Array 1 651335-651763 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILD01000001.1 Anabaena sp. UHCC 0253 XSP2A_scaffold00001_cov, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 651335 37 100.0 45 ..................................... TTGATTGCTTCTCGTACCTTTGGTCAAAGGTTTGATTAGCTTTAT 651417 37 100.0 41 ..................................... ATCTTCATTTGGGCGATACTTTCTAGCAGCTAAATATCTTT 651495 37 100.0 37 ..................................... ATGGTGTATTATTTCGATTAAGCGGAAGCCTGCTAAT 651569 37 100.0 41 ..................................... TCAAAGCTTCTGCTAATTTAGTAGCTTTTAGTTTAGTTAAA 651647 37 100.0 43 ..................................... CTTGGAAGCCAGGGATAGATTTACCAACACCGATTACCCACTG 651727 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 6 37 100.0 42 GTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : TGGATGATAAGGAGTTGAATTACCAGTTGGAAAAAAGATGGTTGAAGGTTCTTAAGTTGAATGAGGATAATTTGCGGGTATATCCTCTTGATGAAACTGCTAAACAGAATACACGAGTTTATGGCAGTGATCCTCCTTATCAACCACCTGATTATTTAATTTTGTGAAGTTGAATGTTGGATGTGAAGGGGGTTAAGGTTGCTTAAAATACCCGCATGGTAAGGTTTTGGGCGATTGTAACGAGATGTAAGGAATTGTCTCTAGTTGGTCGCATGAAGCTACAGAGATTAATTGTTAGTAATGTTTTGTAATGTTGAGTAAATGTTGGTTTTTAGGCTTGACATCTTGGGGTTTTCGTTTTATTATGTCTGTATTGGCTGATTTCGGCTTTCTGAACCTAGAAAAAAGAATACTAATATTTTAAGTTACACGGCTGTTTCTGTATCCGTGTGCGATCGCTTCTTGAAATCCGTATGTCGTCAAGTTTCCAATGGTATAGG # Right flank : CGCCAGCTTGGGAAGTGTGTATTCACCGGGGGCAACTTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNCCACAGTACCAGGTGTAATAGTTCCACCTGCTAAAGTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAACTTTAAGTGCCGCCAGCTCTTCTGCTTGTTCTTGAAGCTGCTGCTGCAAGTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAACTGAGTTTGTTGAACAACTTGAACCTTACTTCAACGTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAACGTCTTAGCGAGTTTATTGATACCAGCTCCATACATGGTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAACTCTCTCACGTCCAACCCTGTTTTTACGTTAGAGTTGAAAACAAGTTTTTCATTACCTTTTCCCCGCAAGGGGATGGAAACCTGTTACTATTTCAATAGTAAAATGGGTGTCCTCTCGTGTCACATATAGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 651866-652211 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILD01000001.1 Anabaena sp. UHCC 0253 XSP2A_scaffold00001_cov, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 651866 37 100.0 48 ..................................... TTTAAGTGCCGCCAGCTCTTCTGCTTGTTCTTGAAGCTGCTGCTGCAA 651951 37 100.0 34 ..................................... TGAGTTTGTTGAACAACTTGAACCTTACTTCAAC 652022 37 100.0 36 ..................................... GTCTTAGCGAGTTTATTGATACCAGCTCCATACATG 652095 37 100.0 43 ..................................... TCTCTCACGTCCAACCCTGTTTTTACGTTAGAGTTGAAAACAA 652175 37 97.3 0 ..............................T...... | ========== ====== ====== ====== ===================================== ================================================ ================== 5 37 99.5 40 GTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : GGAAACTTGATTGCTTCTCGTACCTTTGGTCAAAGGTTTGATTAGCTTTATGTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAACATCTTCATTTGGGCGATACTTTCTAGCAGCTAAATATCTTTGTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAACATGGTGTATTATTTCGATTAAGCGGAAGCCTGCTAATGTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAACTCAAAGCTTCTGCTAATTTAGTAGCTTTTAGTTTAGTTAAAGTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAACCTTGGAAGCCAGGGATAGATTTACCAACACCGATTACCCACTGGTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAACGCCAGCTTGGGAAGTGTGTATTCACCGGGGGCAACTTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNCCACAGTACCAGGTGTAATAGTTCCACCTGCTAAA # Right flank : CCTGTTACTATTTCAATAGTAAAATGGGTGTCCTCTCGTGTCACATATAGCGGTTATTGATCGGATGAAATACAATAGAGGGCGGGGAAACCCCACCCCTACAGGTTTTGCGATTTAATTGACTGTATCTCACAAAGAGTGCATACCGCTTTGTGATTGACAAACCGCAGATAGTAGCAAGATAGATTTGAGTAGAATATTGTGTAGTATCAAGCCTGGGGACAAAAACCAAAATCAAAACATTGCCCAAACTACATATAATTAATGTATTATCTCAAAAAGAGATAGGCGATCGCACTAAATAACAGAAATTGCTAATTAGAGAAAATGTCAGAATCAGGTGGTTATCGAGTTTCGACTCCGCTCAACTACCGCGTAGTCGAGATAATATCCAGAATTTAAGGAGGTAGAGACGTTCCATGGAAAGTCTCTACAAAGGTCTTGAACGTATGCAAAATTATTTTCATCCCTAAAATCAGCAATGCCATTATCAGTCAAAC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 413666-414646 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILD01000002.1 Anabaena sp. UHCC 0253 XSP2A_scaffold00002_cov, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 413666 37 100.0 34 ..................................... AGTAATTTGTGGGATGAGGAACTTACTTAATTTT 413737 37 100.0 36 ..................................... TTACCATGACTAACGTTAACTTAGAAGCAATCCGTT 413810 37 100.0 36 ..................................... GTTTGCCTCTTCGATTCTGCTGTCTAATTCTTTCAA 413883 37 100.0 38 ..................................... AACACCAATCCTATCACCTGATTTCCTATAGCTGGAAT 413958 37 100.0 33 ..................................... ATGAAGTAAATAGTGTGAGGACTTACTAAAATG 414028 37 100.0 35 ..................................... ACTCCATGACCTTACAAGCCACTCAAGACCATAAA 414100 37 100.0 34 ..................................... GAATTACTTTGTAAGTGATCATCAAATCGGGGTT 414171 37 100.0 36 ..................................... TAGGTCAGTTTTACCAACAATCAGGCGAATTTGAAA 414244 37 100.0 38 ..................................... TAGCAAATGCTTGACTACGCACGGATAAGGACCCAGAA 414319 37 100.0 39 ..................................... ACAGATTTCTCTCGACCAATTACTTGAAATTGCGTTAAG 414395 37 100.0 36 ..................................... TAACAGTGAAATAGTCATCACTAATTGGGCGCACAT 414468 37 94.6 34 ..........T..T....................... GCTTGAAAATGTAGCATCTACTAAACAGAGAAAA 414539 37 94.6 34 ..........T..T....................... GATCAAGCTGTGCGTCGGTAGCGTTCCAGTTAAA 414610 37 91.9 0 ..........T..T................C...... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 98.6 36 ATTGCAATTTCCACTAATCCCTATTAGGGATTGAAAC # Left flank : TGACTGACGAAGGGCAAATGTTACCTATTGATGAGATTTTTGCCCAAGGATTAGATTTGTTACAGGTGGAAAGTTTACCGCTGTCATAAATCTTGGTGTTGATAATACGTGATAATATACGTTAATCTGTGGTTCTAAGCATTTAGTTGTATTATGGTTTAAATATTCCTCAACTATTTATATTCATGATTTTCTAAAATCGCTATGACGGATCACCTTTTTATTTTGGAACAGGGGTGAATAACTACGAAATCAGGCTCTTTTTTTGGTTTTGTGCGCGAGGAGGTGGGTGTAAAAAATCTATTTTCTCTCAATTTGGCTGAAATTATATCTACATAAGGCTTTGACTGATTTTTTCTATCTACACTCTCGCGCACCTTACACAGTAAGAGTTTCGGCTATTTTTCTTCTTGACACTTTTTCTGGAATGGACTATTATGATATCAGTCGCGCAACCGAACCTTGAAAACTATATATACTCAGGCTTTCAGCGCCCCGCT # Right flank : CCCACAGCAGAAACTCATTTACCAACTATTGAAATTTAATAACAATCTAAACTCAAAATAAATCCAGGTAATATCTCTTCACCTAATAACTCAGTCGGTAAATTTCGTACTTCTACATTTTTTTCTAAACGATAAATTTCTACTTGTTGCTGTTGAGGATTGATCAACCATCCTAATTTTACCCCTGCATCCATATATTCTTGCATTTTAGAACGCAGACTTTCTAAATCATCCGTTGCTGACCTCAATTCAATCACAAAATCCGGTGCAATGGGGGGAAATTTGCGCCTTTGTTCTGGGGTTAATGCTTCCCAACGTTCTGTTTTAATCCAAGCAGCATCAGGAGAGCGATCGCCTCCATTTGGTAATTTAAATATAGTCGAAGAACTAAAAGTATAACCCAGTTTTGTTTGACGATTCCAAATACCTAAATCAGTAATTAAATCAGCTTCTCTATTACCGCTTTCTCCTCCCACTGGTGGCATAATAATTAACTCTCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCCACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 687462-687933 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILD01000003.1 Anabaena sp. UHCC 0253 XSP2A_scaffold00003_cov, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 687462 37 100.0 33 ..................................... CGTTTAAGTCCTGTTCATTTGCGGAAATTTTAG 687532 37 100.0 36 ..................................... AAAAAATCTACTAGAAAGAAAAAATAATGACTACTA 687605 37 100.0 37 ..................................... CTCTGTTATGGCCACTCAAAACAGCTAAATAACTTAA 687679 37 100.0 36 ..................................... CCCTTTAGTAAAAGACTAGCATACATCTCATATTTA 687752 37 100.0 36 ..................................... GTTACTGGGTTTATTGATGTATTTTGGCTTACTTTT 687825 37 100.0 35 ..................................... CCGATACAGAAACATTATTTACCCTGTAACCAATA 687897 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 100.0 36 GTGACAATTACCAACAAAGGTGATTGAGGATTGAAAC # Left flank : GTGTGTCTGAACGTGATTTAGAATTGTTTTGGCAAGCTTTAATGAAGGCTTGGGAATTTGACCGTTCTTCTGCACGGGGTTTTATGGCTTGTCGTGGTTTGTATGTTTTTAGTCATGCCAGTAAATATGGTAATGCTCCTGTGCATGAGTTGTTTGATAAACTAAAAATAGAATCTACTGTGAATGTACCCCGCAGTTTTGCTGATTATCAAGTGGTGTTTGATGATGAATTGAAACTACCTGATGGTGTAACTTTGACAAGGTTGGCTTAAAAATGCGCGAGGGGGTGGGTGTTAAATCGAAGTGACTATGACTAAGCTGGAAACTCTTGCACTATCTGGATTTCAGGTTATGGGCGATCGTATACCCTCGCGCACCTTGCACTGTAAGGGTTTCAGCGTTTTTTGCTCTTGTGCTGTCGGCTGGAATGGGGTATTATGGGGTGGCTCGCGCAAATCTGTCTGGAAATCCTTTATTTCCAAGGGTTTGAGAGGTCAGCA # Right flank : CGATAAAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNAGGTGATTGAGGATTGAAACGATAAAAAATATAAATTGCAACTGGCACTGGAGAAAGTGACAATTACCAACAAAGGTGATTGAGGATTGAAACGAAAACGCTAAGAGCAAGTGGAGGGCAATTTAGCAGTGACAATTACCAACAAAGGTGATTGAGGATTGAAACATGAAAAGAAATTCAGCTACGTTATTTCTAGAGTCGTGACAATTACCAACAAAGGTGATTGAGGATTGAAACGTTGTACTTTGTAAGAAAGGGTAGCAGGATATGTGACAATTACCAACAAAGGTGATTGAGGATTGAAACAAAAATCAAACTAATGCAATTACTAATGTAAATAATGTGACAGTTACCAACAAAGGTGATTGAGGATGAAACCCAAGACCCCCGATAATTCTTATATCCGCACAGCCAAACGCGGAAAACATAAAATATTTATTGGTATGGCTCCTGGTGTGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACCAACAAAGGTGATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 688028-688349 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILD01000003.1 Anabaena sp. UHCC 0253 XSP2A_scaffold00003_cov, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 688028 37 100.0 35 ..................................... GAAAACGCTAAGAGCAAGTGGAGGGCAATTTAGCA 688100 37 100.0 35 ..................................... ATGAAAAGAAATTCAGCTACGTTATTTCTAGAGTC 688172 37 100.0 32 ..................................... GTTGTACTTTGTAAGAAAGGGTAGCAGGATAT 688241 37 100.0 36 ..................................... AAAAATCAAACTAATGCAATTACTAATGTAAATAAT 688314 36 94.6 0 ......G.......................-...... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 98.9 35 GTGACAATTACCAACAAAGGTGATTGAGGATTGAAAC # Left flank : TTAGGTGACAATTACCAACAAAGGTGATTGAGGATTGAAACAAAAAATCTACTAGAAAGAAAAAATAATGACTACTAGTGACAATTACCAACAAAGGTGATTGAGGATTGAAACCTCTGTTATGGCCACTCAAAACAGCTAAATAACTTAAGTGACAATTACCAACAAAGGTGATTGAGGATTGAAACCCCTTTAGTAAAAGACTAGCATACATCTCATATTTAGTGACAATTACCAACAAAGGTGATTGAGGATTGAAACGTTACTGGGTTTATTGATGTATTTTGGCTTACTTTTGTGACAATTACCAACAAAGGTGATTGAGGATTGAAACCCGATACAGAAACATTATTTACCCTGTAACCAATAGTGACAATTACCAACAAAGGTGATTGAGGATTGAAACGATAAAAAATATANNNNNNNNNNNNNNNNNNNNNNNNNAGGTGATTGAGGATTGAAACGATAAAAAATATAAATTGCAACTGGCACTGGAGAAA # Right flank : CCCAAGACCCCCGATAATTCTTATATCCGCACAGCCAAACGCGGAAAACATAAAATATTTATTGGTATGGCTCCTGGTGTGGGGAAAACTTATAAAATGTTGGAGGAAGCACATCAACTTAAACAAGAAGGTATTGATGTTGTCATTGGCTTTTTAGAAACTCATGGACGCAAAGACACGGCTATAAAAGCTATAGGATTGGAGGTAATTCCTAAAAAAACTATTCTTTACAAGAATATCAACCTCGAAGAAATGGACACCGAGGCAATTTTAAATCGTTCTCCCCAACTGGTTTTAGTTGATGAATTAGCTCATACAAATGTACCTGGTTCACATCGGGAAAAACGCTATCAGGATGTAGAATTAATGTTAGCAGCAGAGATTGATGTTTACTCTACTGTTAATATTCAACATTTGGAAAGTTTGAATGATGTAGTCGCAGCAATTACGGGTATTGTGGTGCGGGAATGTATTCCCGATATTCTCTTAGATGAAGCTGA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTACCAACAAAGGTGATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 415221-415693 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILD01000005.1 Anabaena sp. UHCC 0253 XSP2A_scaffold00005_cov, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 415221 37 100.0 34 ..................................... CGGATTCTCTCTAGGTAAGCTCTTGGTGCAACTC 415292 37 100.0 38 ..................................... TCCTAATTTAACATTTACTCATACAGCAACGGGTGGAA 415367 37 100.0 36 ..................................... AGGCGATCGCAAGCTAAGGGGGAAAATAAAAATAAC 415440 37 100.0 38 ..................................... ATACCCCAACAGCAAGCGACAATCTCAGACTTAGACAA 415515 37 100.0 33 ..................................... TCTAGCTTGTCAAATATCATCCTGTAGCCTTAG 415585 37 100.0 35 ..................................... AAGTGATGCCATTTAAAAACACAGGAAAAATCTTA 415657 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 36 ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Left flank : TATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAGCGCCGTACTAAAATCCATAGTATTCTCAAGTCTTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTAACTGATACTCAGTATGCTAAACTGCGATCGCGCCTCAATAAGTTAATTAAGCCGGAAACTGATAGCATCCGTTTTTATTTTCTCTGTGCTTGCTGTTTTGGGAAAGTAGAAAGAATTGGTGGTGAACAACCCCTTGATACGACGATTTTCTTTGCTTAATGCGCGAGGGGGTGGGTGTAAAAAATCCAGTTTCTCAAAAAATGCCTGAAGTTATACCTACATAAGGCTTTGATGGTTTTTTTGGCTTTACCCTGCCGCGCACCTTACACAGCAAAGGTTTCAGCTATTTTCCCTCTTGACACAATTTCTGAAATGGACTATGATAATAAGTGTCGCGCAACCGAACCTTGAAAATCAAATACAGTCAGGCTTCCAGCGCCTCGCT # Right flank : CATCTATTGCAATAGATTTTTTTGGTGAAATTCTACCAATTGTAATTTCTATGGAAATCTTGCCCGCTAATGGTCAAGGACAGGCAAGATTGCCCATCCCACAAAATTGAATAATTTATTTTTCTAACGTCGGTATTCCTCGTCTGCGGGGTCGCCATAAGGGTCTTCACTAGCTGGGCGGACATCACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTGGGCGGACATCACCGAAAGATGCCGAATCTGCGGGGTCGCCATAGGGGTCTTCACTGGCTGGGCGGACATTGCGATCGCGATATTCGGTATCTTGCTCCGATTCATCTGTCCCTAATAGAAAATCTTTAGCTTTTCGCAAAAAGTTATTTACCATTACTGCTCTCCATCTCACGCATATTCATCTCATCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 157956-156671 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILD01000007.1 Anabaena sp. UHCC 0253 XSP2A_scaffold00007_cov, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 157955 37 100.0 37 ..................................... TAAAAACCACGTCCACTATGAAGTCCGTTAAAACTGG 157881 37 100.0 39 ..................................... GCAAGAAGTCATAATTATAAGTTGATAATAATATTTCTA 157805 37 100.0 37 ..................................... TCAACCAACATTTTCCGAGATATTTGACAATAACACC 157731 37 100.0 34 ..................................... CACTACCACGTTCATCACTAATTTTAGTAGGCAT 157660 37 100.0 35 ..................................... ATCGGTAATTAACTCATCAATGACATCACTGTAAC 157588 37 100.0 37 ..................................... AAACTTGCTATCGAACATATTACCAATTCTTAGTTGC 157514 37 100.0 34 ..................................... GTTTAAGGATTTTGTACCTTTGATTAATTCTGTA 157443 37 100.0 36 ..................................... ACGCTTCTACCATCAGAAATTCTTGCTGATTGTGCA 157370 37 100.0 38 ..................................... AAAAACTGTTAGAAATGTGCTACTCGGAAGGGATGCAA 157295 37 100.0 39 ..................................... GTAGCAATGCTGTGGGAGCGTTAGAGATGAAATTATCGG 157219 37 100.0 40 ..................................... ACAGTTCCAGCAGGGAAGCTACAAGTTGGTGACAGCATCA 157142 37 100.0 35 ..................................... TTTTCTGAAAGCCTCTATGCCTTCTTCTAGCGTAC 157070 37 100.0 35 ..................................... CTTTAGAGGAATTACAAAATTATCATGATAATCAC 156998 37 100.0 34 ..................................... TACGCCCGGTGAAGAGAGGCTTGACAAAATATTA 156927 37 100.0 34 ..................................... AAAAATAATTTACTTTTCATAAATAAAAAAAGGG 156856 37 100.0 41 ..................................... CTATTGTTTTTTCTGCCATGATGAATTATTAATTAGTAGCG 156778 37 100.0 34 ..................................... GATGAAGCTACTGCTTGGCTACCTTGGGATTTAA 156707 37 91.9 0 .............A..A...............A.... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 99.6 36 ATTGCAATTTCTACTACTCCCTATTAGGGATTGAAAC # Left flank : TGTAGAATGTTGTCTCCTGTTGTTGAGGAAGTGGCGGCAGAATACGAGGGACAGGTAAAGGTGGTGAAACTCAATACTGATCAGAATCCTACTGTTGCTAGTCATTATGGGATTCGCAGTATTCCTACTTTGATGGTTTTTAAGGGGGGACGACAAATTAATACCGTTGTTGGTGCTGTTCCTAAATCTACCTTATCGGCTGCTTTGGATAAGTATGTTGCTGCACAAGCATAGTTAAAGATATGGGGAATTTCTGTGGTAAATCTGTTTTTCTGCGCGAGTGGGTGGGTGTAAAAAATTCACACTCTAAAAAAATGGCTGGAATGATTTCTCTGCAAGGCTTTTATGGCTTTTTTGATGTTCAGACACCCGCGCACCTTATACAGCAAGGGTTTCGGCTATTTTGTCCCTTGACACTTTTTCTAAAATGCACTATGATAAGACCATCCGCGCAACTGAACCTTGAAAACCAAATACAGTCAGGCCTCCAGCCCCCCGCT # Right flank : GCCAAAAAATTCTTCCTTCTCAATCCTCATCTTAGAAGTACGAATTCATTGTCAATTGTCAATTGTCAATTGTCAATTGTCCATTGTCAATTGTCCATTGTCAATTGTTAATTGTTGAACTCCGTACAAAAAAGCGTTAACCTAAGCGCATAAGACTAAATACAGGAGAATCCCGTGAATTCAAGCACCCAAATCAAAGCATTAGACGTACCCAGCGCCATTTTACAACGTCGTTCCATCAAAACCTTCAAACCAGATCCCATCTCACCAGAACTACTCAAACAACTAGTAGAACTAACCGTAGCCGCACCCAGTAGTTTTAACGTCCAATGTTGGAGAATCGTATTAGTTCAAGACGAAGCCCAAAAAACTGCATTATGTGCCGCCTCTTGGAATCAAAAGCAAATTATTGAAGCACCAGTTACCTTTGTATTTGCTGCTGACGCTGCTGCGGGAGAACAAGATATAACCCCCATATTAGAACAAGGTGCAGCCACAGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTACTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 191457-192285 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILD01000010.1 Anabaena sp. UHCC 0253 XSP2A_scaffold00010_cov, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 191457 36 100.0 35 .................................... AGTCTGAGCAATAGATGGGAAAATCGAAGCAAGAA 191528 36 100.0 32 .................................... TTAGCCAGTGATCACGCTCCACATTAGCACTC 191596 36 100.0 35 .................................... TCCAAGCATCTGGGAAAATAACACCTGAAAACAAT 191667 36 100.0 35 .................................... GTTAATTGGAACATATCTGATACATTCCCTAGCAA 191738 36 100.0 34 .................................... GAGACCCTTTGGTGTAAATACATCGAGTTGATAA 191808 36 100.0 35 .................................... ATTGCAGGAGTAGAAACTCCTAAAGTTAATGCAGT 191879 36 100.0 40 .................................... TTAATCAACATGTCGATGAATCTCGTAAGATTACTTTCGA G [191907] 191956 36 100.0 36 .................................... CCTCATAAACTTCTTTAATCGAGAGGGTGCTGGCAA 192028 36 100.0 37 .................................... AATTTTTCATCTTGCAAACTAGCCCTGTATGCCATGA 192101 36 100.0 38 .................................... ACTGGCACGGCGAAGTACAGTTTATCTGCTAAAATTTC 192175 36 100.0 39 .................................... GGTGTTATTACATCGTTCATTTTGTGATCAAAAATGCGA 192250 36 91.7 0 .............................C.A...G | ========== ====== ====== ====== ==================================== ======================================== ================== 12 36 99.3 36 CTTTCTAAACCCACTTCCCCGCAAGGGGATGGAAAC # Left flank : TCGTTTCATTTTTGCTGAAGACGTATAAGCTGATAATTGATAATTGACAATTGACAATTATCAATTACGAATCATCAAATAAAATCATGTTTACCATGGACATTCAAGTAAGTAGGACTATTGCTTGTAGGGTGTGTTAGGGGATAATTCGGTAAATAAACTGATTGTCTCTAAGTGACGCACCTGGCAAGGTTTTTATGATTGTTTCTTGCTTACTGCTATAGTACAAATTCGATTCATTAAATCGAATTTATACAATAAAATTCTTGACTCTTCTAGTTGTTAAGTAGTAAACTTAGATTGGTGGGTTAAATTTTTTCGACACACCTCCCCCGAACCTTGAAAACTCTATAATTTCGTTGAAGTGTGTCGAAGTCTTGCACACTAAAGGTTTTAGCCTATAAAATTCGCCACTTTGTCGGAAAATTTTTCCATTTTTCTGAGGTGTATCGAAATGGGTATCTGAAACCCCTACCCAGTAAGCTTTCCAGAAGTGAACC # Right flank : GTTTACTTGACAAAACCTATTTTTTGAAGGTTTGAGATTAAATGATCATGGTGGAATTTGTTGGCACGACAACCTACAATTGGGGAGAAAGGTAGAAAAATCGCAAGATGTAATCAAGAGTAAAATTGCCCAAAACCTCTTAACTATTGCCTGTTTCCTCCTAACTGTCCATAAGCACAAATCTCCACACCAATCTACTGACTATTATGTTCACCATTGACATTCAACAAGAACAATACAAAACCTACATCCTGTCTGATAAAACCGCTGGTTCACAGATAGAAGTTGTTCCAGAAAGAGGCGGTATCATCACTCGTTGGCGAATTAATGGTCAAGAAATATTCTATTTAGATACAGAACGCTTTACTCATGCTGATTTGAGCGTTCGGGGTGGTAATCCAATTTTGTTTCCTCTTTGCGGTAACTTACCTGATAATACTTACAGCATCGAGGGAAAACAGTATACTATTAAACAACATGGCTTTGCGCGAGAATTGCCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTAAACCCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //