Array 1 1-2376 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT745748.1 Virgibacillus dokdonensis strain Marseille-P2545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1 32 100.0 34 ................................ GGTTATTTCTGAAGTTGGTATTTACGAAGCTGTA 67 32 100.0 33 ................................ TTGTTTAAATAATTTAGTGTAGTTTTTTGCAAC 132 32 100.0 35 ................................ TTTATCGGCGTTAATCGGTATAGCAACGGAAAAAG 199 32 100.0 35 ................................ TCCTATTGTCTCCCTTTCCCATTGAGCCATTCCTG 266 32 100.0 37 ................................ CTTGTTTATACTTACCTTTACTAATGCAGAATAAATC 335 32 100.0 33 ................................ CCTCTCATATCCAATCTCATATTTCATTGTTTT 400 32 100.0 36 ................................ TTCGCATTTATGCGTTCGAGGTTTTTTATTTGAGAC 468 32 100.0 37 ................................ GAAGATAGGTGTATGGGAAAATTAGGGAAGTACTGTC 537 32 100.0 35 ................................ TCGACGCACACGCATTACAGCAAGACTACAACGCA 604 32 100.0 36 ................................ TACGATAAATGGCACAACCCCGATTTATCAAAAGAA 672 32 100.0 34 ................................ ATGCATTGTCGGAAATACTACCGCTTGTGGCGTA 738 32 100.0 36 ................................ CGAACACTTGTTCTAATTGTAATAGATTCGACAGTT 806 32 100.0 33 ................................ CAGCAGACGTATTAGAGCGGTTGATACCGATAC 871 32 100.0 35 ................................ TCGCCAACCTCCGCACGTCTGTCCGCTAATCTGTA 938 32 100.0 33 ................................ TGCGGAAGATAAAGGAGGCGACATCAAAGGACG 1003 32 100.0 36 ................................ CATATATGCTTCCGTTTTTGTAGAGTGCATAGATGT 1071 32 100.0 33 ................................ TTTTCTTGTGTTGGTATCTAACCAATCTTTTAA 1136 32 100.0 34 ................................ AACCCAACGCTCGCTTGCGTGTTCCTCTCGCATC 1202 32 100.0 36 ................................ CCGCTTTAGCCGCGCAACCTCTGACGCTAGGTTTGC 1270 32 100.0 36 ................................ AAAGATATACACAAGGTATTGGAGGGCGAGGAATGA 1338 32 100.0 35 ................................ GAGGCGGGCTTTGAGTCGAGGGGCATCCGACAAGG 1405 32 100.0 35 ................................ GGTAGACATGGAAGATTACCTCCGATTGATAGATA 1472 32 100.0 38 ................................ TCGGCACATCATCCTAGATAAATCAGCCATAAAAGGAC 1542 32 100.0 34 ................................ GAACTATCGAAAGAAGGCGCAAGTACGAACACAA 1608 32 100.0 36 ................................ AAATGCCGAAAAAGCGGAAATATCTTTGGAGAAGGC 1676 32 100.0 34 ................................ TCTTTTGCTTTAGATGACTTATGTCCACGGGTAG 1742 32 100.0 34 ................................ GTCAACCTTGACGGAGAATACGCAGGTACGTGGG 1808 32 100.0 38 ................................ GTGTTTTTCGGCTAATCGCTTTGCTATACGAGCGTCAT 1878 32 100.0 35 ................................ CTTTATCTTGTATCATTTTTATACTCTCTTTTGAT 1945 32 100.0 36 ................................ ACTGATTATCGAGTGCCTCTCGATTATTGTAGTGAA 2013 32 100.0 34 ................................ TAATGATGTTGAAATAACATTATTTAGTTTGAAA 2079 32 100.0 34 ................................ AAGCGAGATAATATTAATTTAAATGGATTTAGTC 2145 32 100.0 33 ................................ TCATGTCAACACTCTGATCTATTAAATTTTCAA 2210 32 100.0 38 ................................ TTTACAGTAGCAACAACCCCTGCATAACTAACATTAAG 2280 32 100.0 33 ................................ TTTATGCGTTTGCGAGCCTCAGTTTCTTGATCC 2345 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ ====================================== ================== 36 32 99.9 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : | # Right flank : GAAATAAATCAAGCCACTTTCCAAAATACAACCAAGCCGAACAATATAAATGTTCGGCTTGGTTAGTTCTATCAACAATTAAAAGTGGTTAAGCCTCACCTGCTGCTACATTTAATTTCCATTAAAAACCTTTTTAGGTACAATTTCATAAAAACATATTGAAACCCACACCCTATCTAAATCGTAATAAACATAAATAGAAAAGATGATATTTCTACTGCATTTATAATCTTATTTAGAAAACTATCTTATAAAAGACCGCAAAGGAAGGGTTTATTTTGTACAAAAACATAGAAGAACCAAAACGAAAAATTTCTCCATACGCTATTAATGTATGGCGAATTACAAACACAATCGGACATACTATATTTCTCATTATTTTAGTCGTTTTACTTATCATGGACTCCCACTTTGCTTGGTATAGCTGGATTAGTTACATATTATGGGGCTTACTAGGTTTTACGATTATCTCTGCTGTTTGGAGTATAGTTTTTGAACCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 573-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT745763.1 Virgibacillus dokdonensis strain Marseille-P2545, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 572 32 100.0 33 ................................ GTTCTTTAATCTACGCCTTTCTTGGCGTATCTC 507 32 100.0 36 ................................ ATTACGTAACCCTTCGGATGTGCCCAACCGTCGCCG 439 32 100.0 35 ................................ TACCAACTGCCTTCCGAACTCTATCGCCTCCGCCT 372 32 100.0 36 ................................ TAAACGCTCTGCTTGTTCGACAAGCCATTTAATATC 304 32 100.0 36 ................................ AAACAATCAAAACTACCAAAAGAATTACAAAGGTAC 236 32 100.0 38 ................................ CAAACATCCAATTTATTAACCCAATAGCAGTCACCCCC 166 32 100.0 34 ................................ GGTTATTTCTGAAGTTGGTATTTACGAAGCTGTA 100 32 100.0 33 ................................ TTGTTTAAATAATTTAGTGTAGTTTTTTGCAAC 35 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 100.0 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : CGTTGTCACTTTGTCGAATATGTGCAATAAAATTCATGTAATCACAGCCTATCGTGTATATTTTATAAGGTTAGATAGGAAAATAATGCCATGTTGTTCTTGGGTAAATTGTACCATAAACCTTTTCTATTGACTACGGATGAATAAGTATATATTTTTAATTTTTCTAGCTACATTAGAGAAATTTGACTTATCGTTAAGTCTTATGGAGAAAACATTGTTCTCCTAATACTGTAAAACCAAAAAATTTTATACATAGTGAAATGATAAAAATATTGAAATTTAGCCACAATATACTACAATAATTAGTAGAAGGGCTTTTATACTTTTAGTGCGAACCCCAAGTGCACATGAAATCCCCGGGGGATTCGCACCAATGAAATAGAAAAATATGGATTATATATAACAAAAAATTGCAATACAAGCCTTTACTTACTTGATTTACACTTATAAAAACCTAATTAATTCCATAAAATTGGATTTTATAGGAGGAAATCGCA # Right flank : TTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9086-10655 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT745763.1 Virgibacillus dokdonensis strain Marseille-P2545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 9086 32 100.0 35 ................................ AACGAAATAAGTCGCTGACCATCCATCATAACCAA 9153 32 100.0 34 ................................ CATTGCTTCCTCGAGAGTATTTAATGTGTTTAGT 9219 32 100.0 35 ................................ GCTTGCCCTTTCGTCTAGTAAATCCTCTGGCAACC 9286 32 100.0 34 ................................ CCTAGCCTATGATCTAAAATTTGATAAATTATAT 9352 32 100.0 34 ................................ TCACCGAAAATTGGAACGGCCATGAAATAAGGTT 9418 32 100.0 36 ................................ AAAAATTGGTACATTAGGCCAATGTTTTTTTAGTAC 9486 32 100.0 35 ................................ TCACTGACGAATTATTACAACAAACGGAAGAAGTA 9553 32 100.0 36 ................................ CTTTTTAAACCAACTCATTACATCATCCAGTAAAGT 9621 32 100.0 36 ................................ CGACACTAATAGATTTGGAGTTGGGTCGACAGTGGG 9689 32 100.0 34 ................................ TGCGAGTATTACCTTCGGCTTTTTAGCGTCTGCA 9755 32 100.0 35 ................................ CTTAGTGATTTTAATTACCTAATTAAAAGTAAGTT 9822 32 100.0 33 ................................ AACGAATTAAAAGCGCTGATACAAGCGGATGCA 9887 32 100.0 33 ................................ CCCGAATCTCTCTTTGTAACTGTAAGAAAAACC 9952 32 100.0 36 ................................ TGTAATTTCCGCAGGCTCATCATCGTCGGCTTGCGT 10020 32 100.0 35 ................................ CATTAATAATTATACATCAGAATTGATACTTAATC 10087 32 100.0 39 ................................ CGACCGTTCGAGGTTTTTTATTTGAGACGCTCTTATCGG 10158 32 100.0 35 ................................ AATTCAAACATATATACCCCATTAAACATAAAGGC 10225 32 100.0 33 ................................ GCCGACCCCCTGAACGGCAAGCGCCCCAATTAA 10290 32 100.0 35 ................................ CTTGCAGACTTTCGCTTAAAAGGTCTGTCCATGGT 10357 32 100.0 35 ................................ CTCGACTACCCTCCCCTACTTATAAAAGACGAAAG 10424 32 100.0 34 ................................ TTTTTGGTTGATAATTGCTTTTGCTGTTGCTATT 10490 32 96.9 35 ........................G....... CAAACGGTTATATAAACAATGAAAGAAATATTGTA 10557 32 100.0 35 ................................ GGCACTCTCGGAGCAGCTATCGCATTTACGGCTAA 10624 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 24 32 99.9 35 GTCGCACCTTTCATAGGTGCGTGGATTGAAAT # Left flank : TTAGACGAGTATCCACCATTTTTGTGGAAGTAGGGATAAAATGTTAGTATTGGTTACATATGATGTTAACACGTCAAGTGATGGTGGACAAAAACGATTACGAAAAGTAGCTAAAGTATGTCAAAATTATGGTCAGCGTGTTCAGCATTCTGTTTTTGAATGTATTGTTGACGATACACAATTTGCGACATTAAAAATTAAACTTAGAGAAGTAATTGATGAGGAAAGAGATAGCTTGCGTTTTTATCGGTTAGGGAACAATTATAAAACGAAGGTAGAACATGTTGGGGCAAAAGAAACTATTCATTTAGAAGATCCATTAATTTTTTAGTGCGAACCCCAAGTGCACATGAAATCCCCGGGGGATTCGCACCAATAAAAGTGGAAAATATGGTTTGTTTTTAACAAAATTTAGCTGTTTTAGATGTAAATCACCTAATTCCCTATTATAAAAACCCATTTAATTCCATAAACAAGGAATTTTATAGGAAGAAATCGCA # Right flank : TCGACAACTCGATCATTTTATCCTCAGTTAAAACAGGTCGCACCTTTCATAGGTGCGACAAATATCTTCACAGCATTCATTCAACCCGTTCCGCTATTTTTAGGAGATGAACCATATATTTTCCATCTTATTGCTTTTTGTTAACCCCATGGAGAATGTAAGGAATGATTGGTTGAATAAATGCTTTTCTCGATTGCTGACTGTTTGTTCGCCATTCAACAGAAACACCATACATACCCCAGCTTAGCATGATGGCTGTGTTTTTTAAGGCGGAACTTTCAGAAATGGAGTGCTGCTTTAATAATATGGGATAAAATATGTTCGTTAACTTATCTATAATGATACGAGATATGGTATCCTCATAGCCTGATTGGCAGCGGTGAGCCAATGAATCCCAAAAGTTAGTAATAGCAATAAAAGTACTAATAATCATATCTTCATTGATTTCTTCATAATCACTTAAATCAAAAGTTATATTTGTTATTAATCCCTCTTCTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTTCATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3172423-3174121 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT745763.1 Virgibacillus dokdonensis strain Marseille-P2545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3172423 32 100.0 35 ................................ TACTTCGTTTGCTTCTGTATTATCTTTTTGCGTTA 3172490 32 100.0 35 ................................ TTCACGGCGGCGGTCTTCTTCGCCGGGTCGTTGGT 3172557 32 100.0 34 ................................ ATGATAATGATGACATAAAAGACCAAAATGAGTT 3172623 32 100.0 35 ................................ GTATAAAGCTACTACCATCAGCATTGCCACCGAAA 3172690 32 100.0 34 ................................ CACCTGCATCAAATGAATAGCCGCCGCTTTTACC 3172756 32 100.0 35 ................................ TTCTTTTACTAGTTTTTGTTGGCTTTTTGGTAAAA 3172823 32 100.0 35 ................................ TCGCATTATTGTCATTGATAAAAATTAAATTTTTA 3172890 32 100.0 35 ................................ CGTTGCTTGCGGAAACGTATGCGTCGATTATAACG 3172957 32 100.0 36 ................................ CGAATTATAGGGATTACCATAATTGAAAGACTTAGT 3173025 32 100.0 34 ................................ TTATCCGCTTATACCCCTTACGTATGCTTGATTC 3173091 32 100.0 36 ................................ GGTCTCCGTACTCTCCAGACATCGTTAAGACTACGT 3173159 32 100.0 35 ................................ TACTGCACGTCTGTAACCGTCCGTGTTATCCCAAA 3173226 32 100.0 34 ................................ TTGGAGACGAAAATCTAAACTCTAGAGAGTTTAG 3173292 32 100.0 34 ................................ CGTTAAAAAAGCCCTGTCTATGGTTATTTCCAAG 3173358 32 100.0 34 ................................ AACGACATTAATGCATTTCTTAAAAGCAAGCGGA 3173424 32 100.0 35 ................................ GGAAAATGATAATAAACAGGAAGGTAGGAGATATA 3173491 32 100.0 36 ................................ GTCACCATAATTTGACTTCATCATCCCCCGTGTTTC 3173559 32 100.0 36 ................................ CAACTATTTGCACGCGGTTATCATCGCCAAGTCCTA 3173627 32 100.0 33 ................................ CTCATCAGACATGTCATAATCACGATTATATTG 3173692 32 100.0 33 ................................ TCGATAGTTTTAATGGTCTTATTGACCTTAAAA 3173757 32 100.0 35 ................................ ACAATTATTTGGGCTTTCTTCACCCCTACTCCTTT 3173824 32 100.0 34 ................................ ATGTTGCTCAAAGTATCTACTAGAATTGTTCCCC 3173890 32 100.0 34 ................................ CATCCACGCCACGCACCATTTGCAAAGGCTCTAA 3173956 32 96.9 34 ...........................T.... CGCATCCTCAATTACTACCTCACCATCGTCACAA 3174022 32 96.9 34 ..........A..................... TGTTTGAACATGGAAAGTAATTGATTTAAATCCT 3174088 32 93.8 0 ...................T...A........ | TA [3174111] ========== ====== ====== ====== ================================ ==================================== ================== 26 32 99.5 35 GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Left flank : ACAAACAAAAGGCGGATGAAATAAATATTTAGAAATATTTTATTTTTCTGTAACTTGATTTCATTGTTTGAAGATGTTTGCCTAAAGATTGTACAATTCATTCTTTTACACGTTCAAACTGATTTTGTGTTCACTAAACTCGCTTGCAGTGCGTGGCAGATTAGATGGTACTATCTTCATGCATGAAATGACGCTTTTTTTATAAAGTGAAACTTCCATGCGCAGTGCTATTACTACTTGGCATGACTTATTATTTGAACTATCATATAATATTTTTAGATAAAATATGGTTTATTGGAGAACTTTTTTAAGAAACGAAATTAAAAATTAGGTGCGAACCCCAAGTGCACATGAAAACCCCGGGAGATTCGCACCAAAAATCACTTGCTTTTTTGGTGATTTTTATAATAAAGTTGAGAGTAACTAATCATATTTGAGATTTCTAATCTAAAAATGGACTGTTTTTGATTGTTTTTGTTAATTTTTAGGAAGAAATCGCA # Right flank : TATAGCTCAATAGCGCCCTTACCTCGTGGAGTAGCATCTTGTATTAAAATCAACCTATCGTAGTCCTTCTTCGTCTAATAGTTACAAGGAGGAAATACTATGAAAGAACAAATTAATTATTTGATTTTCTCAATACTGACATTCGTTGGTTTTACGTTGATGTTTCCTGAGATGGGTAATGTAACTAAAACCATATATTTTGCATTCATTATATGGACCTTCATACTCATCATAAATTTAATAAGAATAATAATGAAGAATAAAAAACATCTTAGCTATTTTAATTACTTAATTGGCTTCCAAAATATAAGTCACATGAAATAAGTTATATTTCATGTGACTTATCATCAAATAATCAATAAAACTGCATACCATTAATGACTCTTAAGAAAAAAACCATTAAGCCAAAGGTAGTTGGTACCTAATTACCCTCATACATATCATCTTAACAAAGGAATACGGTCTCTATATAGCTCCATTTGCTTTAGATTTTTATCATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTGTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3183966-3185269 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT745763.1 Virgibacillus dokdonensis strain Marseille-P2545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3183966 32 100.0 35 ................................ CTTTCAATGAATACTTTAAAGCGTGGATGAAAACA 3184033 32 100.0 37 ................................ TGCATTTAATCGCCCGTAATCTCGATTGCACAAAGCC 3184102 32 100.0 36 ................................ TGCTTTGATTAAAATCATAAATAATTGAAGAGAATA 3184170 32 100.0 34 ................................ ATTTTAAAACAACTCCTTTAAGGTTTTTTTAACT 3184236 32 100.0 35 ................................ CTCGACTATGTGATCATCTAATTGCTTTTGCATGT 3184303 32 100.0 38 ................................ ATTTTGCTGTGCCAACGAAACTACACTCGACAATACGT 3184373 32 100.0 33 ................................ ATCCTCAAATGAGGAAGGACAAGAAAAACAGAC 3184438 32 100.0 35 ................................ GCCGTTGTTATACGTATTTAAACCGATATTTAATC 3184505 32 96.9 35 T............................... CGTAACCGGGTTAACAAATTCACGAGCGAAACCAA 3184572 32 100.0 36 ................................ CGTGGCATGTCTTAATACTCCCTGAGCAAATACTGC 3184640 32 100.0 34 ................................ GTAACAACTATCAAAAATTCGGTCGATTGTTATT 3184706 32 100.0 37 ................................ TCTTAAAGCTAAAATTGTTTTCTCGTCCATTTTTTAA 3184775 32 100.0 35 ................................ AGCTATCATCCAAGTAGATTGCAATAATGAAAAAG 3184842 32 100.0 34 ................................ AAAACAAAAACAACAAGCTCCTGGAAACGAGAAA 3184908 32 100.0 34 ................................ TTTGCCAGCCATGCCCGATTCCGCAACCGGGTTA 3184974 32 100.0 34 ................................ ACACGATCATCATCATTAACACTGTAAAGTACTG 3185040 32 100.0 35 ................................ ATCATGTAAATCTCTCCATACACCTGCTTTTCTTA 3185107 32 100.0 33 ................................ TTACTTGCATTTACAAACATCTTATTAGATGCC 3185172 32 100.0 35 ................................ TGGCTTTCGAGCTTTTGATTGGACTAAATTCCCAT 3185239 31 78.1 0 .........G...C.......-AC..G.G... | ========== ====== ====== ====== ================================ ====================================== ================== 20 32 98.8 35 GTCGCACCTAATATAGGTGCGTGGATTGAAAT # Left flank : GACCTTATCATATTTATGAATTATTGAGAAGTTACCAATTATCCTAAAATTTCATGAACCCATTCCATCCTTTTGTAAGAACAACACGGATAACCATGATGCTACTAAAAAGAAGAACAAGTAAATGTCAAAAAATATCGTTACTGTGATTTAAATAAAATTGCTATAAGGAAGACACGTATAGTCAAGAATAAGTAATATTGACGTTACAAAAATTTGCAAGCTAGAAACTAAAAAACAGTATTGTACAATTATATTCATGAAATGACTAATTATGAATTATGCCTTATAATGAATATAAAATTATTCATATCATTTCAGTTTACTTTTTAGTGCGAACCCCAAGTGCACATAAAAACCCTAGGGGATTCGCACCAAAATTTAAGTAATATTACGGTAATATATGTAATATAATTCCATTTACACAAATTATTTGCGATTTCTAAGCTAAAAACGGGCTGTTTTTTATGATTTTTTTAACTTTTTAGTGTAAAATCGCA # Right flank : TCATCACATAAAACTTCAATAATCATGAAACATCGCTTGTATTTCTGATAGGTCATCCGTCAGAGTAAGTGCTAACATTAACAATATTCTAGCTTTTTGCGGTGACAAGTTATCTGCGGTTATAAAAGGAAAAGTATCAAAACTTTCAATAGGGACAACCCGTCCTTCAAAGCACCGACTACTTCTAACCACTACTATTCCTTTTTGACAGGCTTTTTTTAGCGCCTTCTCCTCTTTTGGAGAACACCTTCCCGCCCCCGTCCCAGCTAACACAATTCCAGAATACTTCCCACTATCGACAATAAAATTAATAATATCTTCGTTTACACCAGCGTATGAATACACAATGGCCACCTCAGGTAAGTTTCTAACGTTGCTATTATCATTAAACACAGATTGAAAAGTATGCTTTCTAGTTGGATATCTATCATATAGCACGGTGTGTTCCGCACTTACATACCCTAGAGCCCCCGCTTTTCCTGATTGAAATGTTTCCAAAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTAATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.30,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 3190741-3191578 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT745763.1 Virgibacillus dokdonensis strain Marseille-P2545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3190741 32 100.0 35 ................................ TCTTTTATATCACTCTACATCCACAATAATATTAG 3190808 32 100.0 35 ................................ TGATGGACTTTGACCACTAACAAAAAATCGTTTTT 3190875 32 100.0 34 ................................ CTTAGATAAAAGATGAATATGTCGTGCCAAATAA 3190941 32 100.0 34 ................................ ATATCCTCATCAAGATCAAATAATTGATACAATT 3191007 32 100.0 37 ................................ AACAACTTACCGTACATTTCTGTCAGCTGGCCAGTCG 3191076 32 100.0 36 ................................ AAATTGTGCTCTTACCATTTCTACTATTGCAACGTC 3191144 32 100.0 35 ................................ AATCACTCTATATCCGTAATACCTTGGTGGTGCAA 3191211 32 96.9 36 ....................A........... AAATATCAATTCGTCATGAATAGTCCCCCAAAGCGA 3191279 32 100.0 34 ................................ GTAGAGATTACAACACCAACGCACCAAGTTATTA 3191345 32 100.0 35 ................................ TTTAATGTTTTCTTTGGCGTTTTCGCATTATATGA 3191412 32 100.0 35 ................................ TTGCAATAAACAAAATGAAAACAACTAATCAAGTT 3191479 32 100.0 34 ................................ AAATATTATGGAATATTTTACTGATAATGACCTA 3191545 31 90.6 0 ...........................-.C.G | A,AA [3191566,3191570] ========== ====== ====== ====== ================================ ===================================== ================== 13 32 99.0 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : GGAAATAGCATTAAAAACAAGAATAAAGATGAAGTTTTAAATATTGATCCAGAATTAGAACTCTGGTACAAAGAATTACCAAGCAATGGAGAGGAGGATATGCGTCGTCTTAAAAAAATTTGGGATGTTTTTAAAGAGGAATAAAATTGGTGTTGTAAAGCTTTCTTCATTTTAGAGTGTATAAGAAATTTTTCTATTGGAGTTTGGTTTCAAAAAGGCGTTCAGAAATTTGCTTTATATAATACGTCAACAGATAACTAAAACTTTCATGACCGCCTTTTGTGTATTCATTAATTGTTCTAAATACAAAAATTTTTACATAATATACTTGGTGCGAACCCCAAGTGCACATAAAAACCCAGGGGGATTCGCACCAAAATCCGCTTGCTTTTTTGATGATTTTTGTAATAATATTGAAGATAATTAGTAATATTTAAGATTTTCAACCTAAAAATGGACTGTTTTTGATTATTTTTGTTAGTTTTTAGGATAAAATCGCA # Right flank : GCTGGTATAATAGCCATTTTTACCTTAAAATAATTCAGAATTATCCACCATATCCTTTATTGAAGATGTTTGTAACTTCCCCCTATAAATTTGTAGTTGCCACTAATAAACCAAAGTTTTTAGTGATCAAGTATTAAAAACATACCTATACATAATTTGAAAACTTGCAGGTGTTTCTTAGCCATGTATAGAAGTCTACTATAATAAAAGAGTTAAGGGGAAAGGCGAGTTTTATTATTGAGACAAGAACTATAACTGGGTTATTTACATTTGTTTTATTAATGTGCATTTCAATGGCGAATATTAAGATTTGAAGCACCAAATTGGAAAGGAACATTTTTTTAAGTTCAATGTTAGAGGATATCCTGACGGTGATAACGGAAAAGCCGAATTGTATCTAAGCAAGACAACGTATTCTTTAAATTCAGTAAGCACGAGATGGTATGATTAATTATACTTGTAGCATAGGCATAACATATTAAGGGGTGATTCATTTGAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //