Array 1 997711-997142 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEI01000001.1 Yersinia kristensenii strain FDAARGOS_415 pRIID_123.contig.0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 997710 28 100.0 32 ............................ ATGACGAATGTGACCGGCGCACTCGTTTAATT 997650 28 100.0 32 ............................ ATCTTCGCCAAGCCATTCAAGCTCTACAGATA 997590 28 100.0 32 ............................ AGACGGCAAAGCAAAATAATCAGCCAGCACTT 997530 28 100.0 32 ............................ AGTCAGCGGCAACCAACACTGGCGACCGGTCA 997470 28 100.0 32 ............................ AGTCAGCGGCAGAGGTGTCTGGATCGCAATCT 997410 28 100.0 32 ............................ GCCTACAACAGCCAGCCGGATAACATTGTTGT 997350 28 100.0 32 ............................ TGGATGGTGTCGGTCTGCCGTACCAGCAGAAG 997290 28 100.0 32 ............................ AAGTAAACGCGAACCAATGGCGGCTAAATTAT 997230 28 100.0 32 ............................ GTGAAAATAGCGATTACAACGTGCAAAAGACC 997170 28 92.9 0 ...........T........T....... | T [997147] ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGATTTAGTCGAATTGCAGTCTGCGGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGAAATTATTCCGATACCGACACGGGTTCAATATCGGGTCGTGCGCCGCGTGCAGGTAAAAAGTAATGCGCAGCGGCTACGCCGTCGTTCTGTCAGTAAAGGCTGGCTGACTGAGGAAGAGGCTCTATTACGGATCCCTGATAATCGCGAGCAGCACTGTCATTTACCTTTTTTACGCTTAAAAAGCCTATCCAGCGAGCAAAGCTTCTTGTTATTTATTGATCAAGGCGAGTTACAGCAAGCACCGGTTAGCGGAACCTTCAGTGCTTACGGTTTAAGTGCCATAGCCACTGTCCCTTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAACTCATTGATTTTATATAGAGTTGGCCGAGAAGATTAAAAAAGCCTTTTTTATGATTTTGGTGGGTTATTTTATTATAATCATTGTGTTATTCGTGTTTCGTTACT # Right flank : TCTATCCGGCGTCTTATTTCTCCTTTTTCGTTGAATACCTCTAAAGAGGTATATGTTTGATTTTATGTAAAAATTGTTTGGTGCTGATTTTTTTTGAGCTGGTTCATAAAATTAAATACCCACACAAAGAATGTTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCCACTGGGCGAAATTTGTCATGGGTATCTCTGGGTGAGTGTTTGACATCCTGGTGCGGGTTTAAAAATAAAAAAATGACTGCCTGGTGCCAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTTTTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAATGATAAGTTCGCGCAGCAGCATGTGGATCAATTCACCTCTTGGTTGAAAACCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1007013-1006203 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDEI01000001.1 Yersinia kristensenii strain FDAARGOS_415 pRIID_123.contig.0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1007012 28 100.0 32 ............................ AATTATCGACAATTGGGATGAGCTAACCACGC 1006952 28 100.0 32 ............................ TCGGCGAGCTACAATCTGTAGCTGACTTCTTC 1006892 28 100.0 32 ............................ TTTTATTCTACCCATTCAACCGTGATAAACGG 1006832 28 100.0 32 ............................ TGATTTATAAGGCAAAAAATATCATTCATGGC 1006772 28 100.0 32 ............................ TCACCGCGCAAATCAACATCCACCTGACGAGC 1006712 28 100.0 32 ............................ TCCTCAGCATCACCACCAGCCGCCTATATGGC 1006652 28 100.0 32 ............................ GCACCGTTTACAGCTGCCTTTCTTCAACTCAT 1006592 28 100.0 32 ............................ TAACGGTGTGCATCGTGCCAGAGAGAAACAAA 1006532 28 100.0 32 ............................ ACCTTGTCGGTAACTTGCATCAGAGGCTGCTA 1006472 28 100.0 32 ............................ TGTCGTCCTGACTGGCGCGGCGAGTAATCCTG 1006412 28 100.0 32 ............................ GAATATTAAAACGAGCAAACTTTAGGATAAAG 1006352 28 100.0 32 ............................ AGAAATGATGCTCAGTGATTTACAACGCTGGT 1006292 28 96.4 32 ...T........................ AGTTAAGACGAACTGCAATAGCGACGAGGAAG 1006232 28 85.7 0 ...........T.........A....TT | AC [1006206] ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCTGTTTCTCCTGCTTGTTATCCTTGCTTAACCCCTTGAAATACCTCAATTTTTAATCGGTCATATTTATTCTTTCTGATACAACAAAACGAGCAAAACCCGCCCCAAAATAGTGAACTATAACTTTTTCAAACCTCCTTTTTGTCCGTCACATCATCCGCAGTAGAAAAGGTTTAATGACATTTTGCCTTAATCCCAACTTGAACCCTTTTTTTAGCGTGTTTTTTAACGCATTGATTTTATATAGAAATCCCCAAGGCTTTTAATAAATCATTTTTTATCACCGCGCTTCAATGCACTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : GAGAGCCCAAACACATTTTGTTACTTACAGTAGGCTTATTACTGTTTTCTATTACCGACTTTGCCGGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGGCGCGCTCACTGACTGGCAAGATACAATTAACCCGTTAGAACGATTTGGGTGTTCTGTCTAAGGAGGTTGCTGGCGATGGACAATTCTATTCATTCCTCTGATCTAAAAACAATTCTGCACTCAAAGCGTTCAAATATTTATTATTTAGAATATTGTCGTGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAGGGGAAACAATCTCTTTATTGGAATATCCCCATCGCGAATACCACTGTCATCATGTTGGGGACGGGGACATCTGTGACTCAAGCCGCTATGCGTGAGTTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGTGGTGGCGCACCACTTTTTGCGGCGAATGAAGTTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //