Array 1 189655-190222 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNHS01000036.1 Providencia stuartii strain 50655837 contig39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 189655 28 100.0 32 ............................ ATCGACGTGATACGAGGTTTCTGGGTTATATT 189715 28 100.0 32 ............................ AAGTCACTCCGTATCGGATTACTTACAAAAAC 189775 28 100.0 32 ............................ ATGACAGCCCCATTCGTGTTTTTTACTCGTGT 189835 28 100.0 32 ............................ TATATCGAAACCGGCTATGTAGTTATTGGATA 189895 28 100.0 32 ............................ ACCAATTAATAACATCCTGTTTATCAAAGTCA 189955 28 100.0 32 ............................ AGACCGTGAGCACTTAGCGAATCAGGATGATG 190015 28 100.0 32 ............................ AGTTAGTAAACTTAGCGATTTACTTCAATCAT 190075 28 100.0 32 ............................ ATCAATAACTAGCTTTTTAAATGTAGCTTCGT 190135 28 100.0 32 ............................ CAGACAAGCGGCAATCTATTAATGCCATCTGG 190195 28 92.9 0 .....................C..A... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGTTGGTTAATGTTTATCAGCGACATTCTTTGTTGGAATAGACCAAATGCCCTTATGGCAAGTAAGGCAGTATTTTTGATTATTTGTAAAGTCGTCATGGCACGGTACACAAAACCAATCCATAACCTTTAAAATCGGTAAAACGGAATGAAATTACTGATTAAGTTTATACGTTGAATGAGTTAACAATAAGGGCCATTTTAATAGATACATTAAAATGGCTCTTATTGTAATAAGTTGATTAATCAAGCTAAGGTTAAAATGTCACTATTACTTTTGAAGAGATTGTTTTATCGGCAGCTTCTAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATACCCTCTAAAAAATAAGGTATTTTGCACAAATTAACCATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : ATGATAAATGATTATCCTGTGTGCTTTCCAATAAGCTGCACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAATAATAAAATTAATCGGTGAGGCAGGATGAAGCTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAGCATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGACGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGGATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGCAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGCGAGATGATAGGCTGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 202770-202381 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNHS01000071.1 Providencia stuartii strain 50655837 contig70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 202769 28 100.0 33 ............................ AACATCAGGGCGCTTACCAATAGTTTTAGGGCT 202708 28 100.0 32 ............................ TGAAACTGTCAAGGACATGTTAAAGCACACAT 202648 28 100.0 32 ............................ TTCAAGGCATCATTATTGATATTTCGATGCTA 202588 28 100.0 32 ............................ ATTTCGTGCCGATATGTTTCACTTCTCATACT 202528 28 100.0 32 ............................ AAATAAGAACAAACGACGGGATTCACATTACT 202468 28 100.0 32 ............................ TATTTCTATTAATACCTTTTAGAGCCTGATAT 202408 28 92.9 0 ..........A.............A... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTTATATTTATGGATGACGCTCTAGCTAAAATATAAACACTATAGAATTTCTTTTCGATAAAAATCATTAGGGTAACTCTATTTTAATGCCATTAGTGTATAGCTGATGGTTATTTTATTTTTAATGGTGATGCAGAAAGGACTAGGGGATAATTGGTCAATAGGTATGTTTAACTTTACTTATTTGGTTAACCGGGATTTTATTTTTTCTAAAAGGTAAAAAGCGACTTTCAGCTTAACTAATGATTTTATAGGGCCATCAAACTATCTGTTAGGTGTGTGTGAAATATTTATTTTAATAGTATTTAATGTATAAAAGGTTGGGTTAATTTTTTCGTCTAATCAGCAAGTGATTTTCCTTGTTTTTTACCCTTTAAATTTTTAAGGTTTTTATATCCTTTTAAAACAATAGGTTATGTTACCTGATAAAAAAGAAGGTATTTAAGGAGAAATTGTTATAATTTACTGTTGCATAAAGTTTTTTTACTGATAATTTATA # Right flank : TACGTTTTAATATAACTTAAAATTTCTACCTTATCCTTTCTAGCACACCCTTAATAAGATTTAGTGATTTTCACTTATCATGCAGAATAAAAGACTGTTAGCCTTGATGCGAAGTCAGAATAAGGCTTATGATATTTTGTACAGGGAGATTATTATAGGAATATTACCTATGGTGAGGAGGGGTGTTGATGTGTATTTTGAAAATACCAGCTCGGTGGAGGTATTTATATGAATAAGCTTTTTCGAATGTGCAACCTATTGCTATTAACTGCAAGCTTCTCAATGGTCTCTTTATCTTCCTATGCAGATCCCAATGGCGGTCATGGTCATGGTCATGGGCAAGGAAAAGAGCATCAAAAAAATAAGCCTAACAAAGGTCATAATGGTAACGGAAAAGAAAAAGCAGATCATTTATCCTTAAATAAGAGTAATTCAATATCAGTATCATTAACTTACAATGAAGCAAGAGCACTCGCTTTAGACAGTGGTATTACAGGCTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : AGTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 209223-208715 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNHS01000071.1 Providencia stuartii strain 50655837 contig70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 209222 28 100.0 32 ............................ ATAGGAAGATAGTGCCCGTCGGTCACTTGAGG 209162 28 100.0 32 ............................ ACATCGAGACTAACGATGAGTCTGAGGGTGTT 209102 28 100.0 32 ............................ GATTGTAAAACTCTTTGCTGACCACATCGAGA 209042 28 100.0 32 ............................ CACGATTGCAGGTACAGTCATGACAATCGACA 208982 28 100.0 32 ............................ TAAGTAAAGCGCATCAGGTTTAATGAAATACT 208922 28 100.0 32 ............................ ATTCGAAATCCTCAACTTTTTTGTGAAGGCAC 208862 28 100.0 32 ............................ GTATAATCATATGACTTTTTAAACAGTTCGAA 208802 28 100.0 32 ............................ ACGACTGTGGAGATGAAACAAAAATAATCCAA 208742 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.6 32 GTGTACTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGATGGGTTCTTAACATTAAGAACAGATAATATAATTTCTGTCTCATCAAAAGAGCCGGAAGATAGTGAGGGAGAGCCCACTGAATGGGGGATAGGTGCTTTGCATTTAGCACCAAGAAGTTCAGATCAATTTAATCAGCTAAAAGAGATCCAAGGTAAAAAGGTAGATATCACTTGTGACCTATACCATGCAACCAATATTCATCACAAAACTCCGGTTCTTTGCAGTGTTGAACATTATGTTTTGGTTAAGTAATTGGCAGTATGGCATAAAACTGAAAACATAAAGTATCGTAGAAAAATGAAATAGGGCAACCTGCTATTCGTTTGTGATGAGTGACTGAAGGTACGATATTTTTATCTTTTTTACCCTTTATTTTTTGCTCAAAAAATTTCCCTTTAAAAATAATAAGTTATATTCTGTCGTAGAAATGAAGGTATTTTGCATAAAATCGTTGTAATTTATTGTTGCGCTAAGATTTTTTCCTGATAATTTATA # Right flank : TTGGCGATATCGCACTCATGGATGATTTTCTGGTGTACTCCGGATGCAACTCCCGCTATCGCTGGCAACACCAGAGGAAATTGTAAAACCAAAACAAATAGTGAAAGTAAAACAAATTATGCGGGAACCATATATTTGACATAACCTAAAACAGCAAAGTTTATCGATTATATTCGTGAAGCATTACACCATCAACATGCAAAAAGGCATCTCTTAGTATTCCCAATGATTGAAACTCATTTAACTTATGATAATACGTCGACTCTACCTGTTCACGGGTAAGGCCTGTGAGGTAATCACTTTGTTGATTTGTTTCCCAATAAATCTCACCTTTTCCTTTTATGAAGTATCCTCTTAAAAATCCAGGCCATTTATCACGCATGTTAGATATCAACAGAGAGTGGCTATCAGGCTGTGTTGCTTGAAATTCATGAAAAAAATCACCTCTAAAGATAAAAATATTATTGCATTTAGTACATTGATAGATATCTCTTACATAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 229622-229353 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNHS01000071.1 Providencia stuartii strain 50655837 contig70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 229621 28 96.4 32 ........................A... GAAAAAGACGACTCGTTAAATTGCGATTGGGA 229561 28 100.0 33 ............................ AAAAATGCGAACAATATATTTAAGACATCGCCA 229500 28 100.0 32 ............................ TTTATGTACTACACCTGCTGGATCATGTTTTC 229440 28 100.0 32 ............................ ATATATACATGTTGGCTTGTTGTTCTGCTGAT 229380 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCAAACGACAAAAGGAATTAGGTGTGACTAAGATAGAGCTATTTCTTGGTGAACAGGGATTAGAGATTCTCCCAAGAAATTGCGTAATATGTAGGTCAGGCAGGGAGCAGTACAACGTAGCCAACTATCTTTTTATGTGAGCATTGATGGCTGTTCATTGTGTCCGCTCGGTAGCGCTGAATAAAAAATGTGTAAGGGAGGTAATGATCAGCTACTGATAGTTATTTAAGTGAGGCTCATAAATGCTGGGTAACTCATGGGTGACACGGGCTAAAATTGATGTCACAAAGTCTCACAGATAGTTCAAATTTAACGTGTCACTATTAATTTTGATGGGTATAGAAGATGCACTGTTTTCCTCTTTTTTACCCTTTATTTTTTCACTTGAAATTTATTGATTAAAAATCAATGTGTTAAGAATCACTGAAATATAGAAGGTATTTTTCATAAAATCAGATGTAATTTATTGTTGAACATGGTTTTTTTCATGATAATTTATA # Right flank : CAGATAGCAGTGCGTGGTTACGTTAAATTCCTTGCTTACTACACCGATAATGATGATGCCCTTCAGTCAGCTACAGATGTTTATTTAGACGATGTAGCACAAAAACGCGCTCACAATATCCCAGCAACCAAATCCTTTGATGCTTTCCGCTATTGGGTAGTAGAGCAATCTGGTCGTTATGAAACTTTTGAAATGCTAGACGGTAGCCTACGCCGTGTCGCTAAATCAATCAGCTTTGCAAGAATGGATGGCCTAGCTTTTGGCGAACTCTACAAAGCCACACTCGATGTGCTTTGGAACTTCATTCTATTCCGTAAATTTCCCACCCAACAAGCTGCTGAAAATGCAGCTGGCCAACTATTGGATTTTACCTAGAGGCAAGACCAATGACCCAAAAACAAAGACCAAAGAAGAGAAGCAGTGGTTATCAGATGTAGCCGAACTTGGCTGTGTTTGCTGCCGCAATATGGGATATGGGGCAACTCCTGCGGAAATCCATC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 302952-302323 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNHS01000071.1 Providencia stuartii strain 50655837 contig70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 302951 28 100.0 32 ............................ GTAACTAATTTTTAAGCTGCCACAAATGGCAA 302891 28 100.0 33 ............................ CGCATGACCAGGTTCGATGGTTACTTGTCTGAC 302830 28 100.0 32 ............................ AATGCTTCATCACTGAAGCGAGAGTTTCAGCA 302770 28 100.0 32 ............................ ATCACTGAATCAACAAAAAGCTTAAAAGATAT 302710 28 100.0 32 ............................ AATCAGAAAGCAGACTCCCATCTAATCGCAGC 302650 28 100.0 32 ............................ TATTAATCAACTCACCACAGCCCACCTTGATG 302590 28 100.0 32 ............................ TACCCCTATCCCTAAAAAGACACCAGTGCTAT 302530 28 100.0 32 ............................ GATTGCAACTAGAAGCCTTGCACAGCGTTGTA 302470 28 100.0 32 ............................ AAGAAATGGAAAATGAGCGAAGGGCGAATTAG 302410 28 96.4 32 ...........T................ AGTATCATTGAAACCAATAAGTTGATTGCAAA 302350 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAGCGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTCTTGAACTGGATAGGTATAAGAAAGCTCAACTGTATTCAGTAAAATCAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGGCTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AATGAAACATCTACTTGATTTTATAATATTTTTCAAGGTGGCCATTTTGGCTTGTTCTATAAAATACAAAGGTAGCTTCTAATTCTTTATTTTCGTCCAAAGTCACCGATAATAAAGGCGAGGATTTATTAATCGACTTTGTAAATACAACTGGTTTATATGAGGTACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATGACCAATTTGATAACGATTATCAATTGAGTTCTGAGATAAGCATCCTACTGAAATAAAACAAATATTTCCTCAGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTATGCGTTTAGGCTTCTTTTCCGTCCGTTAGATGGCCCATTATCCGGAGGAACACCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCCTAAGCGTTTATTATCAACAATAGCCCCTTGGTCAACCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //