Array 1 25294-26582 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXJ01000071.1 Pseudomonas aeruginosa isolate X, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25294 28 100.0 32 ............................ ACACGGGTGACTATGCGTTTACTAGCCATAGA 25354 28 100.0 31 ............................ GCTGCCGGACGAACGCACGGCGCTCCAGGTC 25413 28 100.0 32 ............................ TCGACGTGCTGGATATCCCTGCTCGCACTCAG 25473 28 100.0 32 ............................ TGCAGCGATTGCACCTTGGCCTGCTGCCGATC 25533 28 100.0 32 ............................ AGGCCAAGGCACATTCAGCGTCGCCGACCCGC 25593 28 100.0 32 ............................ ATTGGACAGCACTACCCAGCACTCGGCAGGCT 25653 28 100.0 32 ............................ ACTGTATCGCCGCAAACGAGCCCGTTCTGGCA 25713 28 100.0 33 ............................ AGTTGATATCAAGATGCCGTGCGGCTCTGTATT 25774 28 100.0 32 ............................ TCGCCCATCAGCCAGATGCAGCGCAGCGTCAA 25834 28 100.0 32 ............................ ATCCATAGAGCACGCTGTTGATGCGCACATGG 25894 28 100.0 32 ............................ ATAGAGGCCGAAGCTGTAGCCGGTGAAATCAA 25954 28 100.0 32 ............................ ACACCAAGAGTCGCGGCGACAACTACCAGACG 26014 28 100.0 32 ............................ TGCGGACCCGCGCCGAGCAGATCGCCGCGACG 26074 28 100.0 32 ............................ ACTGGAGACGAGCGCATGCACGACCCTTTCAA 26134 28 100.0 33 ............................ GACCAGGGCGTCGACAGCCGCAATCTCCATGGC 26195 28 100.0 32 ............................ TGGTAGGCCGAGCGGACAAAGGCGGTGGCGTG 26255 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 26315 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 26375 28 96.4 32 ..............C............. TTGGGCTTGGGAGTGCTGCAGTTAGACCTGCC 26435 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 26495 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 26555 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTGGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGACGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 36986-35456 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRXJ01000071.1 Pseudomonas aeruginosa isolate X, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36985 28 100.0 32 ............................ GCAAGGGGCGCTTAGGTGACCGAAGGCTGAGA 36925 28 100.0 32 ............................ ATAGACATAACTCCCGTCTGGGTCGGTAGTGA 36865 28 100.0 32 ............................ TCTAACCAAGCTTCGACCCTGCCAGGGCCTCG 36805 28 100.0 32 ............................ TTTCGGCGGAAATTCAACCCCCTGGAGACATG 36745 28 100.0 32 ............................ ATCCCGATCTGGAGCCAGGTGTCGTAGTCTTC 36685 28 100.0 33 ............................ TTGGCAACGACGATCTGCGCCCATGCTTCGAGG 36624 28 100.0 32 ............................ CACTAGGGTACAGGACTGTCGAAAGACTGCGC 36564 28 100.0 32 ............................ TACAAGGACAAGCAGAAACACTACGAGTGGCT 36504 28 100.0 32 ............................ TGATGTCCACTCGCAGTTTCAGTGATGATGAT 36444 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 36384 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 36324 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 36264 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 36204 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 36144 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 36084 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 36024 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 35964 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 35904 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 35844 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 35784 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 35724 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 35664 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 35604 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 35544 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 35483 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //