Array 1 27143-27469 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGJ01000013.1 Megasphaera sp. DISK 18 contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 27143 36 100.0 36 .................................... ATAAGGACCTTGTGGCTTCCGGCGATAGGTGCGCGG 27215 36 100.0 39 .................................... TGGATGGCCGTTAGCTCGATGGACGAAGGTCCATCAGTT 27290 36 86.1 34 ...GTAT......................T...... TCCTTATGCGTCAGACAATAAATTAACCACTTAA 27360 36 88.9 38 ...GTAT............................. TTCGATTTCTCAGAATTAAACGTCTTCACGACGTTCAA 27434 36 86.1 0 ...GTAT............................T | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 92.2 37 GTCAGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : CTTTTTTAGAAAAAGGAGGTAATCCATAGGGGGACTGAGACTCTTATGAAGCTTTCGCTAAACAAGCTTAGCTAGCCATGTCATATTACCGATTTCTCCGCAAGGAGGAAAAGGACGTATTCTTAATCAATCTATTTTGATTCACTAGGATGTTGTGTTACTGGAATTCCCGAGATGGGCTGTGATGGCTTTTCTTGGGGATTTGTTCTATTTGGCTCCTTCGTTGCGGTGCAGTGGTTTGACAAGGTGCAGCGAAAAAAGTATACTTGAGATAAGTCAAGGTAATACTGACTTTGCCTGACCTTTGGAAAACCTATTTTAGGGTCAAAAACCCCGTAGGTTTGAAAATTTCCAAAATGGCTACAAATGGCGTAACGAAGCGGATAAACGACACTGCCAGATTTTTATTTTTCACCCGGGTCCCCCGAAAAGGAGAAAAAAGGCCGAGGTTTGAAAAATCGCCTGTGAGCCCAGTCAGGGAGCGGGTACTGAGGGATAGA # Right flank : CATCCGATGCCTATCCCACCTGTTAGACTACTCACTCGTCGTATTACCAAAATCCCCGGAGTTACATGGACTCTTTTTTTGAAAAAGAAGTTTGTACCATGGGGGACTGAATCTGACGCTCTGATGTTTCTACTTTTGTCGTAGGGTATTGGCGCATGCCTTGCCTGTTGGGGAGGGATATTCTTACAAGACCCCGGACCTACTTGGACTCCTTTTAGAAAGGGGAGTCATACAATAGGGGACTGAGACAGGTTTGTCAGTAAGCCAACTAATATGCCTTCTAGCGTCGTATTACCGTTTTCCTCGCAAGGGGTCTGAATGCACGATGAAAGACCTATCGTCTTTTTTGAACTGCTACCCGTCAA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 64541-63927 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGJ01000034.1 Megasphaera sp. DISK 18 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 64540 31 100.0 34 ............................... CAGGACAACGGCCGCAGCATGAGCCAGCGGCCGC 64475 31 100.0 34 ............................... ATACCTAGAGGGGTCTGAAATTTCACAGGATGCA 64410 31 100.0 34 ............................... ATGAATACTGACCTTAATATCATGTTCAGCACAA 64345 31 100.0 33 ............................... GGCCTCGTAAGAATTGACAGCGAAGGTCATGTC 64281 31 100.0 33 ............................... TCGTCACGGATTTCACCGGGCTGGAATGCTTGT 64217 31 100.0 34 ............................... CATGGCCATGACAATAGGGAAGGCAAAATCAATG 64152 31 100.0 34 ............................... AATGCCGGTCTGTTGCTCCGCCTCTGCGATTAAG 64087 31 100.0 34 ............................... GGGTCGTTGCCGAGTGCCTTGGCCAGCTCGTCGA 64022 31 100.0 34 ............................... ATACATGTGAGCGCAGACCTTTAGCGTCGTCTGA 63957 31 90.3 0 ............G...............GG. | ========== ====== ====== ====== =============================== ================================== ================== 10 31 99.0 34 GTCGCACCCAAACGGGTGCGTGGATTGAAAC # Left flank : CTGTCGGGACGGGACGGCCGGCAAGACAGATGGCTTCGCCGTAAGGCAGGAAACGCTCTTCGCCGCGGCAGGACAGGCCTGAGAATGAATTTGTATAGAGTATCTGCGTGATTTTCATAATGGTAAAGCTCCTCATGATGCTGGAATGTTTCTATTATAAGCCATTCGAGGAGAGAATGTAAGGAGGACTAAGAGAAAGTTCGGAGAGGACAGAGACATTCCTGACAGGGAGTTCTTTAGTACAGTGTGAAAAATGAGGAAAAACTGATTTTTCTTACAGAAAGAAAAATCACGTGTGCTATAATAGTCTTAACAAAGCCCGAGCAGATAAAGACGATGATAAATGCGAAGGGGAAGTGACCATGATAAATCCCCGTGAAAGGAGGAGATGAAATAGAAAAATGTAAACCTTGTCCCTAATCACTGCCGAATAAGGCTCGGCAGTGGGAACTTAGATACATCGATATAAAAGAAAGAAGCGAAAAAATAAAATTTTCGCT # Right flank : TGTGTTTGGCCGCTTTAAAATTGGGCACAAAAAAGAGGCTGTACGCCGTGATTTTGTTTCTCACGGGGTACAGCCTTTTTGCTATCACCTTATAAGAAAATATATTTTAATACGAAGATGACGGCTAGGACGTACATGAGGAGGGAAATTTTTTCCCGTTTGTTGGTCAAGACGTTGATGAAGACATACGAGATAATGCCGAAGGAGATACCTTCTGAAATGCTGTAGCAGAAAGGCATGGCAATGATCGTGATGTATGCCGGAATGGATTCGCTGAAGTCGTCAAAGTCGATACCGACGACGGCGGTCAGCATGAGGAAGCCGACGATGACCAGGGCCGGTGCCGTAGCGAAGGCCGGAATGGCCATGAAGAACGGTGATAAGAAGAGGGACAAGGCGAAGAGAATGGCCACGCAGACGGCCGTTAAACCGGTGCGGCCGCCTTCACTGACGCCGGTAGCACTTTCGACGAAGGTCGTCGTCGTGCTGGTACCGAGGAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCAAACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.00,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1484-64 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGJ01000039.1 Megasphaera sp. DISK 18 contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1483 33 97.0 34 ................................G TGCTTGATGTAATAGTTGTGGTTATAACTACACC 1416 33 97.0 33 ................................G CTTGTGTCTGGGCTTTTCGCTCTACGATGTTAC 1350 33 97.0 32 ................................G TAAACATGGTCGCTCATAGTTTTGAGAAGAGT 1285 33 100.0 34 ................................. GCCTTAAACCAACTCAAAAAGAATTTTTGAAGGC 1218 33 100.0 35 ................................. ATCAGCAGTCGATGATATAAAAGCTGAAAATGAAG 1150 33 97.0 33 ................................T TTCGTACTTTTTTCAGGATCGCCGTCGGCAAAA 1084 33 100.0 32 ................................. CTTGATGACTCTATTCCGGCTGCCAGCATACA 1019 33 100.0 33 ................................. CGGCGGTCCACAGGGATTTCCTGCAAGAGGTAA 953 33 100.0 32 ................................. TCACGCGTACGGAAGAGGCCGAGCGGTCCATC 888 33 97.0 33 ................................C CCACCTTCTGCATGGTGTCCAAACAATCCAGTA 822 33 100.0 33 ................................. CCACCCCTGTTGATATGCAAGATGAATCGCAAC 756 33 97.0 35 ................................T ACCGGCAACCCGGCGAAGCGATTACCATGGACCAA 688 33 100.0 33 ................................. TAATGTACGCGATGGTATAATAGGGCGGCATTG 622 33 97.0 32 ................................C CGCCAGCGGCTTCCGGGTCGAGTGTAAGAGTA 557 33 100.0 33 ................................. TTAACCGCAATACTACCATCCTGCCGCGTATTA 491 33 100.0 34 ................................. TTGGACATTGAACCGCTCCGCGAGGCGAACGGAG 424 33 97.0 33 ................................G TGCCGGCCGCAAGCTTAACGATGATCGGCTGGC 358 33 97.0 33 ................................G CCCGTGTAGCGTCAAGAAGAATTTGCGAGAAGA 292 33 97.0 33 ................................T CAGACGTTATCTACAATGCCACCGTATTATACC 226 33 100.0 32 ................................. TGACTGATGATGATATAATAGTTATGTAGCAA 161 33 97.0 32 ................................T CGAATAATTTGCTCATTCAGCTTTATCGGCTC 96 33 81.8 0 ..T.......C.....T......A..C.....T | ========== ====== ====== ====== ================================= =================================== ================== 22 33 97.7 33 GTCGCACCCTTCATGGGTGCGTGGATTGAAACA # Left flank : CTCAGCTCGTCCGGAAGGCAGTATTGAAATGACGAAATTCTATTGGGTACGCCATAATAATAAAACGGGCAATGCCTCGTCAGCTCGCGTCCATCATAGTATCACGGCTAACTTGAAAGAAGGCGTTACGGCTCCCCATACCTTTGAAGACTACGTCATCGATGACAGCGCCTTGAAAAATATCGAAGGCATCAACATTGAAGTCTATCAGGAAGGTGAAAAAATCCAGTAAGGGATTCTGGAGAGAAAACGGGGATTTTGACCATGGTCGGCTAATATGACGTCACATATAACCCTATGACGAAACTCGTGTATCGGAACCGGAGAAAGGCACAGATTGACAGTGCGAAGATATAGTGAACATCGTATTAGCCGCCAAAAATCTCGATTACGATAGAAAAAAATTGATTAAATCCCTAATTTAGTAAGAACAAACTGTATCAGTGGGGAAATATCCCCATCGATACGCGCAAAAGAGACTATAAAAACGTCCTTTTGCT # Right flank : TGGCAAAAAGAATGCCCTCTCTACATTGATATGCTCCCCTTTAGGTCTGTCTCTTATACACATC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24201-23329 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGJ01000040.1 Megasphaera sp. DISK 18 contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================================================================================================================================= ================== 24200 23 100.0 52 ....................... GACGTTAATCTTGAGTATTGGCGAATCAATCAGGAAACGGTCGTATTACCCA 24125 23 100.0 53 ....................... CTAGGCGTCTTGTTCGCGCATGAAAGGAGGTGATCCATCAGTCGTATTACCCA 24049 23 100.0 48 ....................... ACAGGAGGTTTATTATGACTACATTATTTAATCGCGTCGTATTACCCA 23978 23 100.0 52 ....................... TGACGGCAAAGAACGCCGACGGAAGCTTTGACGTCGGAAGTCGTATTACCCA 23903 23 100.0 51 ....................... CGTACATATCTAAGCTTGTACGCTTCTTTTTCGGCGAGGTCGTATTACCCA 23829 23 100.0 52 ....................... GCGATAAACAGAATCCTTTCCTCGATCTTTACCGCTAGAGTCGTATTACCCA 23754 23 100.0 53 ....................... AAACAACGATAGAAATAGAAACGATAGAGAGGATAGCTGCGTCGTATTACCCA 23678 23 100.0 49 ....................... GTTGGCTTAAATACGCTAGTTATCTTACTTTATTAGGTCGTATTACCCA 23606 23 91.3 48 ....A.................T GACTAATGCATCATCTTCATCAGCTACGTTTTGTAGTCGTATTACTCG 23535 23 100.0 161 ....................... CGCATAACAAGTTTAACCAGCAATACTAATAACGCCCGTCGTATTACCCAAATCCTCGGAACTAGATTTCTTTTTGGAAAAAAGGAGTTTGTGCCATAGGGGGACTGAAACCTCCGGAGAGACTATTTGCTTAATACGTACAAGAGCAGTTGTATTACCAA 23351 23 87.0 0 ...............T....C.G | ========== ====== ====== ====== ======================= ================================================================================================================================================================= ================== 11 23 98.0 62 AATCCCCGTAAGGGGACTGAAAC # Left flank : AATGATCGCTTACGGCATCGTTCAATATCGACAGCCGACGAAAGGGGCCTTAGAGATTCTGCACGATTACTTTAAAATCCGGGCAGAGCGAAACAATATCAATCACGCCAATGCCGAAGATACGATGTCGACGCAGGAAGTCAAAAATTTAGTATCGAACCTACTGCAGAGACTGGAAAATCATCTTTCGCCTAGGGGATGAATTCCCAGTGTGAAAGGGGCTTTGACCAATTGACAAGATAAGTCAAAAAAAAGTATACTAAATATAAATAAGGGTAATACGTTAGCCGAAAGAAAACCGATTTTGGGGCGAAAACCCCGGGAGGTTTGAAAATTTCAAAAACGGCTATAAATGGCGTAACTAAGGGAAAAAACGACACTGCCCAAATTTTATTTTTCACCCGGGTCCCCGAAAAAGGGGAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCAGGGAGCGGGTACTGAGGGACAGAGTCGTATTACCCA # Right flank : GATAAGTGAAAACTTGTCCTGATTTTTTTATGTTTTTTTCAAGGTCATGGAGGTGGTACTATCGATGCGGTATCTTATTTGCTATGACATTGCGGATACGAAGCTTCGTACCCAAGGTCGCCAAGTATTTAGAAGGCTTTGCTTTCCGTATCCAGTACAGTGTTTTTATGTGCGAAAACACGGAGAAGGGTATGGCCGAAGTCCATAAGCGCCTCATTGTCTTGACACACGACGCTTCCAAGAAAACGATTCTTATCGTTCCCCTGTGCCGGAGCTGCGAAAGTAAGATGAAGACCATCGGAACGGCCATTGAAAGTGAAACGTATTGTATCATTGCCTGAAAGAAGGGATGTCATGAGTGTCCTCTACTTGCTCTCGTCCGGCAGTTACTTGCGGAAAATCAGAGATCGCCTGCTCATCGGCGGTGCCGATGGAAGTCATAAGAGCCTGCCCATTCAAAACATCGAGCAAATCGTCGTCAACAAGGGCGGCAAGATTAC # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-1.54, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 14134-13671 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGJ01000056.1 Megasphaera sp. DISK 18 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 14133 23 100.0 49 ....................... GGAAGATCGTTTTTTAAATCAAATAAAATATCGGAAGCCGTATTACCCA 14061 23 100.0 50 ....................... GCTACTTCGGCATACTTCATGGAACCATCGGCTCTAGGCCGTATTACCCA 13988 23 100.0 52 ....................... TCTGTTTCTTTCCTCAATTTATCAGAGGCGTCTAAATGGGCCGTATTACCCA 13913 23 100.0 49 ....................... TCCAGATTAATTCGCTAACCATTCTCTTTTTACGTCGCCGTATTACCCA 13841 23 100.0 50 ....................... TGCCGCTATCGTAGAACCTTTGGAACAGATTTCTCGTGCCGTATTACCCA 13768 23 100.0 52 ....................... GACTGCATCGTCGTTAAGATTATTCAGAACTGCCCACTGGCCGTATTACCCA 13693 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ==================================================== ================== 7 23 100.0 50 AATCCCCGTAAGGGGACTGAAAC # Left flank : TTACTTGCGCATGATGAAGTATGACTATGTCGGTTACAAACGGCCGGCTAAAGCAACCTTAGAAATCCTGCACGACTACTTCCAACTTCGTATCGAGCGGAATTGTATCAACCACGCCCATGACGAAGGCACCCTGTCGACAGAGGGCATCAAAGACCTCATCTTTGATTTGCTGCGGCGAATGGAAAATATATCGGAGCGTGAATCAGGAGAACTGTCAGACTTTGACCAATTGACAGAATAAGTCAAGAAAAGTATACTAATTATAAATAAGGGTAATACGTTAGCCGAAAGAAAACCGATTTTGGGGTGAACCCCCTGGGAGGTTTGAAAATTTCAAAAACGGCTGAAAATGGCGTAACTAAGGGAAAAAACGACACTGCCCAAATTTTATTTTTCACCCGGGTCGCCGAAAAAGAGGAAAAAAGCCGGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCAGGGAGCGGGTACTGAGGGACAGGGCCGTATTACCCA # Right flank : GCCAAACAAGCTTGGTCAGTTCAACTAACAAGACCCGTCGTATTACCCAAATCCCCGGAGTTAAATTGACTCCTTTTAGGAAAAAGGCGTTTGTACCATAGGGGACTGGAAAGGTCTTGGTTGGCAACGGTATATGCATTCCTGGAAGTCATCTCGATGCGTTTTGTATAACTTATGTAAACTATTAAAATAATAAATTACTTTTTTGAATAAAATCCTGTCATTTGGCAGGATTTTATTTATTCTGTGTCGAATTTGTAAATCATAGAAGTATTATTACGCTTTTTTAGGTATTTACCATGACGGCAAAGATGTAGCCTTTGCCGTAGAAGGAGTTGATATCGTTGCTGGAAATCTGCGAGATACCGCTGAGATTTCCCAAGGGGAAGGGAGTCCATCCTTCGATGGGCTCGGTCTTTCACGGAGCTTTGATGGAGCTCATAGGTCCTGACTGGGCCGGTGTTTTTCACCGCAAGGGGATGCGCCCGTACAGTCAGGCC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1962-2123 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGJ01000044.1 Megasphaera sp. DISK 18 contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1962 31 96.8 36 ..........T.................... ACCCAAACCCTATCCATAGGGGAGCTAGCCCCCTAG 2029 30 83.9 34 ...T.T..-.......T.............C CGATATTCAACGGAAATTTTAGTCGTTACTGCGG 2093 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 3 31 93.6 36 TCGCGCCCCTCATGGGCGCGTGGATTGAAAT # Left flank : GATGCCGAATCCGATGCCGGTGGTGCAGCGCAGTCATTGCAGCACCATATGAATGAGGCTTTCGGAATTCATATTCAGCTAGACGGGCAATTTGTTCAAAACCCTGACGGCATTCGCTTTGGCTTTGTCCTCCTGCCGGGTAAAAATGCGGAGGGAGACTTTTGTGACGGTACCTTAGAAGACCTGTGCTGTCAGATTTTAAAAGAAAACCCTAATGAATTTTCAGGGGAAGATTTATTGACGCTATCTAATTCTTATTTAGATACAGTTGAACATGAACGGGGAACCTCTTTGCGGACAGCTCATAAAAATAAATTGCACGCCTATTTTTCGGGAACCGATCGCTTCGTAGGATTGAAGATTGGGGAAGCCGCTCGCGCACAGTGTTTTGACTTTTCAAGCCCGGTCCTTGATTTTCTGAAAGAGGCCCTCATAGAACTCTCTTCATCGGATGAAACATGAGAGCTGGCTATTCTGAATAGTTGATTTGAAATAGTATG # Right flank : TGGCTCGGTGGTTATCGGCGAATTACAGGCCATGGCCGTGTCTTGCATCGAACAGAATAGATTATGACAGGACAAAGGAAAGACTTGCCTTTTGGATGGCAGGTCTTTTTTCTTTACCTCATTTTTTGTAAGTCCTTTTGTGTGCAGTGACATATTCTGTCAGGGCAGCCTTGTATAATGGAAAGAAAGCAGGGAACCCTTTCGCAGAGGTTGTTCTTTTGCCAAGGATGTAGGCTTGAGGAGAGGTGATTTGTATGGAAATGGAAATGAACGAGGAGAGACATCTTTCGTTGGTTAAGAGTGACGAAAAGTCGCGGGAGCCGGTTATCACGTCGGCTTCCGAAGAAATTGACGAAGCCGGTTCGATGGCAGCGGTCATGGCTGCGATTCATGAGCTGGAACAGGCTTTGTCCGGAGACGATGAGGCCGAGTGGCTCCCTTCCTTTCATCGCTTGACGTTCGTCATGGAAGCGGCATTGTCAGAGCAGGGAAAACGGCTC # Questionable array : NO Score: 8.35 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCGCCCCTCATGGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6605-6836 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGJ01000044.1 Megasphaera sp. DISK 18 contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 6605 33 57.6 33 .AGTCGTA.T..ACA....TA..........C. GCATGTACTGAAGCGCAAAACCAGCTTTACCAT 6671 33 100.0 33 ................................. TGTGGGAGACGATCAACATCGTCCGTAACATGG 6737 33 84.8 34 G.........C.T..................CT CTACGGCTTGCAACATCGCAACACAGATTATCGC 6804 33 84.8 0 ......C..TC......G.............C. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 81.8 34 AGTCGCACCCTTGTGGGTGCGTGGATTGAAATA # Left flank : GATTCCCGTCATCAGCAGCGTTAAATATGGTCCGTTCGGATTTATTTATGAATACACTGGCAGCTACCTTTTAATAGACAATGCTGTTTACGGAGACATCCGTGCATGTCACTGTAAAGGCGATTCTATGAATGGTTTGGGAATCTTTGACGGCGATGTTGCTTTGATTAGAATTCAGTCTGATGTTGAAAACGGAGAAATAGCCTTGGTCACGATTAATGAAAATGAAGGGGTACTGAAACGTGTACATAAGAAAAATAATATAATTGTTCTAGAATCTGCCAATCCTAACTATCCATTAGGAATTTTTGCCGGCGCAGACGTGAATCAAATCCATGTCGTAGGTCGAGTTATTGAAGTCCGGAAACAATTTTGACGGTATCTTCATTGAGGGATGTAAATAATCTTTGACAGCGGCTATCTGTCGATAGAAGAGTGCGGAAATTTCCTCGAGTATGGATTGACATGTTATATAATGTTACTATTGTATCACTTACATT # Right flank : ATGAATGGCTATAGCACAACCGATACGACCCAGGGAGAACTTCTTCATGATGACGGGATTGGAAAGACACCAGACTTAGGATCTGGCGTCTTCGACATGGTCATAGGGGTGTGCATTAAATCTTATCTTGTAACAGCATATTTTTCTTATTTTACAGCTATTCCTAGAGGGCTGACTTTCGTTGACAGCTCTCTATTTGTCATGCTATAGTAAAAACGATATAATATAAGATATAGGTCAGGTGTCTCAGACTTAATAGAGAAGCCGGTTCAATGCCGGCGCGGTCCCGCCGCTGTGAGGTGGAGCCAGGCTGCATGATGTCACTGTACGTTTTGTATGGGAAGGCGCAGCTTTGGCCATGAAACCAAGCCAGAAGAACTGCCTGACGGATAATCACCGATAGACCTGCGAGCGATGGGAAGGAGATTGTACGGAGCATATTCGGGGACTGTCGTCTATACGACGGTCCTTTTATCTTTGCAGCCCTTATCTTGCAGGTC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.09, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCGCACCCTTGTGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23756-22846 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGJ01000065.1 Megasphaera sp. DISK 18 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 23755 36 100.0 39 .................................... ATTTCTCGCGGAACTTGCATGGCTGTACCACTACCTTTG 23680 36 100.0 38 .................................... ACCAACAGGACACGTTAGGTGGGAACATAATATTCGGC 23606 36 100.0 34 .................................... CTTGTATTGTTGGCCAATGAAGAACTATATACAT 23536 36 100.0 38 .................................... TCGGTTAATTTCCAGTGCTTTTATTTTTTCCGGTGCTT 23462 36 100.0 34 .................................... TGTAACACGGTTTCCAGGCGGCGGACGCCGTCCC 23392 36 100.0 37 .................................... GAACTCGTTCCGAAGTTCGAAGCGTGCTTCGAAAAAT 23319 36 100.0 36 .................................... ACGAAAAAGGATTTAATGAAATTGAAAACGAAAGAA 23247 36 100.0 34 .................................... GAGAAGACGATGGTCGTTATCGCAGGACCACTCT 23177 36 100.0 37 .................................... AGTAGTAAGAACATGAATAAAAGATAGAGATACGGGT 23104 36 100.0 37 .................................... GACCCTCCTTTCTGCGCAACGCGCTGTGAAAATAATA 23031 36 100.0 38 .................................... GAAAAGTAATTGGCATTAGACGACAATAGAATTGGTTT 22957 36 100.0 36 .................................... TACCCACGTCTTTTTCCGACATTAATCGTGTACAAT 22885 36 80.6 0 ........................TT.....CCTTT | TTAG [22856] ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 98.5 37 GTCGCATTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : CCGGAAGGGGACTGAAACTGTACATAACAGTAGACTCTCAACTGGACTGTCATAACGTCGCATCACCCGAATCCCCGTAAGGGGACTGAAATCTTGTTTTATGCAGAAACCCTGCAGAAACGAGTTAAAAGGCCATCTACGGTCGACTCATATAAAACTAGATGGCTAAGAGGGAGAAGGCGCTCCTGTGCCCGATGAGAGGCATTTGCGAGGACATTCGAAGATGAGCCCTTTTCCGAAATTCGTTTGACAATAAAAGTCGAAAAACGTATACTTGAGATAAGTCAAAGTAATGCGACGGCTTTGGAAAACCGATTTTGGGGCCAAAAACCCCGTAGGTTTGAAAATTTTCAAACCTGCGAAAAACGGCATAACCAAGCGGATAAGCGGCACTGCCTGATTTTTATTTTTCACCCGGGTCAGCGAAAAAGGCCAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCAGGGAGCGGGAACTGAGAGACAGA # Right flank : TAGAAAAAGGAGGTAATGCTATAGGGGGACTGAAAACTGAATCTTGCATGAGAAAAGCCGATACCGTCATCTATCTGAGATGTCTGGTATCGGCTTTTGTCGTGGAAGTTATTTTTTAGGTACCAAAAATGTGCGTACTTGTAAATTTTATACCGGTAAGTATAATGAGGATAACCCGATGACGGGGAGACCTTATGCGAAAAGGAGACTTGACCATGGAATTTGAACAATTGATGAGAGATCGTTATTCGGTCCGCAAATTTTTGGATAAAAAAGTAGAACCGGCCCTCGTTGAAAAATTGAAGGAAGCCATCATGCTGGCGCCGAGCGCCGTAAACTATCAGCCCATTCGGGCCTGGGTCATCGAATCGAAGGAAAAACTCGAACAGATCAAGGCCATTACGAAATACCATTTTCGGGCGCCCTTGACGATTGCCGTCGGTTATGTACCGGGCGAAGCCTGGGTCCGACAGAGTGACGGACAAAATCACGGCGTCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6333-5931 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUGJ01000008.1 Megasphaera sp. DISK 18 contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 6332 36 100.0 38 .................................... CCTGATAGCTAATGCTATCAAGCTGTTTAGCTTCCTCA 6258 36 100.0 40 .................................... ACGAGGCATTAACATGGCGCTGCCCGTCTGAACTTGGAAG 6182 36 100.0 36 .................................... ATCGTATTCGGAAATTTCCGAATCGATCTCGATCAT 6110 36 100.0 35 .................................... TGAATATGAAGATCCTACAAGTGAGCACTATAAGA 6039 36 97.2 37 .....................C.............. ATGCTGCAACCACGGACTAAGCCCCCAGCGGCATTAA 5966 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 99.5 37 GCCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : ACGCGTCCGGGTCTACGAAGATAAATAGAGAATACGACCATCATACACAAAAGCTGTCTCATCAGAGGCGGCTTTTTGGCGTATAGAAGCTATCCGATGGGCTCTATCGCGGAGTCCGGACGGAATGTTCACCCCATTTCGAGGACTGTTCGCAGCACGGTACCGAAAAACGACGAAGACGCAAAAAGAGCTCTTACAATCGATCATAAGTCCTTGCAGGGAAGCTTCGACCTCATGTTAGAAAGGTTTGACAACAAAAGCCGAAAAACGTATACTAAAGAAAAGTCAAGGTAATATTGACCTTTGGAAAACCTATTTCAGGGTCAAAAACCGCCTAGGTTTGAAAATTTTTAAACCTGCGAAAAACGGCATAACCAAGCCGATAATCGCCATTGCCTGATTTTTATTTTTCACCCGGGTCAGCCGAAAAGGCGAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGAGCCCAGTCTGGGAGCGGGTACTGGGAGACAGC # Right flank : ATACCCGTGCCGTTCGCAAGGCGTAACTTAGTCTTTAGCCGCCGGCGTACCAAAATCCCCGCAGCCAAATGGACTCCTTTTGGAAAAAAAGGAGTTTGTGCCATAGGGGACTGAAACGCGGTTTCTAAATACCTTGGACGGAGGTTTGTTGACGCGTCGGCGGGCGCGTAAAATTGAAGATGGCATGAAAAAACGGTACCGGCATCGGTGAAGGATGTCTGGTACCGTTTTTGATGACGGGCGTCATGTTGTGGGAGTCTGACGACGGGCTGCGCCATCTCTGTCAAGGGGGACATGAACCGGCGAATTTCCAGCCGAATATGGGCTCGGGCTGACGTCTCGGAGGGAGGGCAGGGCTGCAGAAGGTTTTTGGCCTTTGTGCGTGCTCGGGCTCGTCTGATTCCTTCGGTCCTTGAAAATGACGGCCTCTTTGTGAGGATGAAGAAAATGAGAAAAATTCCTCTTTTCTCGATACCATAAGGTATCTGACTATATGAGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //