Array 1 1552-2036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSU010000022.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 773 CIRM_BIA773-i1-1_scf22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1552 36 100.0 40 .................................... ATAATATGCGTATCTCAAAGTTTTATTTTATGAAAAATGA 1628 36 100.0 43 .................................... AGTTTACCATAATCATTTCACTATTTTCCCTAATCATTTTTTA 1707 36 100.0 34 .................................... GCTAAAGGAATTACAGCCTTCAGAGGGCAGAAAT 1777 36 100.0 38 .................................... ATTGACGTTATCGATGATATTTGCGTAATGATTGAGCA 1851 36 100.0 38 .................................... TAAAGTTGTTATGGATGTATTTAATTTTTTGAATAATT 1925 36 100.0 40 .................................... GAGATATAGTTCAGTTAAAAGTTTTATAAAGCTCCACGCC 2001 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 7 36 100.0 39 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : AGTGCTCGTATCGCTTTGGAAGCTTGTATTCTCTGCCTTTTATCTTGTCCATCTCGGCTTCCATTCTGTCCAGATCAGCTTCCAGTCTAGCACGCTCGCTAGCCTGCTTCTTGGCCTTGTAGTAGATATGGAAATAGCGGTCAGTGTCGTCATCCGCGTACAGCTTGGCTTTAACCGTCATGCCATAAGTCTGGTAAGCCTTGATGGAGCAGGCTCTCTTTGATTCGAATTCGCCCATGTGCTCCATGATCAAGCCATGTACAAAGGAGGCCCTGCCTTTAACCATCATCACGAAATCATAGTCGCACGAGTCCATGAATTGGATGTTAGCCTTACTGAAGTATCCACGATCAAGAATGAAACCTATCTTCTTATAGCCGTAGCCGCGAATCTTCTCCAGCATGTATTTCAGTTGTGAGACATCCACGATACTGCCCGGGTAGCTTTCGTAAAGCTAGCAAGGAGGAACTTTAAAAATGAAGGATGTTGTTGTAGATTTT # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 33370-29866 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSU010000003.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 773 CIRM_BIA773-i1-1_scf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 33369 28 100.0 33 ............................ TGCTTGCCACCCTACCTTGTTCGCCATTCTATA 33308 28 100.0 33 ............................ TCATCGATTAGCGCTTGGTGGTAAAGATTGGCG 33247 28 100.0 33 ............................ TCAAGCTCGTGATTGAAATGAACCCCTTCATCG 33186 28 100.0 33 ............................ CAAAAGATGTTAAAATTCGCTGAAAGAGATGGA 33125 28 100.0 33 ............................ TTTCGCCTAGCTCTTTGATGCTTGCGTGTAGCT 33064 28 100.0 33 ............................ TTTTAGTTTACGCAGCTTCCCAGATGGAACGCA 33003 28 100.0 33 ............................ TAATCTTTGGCGCTTCAATAACTAGAGCTTTTG 32942 28 100.0 33 ............................ CAGACTCAGAATGCCGTTTCGTGGGGGCTGAAG 32881 28 100.0 33 ............................ CTACCGCAAGCCCATTTAAAACGCATCACGGGG 32820 28 100.0 33 ............................ TAAAGTCATTCGTTTCTTCTGGCAGTTCGCGGC 32759 28 100.0 33 ............................ CAATAGACTAGGATTCAAGCCTTGACCCCGTAA 32698 28 100.0 33 ............................ TAGCAGAAATTAGAGAATTAGCAGCTGCTAGAC 32637 28 100.0 33 ............................ TATGATTGTGCTTGCCAACCGCCAGCACTAGCT 32576 28 100.0 33 ............................ CTAACAGAAGAAACGAATGATTTTATCAATGTT 32515 28 100.0 33 ............................ TTTCTTTGCAATCATTCGGTATATCGTCAGTTG 32454 28 100.0 33 ............................ TCAGACTTAAAAAAAATAGTCAAAATTTCGGCT 32393 28 100.0 33 ............................ CGATTTTAGACCGCTTCGACCGCTTAAACGAAG 32332 28 100.0 34 ............................ TTTTGGTCATGAACGGCGGCCCCACCGTGTGGGT 32270 28 100.0 33 ............................ TTTCTGCTATTTCCTTAATGCTTGCGTGTAGCT 32209 28 100.0 33 ............................ CTGGCAAGGGGACGAACCGGACCCGGCCAGCGC 32148 28 100.0 33 ............................ CGCTTGATGAAGACAAGCGGCTGAACGCATTGA 32087 28 100.0 33 ............................ TAGGTAGAAACACGATTTTTATTTTTCTTTCCT 32026 28 100.0 33 ............................ TCCAATCGGGATTGCCGCCTACGGTTCCACCAA 31965 28 100.0 33 ............................ TGACGCCTTAGAAGTTGAGATTAAAACAGACTC 31904 28 100.0 33 ............................ TAAAAATGAATGCAAAAGAAACTTTTGAAAGAA 31843 28 100.0 33 ............................ TAGCGGCTTGCTTGCTTCCTTGCCTACTTTAGC 31782 28 100.0 33 ............................ TGCAAGCGTAAAAGCTAACTTTTTTTATTTTTT 31721 28 100.0 33 ............................ CATCTTTCCGACGGTAGCGCAAGCCCTTGGCAA 31660 28 100.0 33 ............................ TTAGGTAGGGGTATATCATGATTGACTTTATTC 31599 28 100.0 33 ............................ CGAACTAGAAGCATTCGCCCAAAATTGCGATCG 31538 28 100.0 33 ............................ TAACTCGTCAAATGACATATTAATTGCTAGATT 31477 28 100.0 33 ............................ CAGCTACCAGGCATGCACTAAGAAAGAGGCGGC 31416 28 100.0 33 ............................ TCAAAGTAAAGGGCGGCCGCCATGTAGGTGTAG 31355 28 100.0 33 ............................ TAGAGTGATTTAGTGATTTAGTTGCAAGTCTTG 31294 28 100.0 33 ............................ CTTTCGGAAGTGTACTAATATATATCTTGAAAG 31233 28 100.0 33 ............................ TTATGTCACTAGGGAAATGTCCGATTTCATTTG 31172 28 100.0 33 ............................ CCAGTGGCGGCCGTGATCACTCAAAAAGTAGAA 31111 28 100.0 33 ............................ TAAGGGACCGGCCGTCCTTGCTAACCATTACAC 31050 28 100.0 33 ............................ CAATTCTTGACCGCTTCGACCGGCAGAGCGAGG 30989 28 100.0 33 ............................ TGGTATCCAAGGACGGCCGAGAACTGATTTTAG 30928 28 100.0 33 ............................ TGGAATATGCCAAATATTCATATCCGAAAGGGG 30867 28 100.0 33 ............................ TGCTGAGCAATATGAAAACGAACATTGTCTGAT 30806 28 100.0 33 ............................ TCAACCAGGTGCGCTTGGTTACCTACCTTATGA 30745 28 100.0 34 ............................ TGTTGACTACCAGCGTTCAAAACGCAATGACCGT 30683 28 100.0 33 ............................ TTGGTCTCTACTTAATTAACCCGCTTGCTGGTG 30622 28 100.0 33 ............................ TATTTCAGCGCTCAAAGCCCTAGCCAAGGAATT 30561 28 100.0 33 ............................ TGGAATATGCCAAATATTCATATCCGAAAGGGG 30500 28 100.0 33 ............................ TCAAATGGTTCAAGAAAAACTGGAAGGAAATTG 30439 28 100.0 33 ............................ TTTTCTTCTTGGACTGTACCTTCTTTAGCTCGT 30378 28 100.0 33 ............................ CATTGTTCAGTATTGAACAAACAGAAAAAGCGA 30317 28 100.0 33 ............................ TCAGCAGGCCTACGGTGATCTCAGCGTCGATTT 30256 28 100.0 34 ............................ TTATTAAGGGTACTAAAAAAGACGGTACAGAATG 30194 28 89.3 33 T.........................TG GCCCGTCAAGTTGCCAGTTTTCTAAGAATAATG 30133 28 96.4 33 T........................... CTTACGGTAGATCAGACGATACTGACAGCCAGG 30072 28 100.0 150 ............................ TGGGGGGCGTAGTACACCCCACTGTTATAGATCTATTTTACTTAATCGGCTGTGATCTCACTGCCATTAGTGAGTAACATGGGGCGAAACAATATTCCTCACGTATGTGAGGAGAATTCTTTCTTTATGCTATTGTGTTTTTCGTACTGT 29894 28 78.6 0 ...........AT.T.C....A.....A | T [29887] ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 56 28 99.4 35 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACCGAAACTGATCAGATTTTGTCTATTGGCGCGGTGAAACATGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATCACTTCTGAAATGCTAAGTAAGGAAGGCGTTCCATTGCAAGATGCATTGGAAGAACTGACTGACTTTGTTGGAAATGTACCAATTGTTGGGTACAATTTTAGATTTGATTCTGTATTTTTGAATAGGGATTATCGGAAATGCGGGATGCAAGAATTGAAAAATGAGATCAAGGATTTACTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACGGACTGTATTATCAAACTACGGGATTGAAAATAAGGTGCCGCATAACGCTGTGTCTGATGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTCTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : TAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGAGAAGGAGTGAGGAACAAGCATGAGCATTTACGGTAAGTACGCCGATTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAGAACACGGGCAAAAGCTATATGGGCACCTGGAAGGTCGCGTCAAAGGCGAAGAAAGCATGGCGCAAAAGTGCGAGAGAAAAGGTTTGCCTCTGACGACAGAGTCTGCATTGATCGAAAACCGGGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCATGGCAACAAGCCTGGCATCT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //