCAATATCGA 620511 28 100.0 33 ............................ ATCAGGATAACCGTCCATCGATATCGTAGAGAC 620572 28 100.0 33 ............................ GGCGCGCCGGGCATAAACGGGCTGGCCGACCGG 620633 28 100.0 33 ............................ CAGCTGGGCGACGGCCGCTATATGCTCAACCTG 620694 28 100.0 33 ............................ TGGGTTTCCACTCTACGGGACTGACAGTTATGG 620755 28 100.0 33 ............................ CCTCCCCTGCGAGTATGTGGGTGAGACCATGGC 620816 28 100.0 33 ............................ CATGTTTTCAAGAGACTGCCGCACGTTACCCTT 620877 28 100.0 33 ............................ ATTCGACAGGAGGATCCGGCAATGTCGATCTCT 620938 28 100.0 33 ............................ GGCGATGAGAGGGGGAAGCTGGTGTCCTGCTGC 620999 28 100.0 33 ............................ TGATCTAGATCAGCTTAATACCATGACCGCTGT 621060 28 100.0 33 ............................ CCCCATGCTCTCTAATATCGGCCCCATGTTGAA 621121 28 100.0 33 ............................ CATTTCCACGAAGACCTGGACGCGGGGAAGGCT 621182 28 100.0 33 ............................ TTCAGAATAAACGGAAACACACTTGAATGGCGA 621243 28 100.0 33 ............................ TCCGTTGTCCTCTGGCTCTGGCTCCTTTTCTTC 621304 28 100.0 33 ............................ CCCCTCGTGACGAGGAAACCAGCGAAATGGGGC 621365 28 100.0 33 ............................ TCACCCGTTGGCAAACTGTTTTCGTCGGCCACT 621426 28 100.0 33 ............................ TCACCAGCCGTCACAAGAGCCGCCGGCGCTCGC 621487 28 100.0 33 ............................ CATCGCCGGGAGCACCAGCTCGTGATTGACAGC 621548 28 100.0 33 ............................ CTACGTGAGCTTCTTTAGCGGTGTACAACATAC 621609 28 100.0 33 ............................ CTCCTGGAGTGAGATCACGGGCGTTTTCCAAAG 621670 28 100.0 33 ............................ GAAGGTGAACGAGCGGACTGGCAGGAGCACGAA 621731 28 100.0 33 ............................ TCAGAGGATCATCGATATCAGTGGACAGGATAT 621792 28 100.0 33 ............................ CAGCCGGTCGATCCGCATACATGCGATCACGCT 621853 28 100.0 33 ............................ TCAACTACGATCACCGATGATCGATATCATGGT 621914 28 100.0 33 ............................ TTCGACAATGGTGAAATTCGGATTGCCTATCGA 621975 28 96.4 33 ....................A....... CGCCAACGCCAGCGCCGCAAGGCGCAAGTCAGG 622036 28 100.0 33 ............................ CCGCGACGGGAGCCCGCGCATCTGGAAGACCGA 622097 28 100.0 33 ............................ CCCTAGTCCGAGTGCAGACGGCACGGGAAAACA 622158 28 100.0 33 ............................ TCATGTCTTGAACCGTATCTTGATCCTAAAAAT 622219 28 100.0 33 ............................ GTGGCTGCACGACGGCGGCTGGAAGAACAGGCC 622280 28 100.0 33 ............................ CCACGAAAGGGAGCAGGCATGAGCAGGCAGAAA 622341 28 100.0 33 ............................ TTTATCTCGTAAGTCATAATAATCCTCTCTATC 622402 28 100.0 33 ............................ AAATTACCGTCAAAGTAGACCAGGCGACCCAGG 622463 28 100.0 33 ............................ TCAGCTGGCACGCCGCCATCCAGGCTCCCGTCC 622524 28 100.0 33 ............................ TCGACCTCAGCAAAGAACTCTACGGATGGGCAA 622585 28 100.0 33 ............................ TTTGCGCGCTACTGCCGGGCCATATATGACCTG 622646 28 100.0 33 ............................ CGCCACCATCCGGATAGCCCAGGTTGACACCGG 622707 28 100.0 33 ............................ GGCTGCTCTTCTATGTAAGAAACAAGCAATCCG 622768 28 100.0 33 ............................ GGACCATTGGGGCACGAGCCCGCCCACGTTGGA 622829 28 100.0 33 ............................ CCAAACCCTTGGACGCTCTACACCCTGGCTGAC 622890 28 100.0 33 ............................ GTACCCCAGGTACTGCCTGGTATCAGGGTCATA 622951 28 100.0 33 ............................ TTCGGCAGTAGATAAAATACAACGGGCGCAAAA 623012 28 96.4 33 ...........................T CACCGGATACCTGTTTCTCGCCAAAATACCAGT 623073 28 100.0 33 ............................ TTGGCGAATTCGTATCAAAAACTCTCAAAAGCA 623134 28 100.0 33 ............................ CCGTGTGCATGTGAAAGTGCAGCAGGGCACGCC 623195 28 100.0 33 ............................ TGTCCGGCTGTGACAGGAGGAACATGTATGTCC 623256 28 100.0 33 ............................ CCACCCCGGTTTCATCCCCGCCTCCGACAACGA 623317 28 96.4 33 .........................C.. TGCGATCAGCCGCTTTTGCGGACCCTTCCCAAA 623378 28 100.0 33 ............................ CATCGCCGGCCACGGGGACGCTGCGAAAGGCTG 623439 28 100.0 33 ............................ CAGCTGGACCGAATGGAAGTCGCCCACCAGGGT 623500 28 100.0 33 ............................ TGCCGCCAGCTCACCGGGCCACCCCAGCGTCCA 623561 28 100.0 33 ............................ CGCGTCGATCGGGTTCAGAATGCCTCGAGTCGT 623622 28 100.0 33 ............................ CCGGCCTTGTGCAGTCCAACAACATAACACCAG 623683 28 100.0 33 ............................ CAAGTTGTGTTGAAACAGCGGAAAAACACGATC 623744 28 100.0 33 ............................ GTACGTGCCGCTCGGCTATATCCCGGTGGCGGT 623805 28 100.0 33 ............................ TCGTCGCCCGCCATCGAGCCCGCCCAGGTCAGG 623866 28 100.0 49 ............................ CCGATCGCTTGGATTGGCTGTCGCGTCTGGCGATTATGCCAATACGATA 623943 28 100.0 33 ............................ TGATTCAAAAATTGACAAGGCGAACGCAGAACA 624004 28 100.0 33 ............................ CTCGAACTTGGGATCGTCCTTGCGATAGATGGA 624065 28 100.0 33 ............................ TATTATGGCTGATGTAAAGCGCACACGCTTTTA 624126 28 100.0 33 ............................ CACCCAGCGCGCAGGCCTGACACCCATCGAGGA 624187 28 100.0 33 ............................ CGGATCCCTCATCCCGTTGTTGGTGATGGTCAC 624248 28 100.0 33 ............................ TCAAGGACAGGATCAATTTCATAAAAATTACGA 624309 28 100.0 33 ............................ TGTGAAACATTCTCGGGCGTGTCGCATTGCTAT 624370 28 96.4 33 ...........................T TCTTCTTCCCGCAGCCATGCACGCGGGGTATCA 624431 28 96.4 33 .....................T...... TTCACTGCAGAACGATCTGACGCATGACAACAA 624492 28 100.0 33 ............................ TGCAGGAGGAGGCAGCAAATGGCTAAGAGCGCA 624553 28 100.0 33 ............................ CTGGTGTACGGCATCAAGGCCGTCTATGTCATG 624614 28 100.0 33 ............................ TGCTCGTTTGGCGTGTAGGCCCACCATCTGAGT 624675 28 92.9 33 ..........T...C............. TCACCCATGTCACATTGCATGTCATGGGCGGAT 624736 28 89.3 33 ..........T...C.....A....... CGGGTCAAACGAGATGGGACTCAACATGTCCGC 624797 28 100.0 33 ............................ GCACCGGACGAAGGGTTCTCTGCATTCCACCGC 624858 28 92.9 33 ........T.....C............. TGACGGAGAAGTTGTTGCTCGACCACATCGAGC 624919 28 82.1 0 ...T....T.....CT...........T | ========== ====== ====== ====== ============================ ================================================= ================== 83 28 99.2 33 GTGCTCCCCGCATCTGCGGGGATGATCC # Left flank : GCCATGTCACCGCTAGGGTTCGGGACCGGCTTTGGGAACGCATCACAGGGCAAATCCGAACCGGCAAGGCCATTATGGTTTATTCCGCCCGCAATGAGCAGCATCTGGCATTCAAGGTGCATCGCTCGGATTGGAACCCAGTTGACTGTGAAGGATTGGCTTTTATGGAGAAGCCTGCTGATGGTGGCGATGGCAGATCTGCAGGTGGTGGAAACCGATACCGTCGGACTGGTTAAAGCAATGCCAGCAAGTACAGACGTGCGGCAAGGTTCCGTCGCTCGCGTTCCAGCTGAGCGCAACTGGACCTGTGTACTTTTCAGATGAGCTTTACCGATGAGTGCTGAGCACTGATTACTGGGTGAGTGCATGGCTAAGGAGCTCAGTGTAGATGGTCTGAATTGCAGCGGCTGAGACGGAAATAGAGAGGGTTTGAAATGCAAACTCATTAAAAATTAGAGATCTTGTCTATTATATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : TTAAAGGACATCTAATGGATGCTCTCCGGTTCACCAATATGAGAGGAGACGATCAGAAAATACTTGAGGATTTCATGAGAGAAAGGGCATCCAGGAATTGTGCCTGTACCCGTCGTGACAACATTCATGAGGATCTGATCGATGGTTATCCGTCGAGGCATCCCCTCATCGAGAAATTGGTGAAACCGAACGCCTGGTCTGGGATTCGCTGGATGATGCGGACAGGAGAATGATCCAATAGGATCGCATATACTACGGTACAGGCTGCGGCGGCGGCAAAGCAGAGGTGAATTTCTACGAAGTTATCGGTATAAGGCGATTCGACTGGTTCATTCCCGGGCTCCGACATACTGTTTCAATCAGTAAAAGAATCACTATTAGGAGTGTCGGCGAAGAATCCATAACCACTTCATGGTTTGAACATGAGTATGGTTTGAAGAGGATTGTTTGATTCTCTGGAGATGATCCGGCCGTCTATGCGGCCAAGGACGAGAATGCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCTGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTCAGCGGGGATGAGCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //