Array 1 14455-14022 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWSD01000005.1 Dorea longicatena strain BIOML-A5 scaffold5_size169333, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 14454 37 97.3 29 G.................................... GACAGCTTTGTAAAGCCATATACGTCTCT 14388 37 97.3 29 G.................................... CTATCATCGGGGCAATGAAAGCTATCCTC 14322 37 100.0 29 ..................................... TATAGGTGTCGAACTCTTTCCACCAGTAC 14256 37 100.0 29 ..................................... GATTTCTGTCAGAAGCTTATATCAAGTCT 14190 37 100.0 29 ..................................... CCTCGTCTGTCTTGCCACACAATCCATCG 14124 37 100.0 29 ..................................... CCACACCCTCGGTCACATGAAAGAGATAT 14058 37 94.6 0 T...............................C.... | ========== ====== ====== ====== ===================================== ============================= ================== 7 37 98.5 29 AGTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Left flank : AAAAAAGGATTCTATCTCAGCTTTATAAAAATCTTTCAGAAAAAATATCGGAAGATCATTTTGAAGAATTTGCGACTGTGAATCAGAAGGTTATCCAGTTTATGGATAAGGTTACGAGTTCTTCCGAATATAATCTGACATATGATGTTGATTTTCAGGCAGCAGGTCTGATAAAATATTGTAATGTACATATGGATTCCTGTTATGATAGTCTGACTGAAAAGTTTATAAACTATCTGAGAACCATAAAGCAGATCTGTAATGTTGATATTGTTTTTGTGTTGAATCTGAAGCAATATTTCAGTACCGAGGATCTGAGAGAAATCTATAAACACTGTTTTTATACGAAGATGTATCTTATTAATTTGGAAGGAGTAAAATCAGACCCCATCGAAAGTGACAGATATGTTATTATAGATAAAGATCTTTGTGTGCTGGACCTTGTGTATTAACAATCTTCTATCGTAAGAAGATAACGACTCGGCGAGAACCGGATTTGA # Right flank : CACCAAAGAGTTCAGTAAAATCAAGCGTTCTCAGTTCTGCAAACGATAATTTAACAGAATATCGAAAAAGAGCAACAAACCCCGAAAATCCAGTATTTCCGGGGCTTTTCTTTGCGTATCATTTGATTTTATTCCTGCAATAATTGCTTTTCAAAGGTGGATAATAATTTGTTGATCGTAAAGAAATAACTCTTGCATTCGCTGCATGTTTTTGCATCGACTTCGATATCACCAAGAATAATGAGTTTGGCAGCCTGGAGTGCTGCAATAATGGTACGAAATTCGTCGGGTGTAATATCTGTGGCGTGATTAATCAATTTTTTCGCCGCAGAACAACAGAGTTGATAATTAATTTCTGCCTGGGCTTCTGATTCTGCAAGTCCAAGACGAGGCAGAACGGTAAGAGCGTAAGCGGTTGCTTCTATGTCAGAATGATTGAAGGCATAGGAAATATGGCTCATAGTAAAACCTCCTTAAGTTTTTAAGAAAATTATAACATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Alternate repeat : GGTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 34037-35388 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWSD01000013.1 Dorea longicatena strain BIOML-A5 scaffold13_size69061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 34037 32 100.0 33 ................................ TAAATTCCCACTGCCCTGTAGTCCAGAAGTCTT 34102 32 100.0 36 ................................ GGGTGTTAACTTGCTTGATATTACAGAATATATCAA 34170 32 100.0 34 ................................ GTACAAGATATAAAATGACGGTCAATGACGCTTG 34236 32 100.0 34 ................................ ACCTGCTTCATTCAGTTTTGAATATAACTGAACA 34302 32 100.0 33 ................................ ACTAAGTACGACAATTATATTACGGACTGTCTT 34367 32 100.0 35 ................................ GATATATCAGTAGGTTTTACATTAATAATGGAATC 34434 32 100.0 33 ................................ TTCCGTACCCATTCCTAATGCGGACATTGCATC 34499 32 100.0 35 ................................ TTCTCCAGAGTCATGGCCACATCCCCGTTCTCCAC 34566 32 100.0 33 ................................ GATAAGAGATTATCGGCAGAAGCCGTGGCGAAG 34631 32 100.0 36 ................................ ATGAATATGTGCAGATCTTCACCCAGCTACCGTAAT 34699 32 96.9 35 ..........A..................... TTGTGACTGTAAGATTTTGGGATATGGTCGAAAAT 34766 32 100.0 33 ................................ GCAATAGTTCCATCATCAACCGCTTTTGTCAGC 34831 32 100.0 33 ................................ ATTACTGCAATTATTTTCATGATACTTTTGCCT 34896 32 96.9 34 ..........A..................... ATGATGCCCCTGCATCCGGTGGAAACCATTGCTG 34962 32 96.9 33 ..........A..................... AACAAGGAAAATCCGCAAAGGAAATCGTACCAT 35027 32 96.9 33 ..........A..................... TCTGATAAAAACTTGATCATATGTGTCCTTTCC 35092 32 96.9 35 ..........A..................... GACATCTCTATAACCTCACTTCCTAATGTTCTTCT 35159 32 96.9 34 ..........A..................... ATGTATCTTGTTGTCAGGTTCTTCCAACCAATCC 35225 32 96.9 34 ..........A..................... GCTATTCGCATCAACTACATGAATGCAAATAATG 35291 32 100.0 34 ................................ ATGTATCTTGTTGTCAGGTTCTTCCAACCAATCC 35357 32 96.9 0 ..........A..................... | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 98.8 34 GTCATCCTCCTTGTGAGGATGTGAGTTGAAAA # Left flank : AGACGAATATCCACCGTTCTTCTGGAAGTAGGTGATGGAATGCTGGTTTTGATTACATATGATGTAAATACCCAGACATCTGCTGGGAAAAGGCGATTAAGAAAAGTAGCAAAAGAATGTACAAACTATGGAACTCGTGTGCAAAATTCTGTATTTGAATGTCAAATGGATGCAACAAAATGCAGGCAGGTAAAACATATCTTAGAGGATATTATAGATAAAGACGTTGATAGTTTGCGGTTTTATTATCTAGGTGATAAGTATAAAAATAAGGTAGAACATATTGGCGCAAAACCTGGATTTGATGTTACGGATACTTTGATATTTTAGTGCGAATAATAAGCGCACAGAAATCTTCTGGGAGATTCGCACCGGAAAATGGTGTGCTTTTCCAGAAGAAAAGTAAATAGGAATTAGAAAAAATATAAATTTTTAACGTATTATATTCAAAGGGTATAATACGTGCAGTTTTAGACAGAGTGTTTTTGTTTAAAATTGCT # Right flank : AGAGAATGATGTAAAAATGTATGGTACTCAAGTATAGCCCTTTTTATGAGAAAAATAGTTCCAAGTAACGATATGAATTCAATTTATGTTATGCGAAAAAGGGGAGAATTGAAAGAATATAAGTTACAGTTTCTTAGCATTAAAAAAGGACTGCATTATTAGGGAGGAGTGCAGCCCTGAGGAAAAAGTTATGAAAAAGATTTAAAGTGTTTGTTCTTTTGAACAATTCCTAGTATAGAAGCGAATTGTGATAAAATTGTGATGGAATTAGAAAGAAATTGTTAACAAATTAAAAACATAAAATAGAATACGATTGGATGCATCATAAACGGTGCCAATGTTGAAATCCAAAAGTCCGGGTGTTAGAATTACAACAGATACTATACATAGAAGATATATATAAATATCAAAGAACACAAGAAACCACACAGAACATACGAACAAACACCAAGGAGGAATACACCATGCGGATCCTAATCTACGGCGCCGGAGTCATCGGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCCTTGTGAGGATGTGAGTTGAAAA # Alternate repeat : GTCATCCTCCATGTGAGGATGTGAGTTGAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //