Array 1 26-1326 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJGA01000010.1 Caldibacillus hisashii strain C4 NODE_10_length_76202_cov_49.0937, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 26 30 100.0 35 .............................. TGGGGGTTAGAAATATATGATACCTGGACAAGATC 91 30 100.0 35 .............................. ATGCATGGTAAGACTTCCCAGAACCTACAGAACCA 156 30 100.0 38 .............................. CTTAATTTGGAAACGGAAGAAAGCTAAAGGGCGGACGG 224 30 96.7 35 .....C........................ TTGACGATGTTTGACGCGATTTCTTCGCTAAGTTG 289 30 100.0 38 .............................. AGTGGAACAGATCACAGAATGATTGAAAGTGTTACTCC 357 30 100.0 36 .............................. CTAGCATATTTGTTCGCATCTTTGCATATCCATGCT 423 30 100.0 36 .............................. GCCTACAATAAAACCACACCAACCGAAAGCGCAATC 489 30 100.0 38 .............................. GCGATTCAATTTCACGTGGTGTGAGGCGGAGATACGCC 557 30 100.0 37 .............................. AACCAATTGGAAACTGTCATTTCAGGAAAACAAGATC 624 30 100.0 37 .............................. CGGATTGTCCTTCAATAGCTTGTCGATCGTAGCCCAT 691 30 100.0 35 .............................. CGCAAGCCATTTTTCGCTTGAATGTCTCTAAAAAA 756 30 100.0 38 .............................. CCGACGTTAAGCCCGTTTAACGACTTAATGTGCTTAGC 824 30 100.0 37 .............................. CAATCACAACGTACCTCCCGTACAGTCCTTAGCAGGC 891 30 100.0 41 .............................. AGGACAATAACCCGTCGTATGAACGGTCAGACATGTTTGGG 962 30 100.0 37 .............................. ATGTCAGTGATATAGATATCAAAAGGAGACTGGTCAT 1029 30 100.0 35 .............................. CTTCATAATTTCCACGTAAGTCCTCGTCTAAATCA 1094 30 100.0 39 .............................. CAGGACTGTCGGAGCAACAAGATGGCCAATACATTAAAC 1163 30 100.0 35 .............................. AACACAGTGCCGGCACTTGCTACGACGGTTACAAT 1228 30 100.0 38 .............................. TTACGAAGAGTCCGCCAAAGACCGTCGTTGACCATTTC 1296 30 80.0 0 ...............T...AT....C.TT. | T [1314] ========== ====== ====== ====== ============================== ========================================= ================== 20 30 98.8 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : CTTATTAAATCAAGGATTGTTTGGGG # Right flank : CTCTGTCATTTTCAAACTACCACCTTGTCAATTTTATTGGTCGTATCATTGTTGATCGTTTTTTCCCATTTTAAACTGAGATGAATCATTAGAATTTGATAGCGTTTATTTGTATCGTTTTATATAAAGCAAGGAGATGTTTTAATATGACAACAATCGCATTTGATCTTGATGATACATTGTATGACAGAACGCAACCTTTAAGACAAGCCCTTTTAGAAATTGATGAAGCGAAATCTCTCCCTTTTCATAAATTTCTTAACGTTTTTCAACAAAATAGTGATATTGCCTTTGAAAAAGTGAAAGATCATATTTGGACACTAGAAGAATCACACATTTTCAGAATTAGAAATACGCTTCATCAACTGGGAATTGATATAAGCTTAAGTAAGGCACAAAATTTCCAAGACCAATATAAAAAAAATCAACAACAAATTGATCCCTTTCCATGTATCTTAGAAATTTTAGACTTTCTTCAGACAAAAAATATACAAACGATA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 25059-25624 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJGA01000046.1 Caldibacillus hisashii strain C4 NODE_46_length_29693_cov_51.3092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 25059 30 100.0 39 .............................. ACCGTCATTTCAATTTCTTGGTCCTTCTCGTAAATCTCA 25128 30 100.0 37 .............................. CCTCGGTCAAACGCTGCCTATCCGTTTCCGAGTTTTT 25195 30 100.0 40 .............................. CTGAAATAGACTATTTCTAGATAATTATATGTTATATCGT 25265 30 100.0 37 .............................. AGGTATAATAAATCAATAATTTGCAAAGGATCGTTTA 25332 30 100.0 36 .............................. ATGGGCGAAGGTAGTATTTCACAAGTTACAGCAATC 25398 30 100.0 36 .............................. AAGTATCACTAAATAAAATTAGAGAAAAATCCCTTC 25464 30 100.0 35 .............................. TGTTGTATTCCTCGTCATTTGTAAGGTTTTCTTCA 25529 30 100.0 36 .............................. TCCTTTTTGCGAAACGAAACATACGAGGAAACCGAT 25595 30 96.7 0 ......................T....... | ========== ====== ====== ====== ============================== ======================================== ================== 9 30 99.6 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : TCTCGGTTTTGTTGACTCTTCTGTCCTATTGGTGGTAATGATTGCTGGTTCACCTAATAATTTACCCTATTATTTGAAAGTTTTTATTGGATGTCAGGATGATAGAAGCCTTTTGCATTCATCAGGTGAAAAAAGTTGGATCTCCTGTTGCCCCATCAATAATGACGAGATTAGTATTTGGGATTTTTTTAAAACGTGTATGGAATTTACGAGATATTTCTCTGTTTTTGCGGAATGGACCAGTTCTTTCATTGAGAAAAACATCACGTTGTATTCTTGACAAAATGTAATTGGACTAGTGGAAAATTTTTGTCGTCGACCTGCAGTAGTGTACAAACCCCGGGGGATCGACGACAAGTTATTTTGAAAAATAATCAATAGAAAATGCCTAGATTACGTGTATTTATGGAAAATATAATTGCTAGAAAACCAAATTTTTATTATAATTAACACAAAACCACCAATACAAAAAAACCTTATTAAATCAAGGATTGTTTGGG # Right flank : CCTGGTGAGCATATTCTTTTAATAAGTTGATTAATATTTTGCTTGACCCCATAACCTGGCTTTGTGGGGTTTGAGAGTGTAAAATATTTTGTGTAAATAGAAATGCACTAAATAATGTTCATAGAAAAAGGAAGACCCTTTCTGTAGAATAAAGTTAGCCTATAAAATTCACAGAAAAGAGGTCTTCCCTATGAATCATCTTACTACAGATTTAATCGAAGCACTAGCACAAAAACAAGATATCGAAGAAGTTTTTCGTCATCATTTGGAAACAGCCATCAATCAGCTGTTGAAACATGAATTAACTGTCTTTTTAGACTATGAGCCTTATGATCGAGAAGGTTTTCATTCCGGCAATTCCCGTAATGGTAACTACGATCGTACCTTTAAAACCGAATACGGAGAACTACACCTTCGTATTCCTAGAGACCGTAATGGAGAGTTTCAACAACAAACAATAGCTCCCTATAAGCGTTCCAATGATACGCTGGAACAGTTTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 24555-25647 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJGA01000053.1 Caldibacillus hisashii strain C4 NODE_53_length_25716_cov_45.7712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24555 30 100.0 34 .............................. AGGACAAGTACGGTTTTTATTATTTAATCCTTGA 24619 30 100.0 38 .............................. CTAGGAAAACAGTAAGAAGGAAAATCAACCAAGGAATC A [24642] 24688 30 100.0 38 .............................. TCAATACGCTCTAAGAATTTGCCATCCCACTTTTTCAG 24756 30 100.0 36 .............................. TTCGCCTTCCTCTTTCTTTTTGTTGTCAATACGCTC 24822 30 100.0 34 .............................. AAAAATGGATTTGTAAATAAAGTAAACGAACTCA 24886 30 100.0 37 .............................. TAATACTTCCAATCCGTTTTGTACTAGCGCGTTAACC 24953 30 100.0 38 .............................. GGAGGGGTAGAAATGATTAAAATAACACGAGGTAGTGA 25021 30 100.0 38 .............................. CAAGATTCCAAGAAAGTACTGGAGAACATTCTCTTACA 25089 30 100.0 32 .............................. CTGTTCTTATTTGTGTTGCCCATAATTTAAAA 25151 30 100.0 36 .............................. TGGGCACTCATAAAAAAACCTCCGTTTCATACCCCA 25217 30 100.0 38 .............................. AACCGATAGTAAAGGAGTTTATCTTTATTTCCCCTTAA 25285 30 100.0 37 .............................. AGTAGATTTATACCTGTTTGGTTAGCATTTTGTCTAG 25352 30 100.0 36 .............................. CCATTTCGTATCACGGGTACATCAAAGGCATTTTCT 25418 30 100.0 39 .............................. GGCTATCCCCTCCTAAACCCTTTCCCCCTAACCATTTAC 25487 30 100.0 37 .............................. CCACATTTCAACCTGCTTCAGAGCTTCATGTAACATA 25554 30 100.0 34 .............................. CAAGAACAATTTTCTATATTTGTTCTAATTTCAT 25618 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 100.0 36 GTTCACATCTTACCTATGAGGAATTGAAAC # Left flank : GGATTCGGTTATCATTTATATGTTCCGCTCCAAGCAGTATACAGGTAGACAAGAGATGGGATTAAAAAAAGGTGGAGAAGAATTTTTACTATAAACCTTTCATTAATAAATGATTTCAGCATTTCTATTAAAAATTGTCTATGTAAACATACTTTAATAGAAGTATGTTGGTTGTTCACTAAGATTTTGATAGAGATGAGTATCTTTAAATTTGGCGGAAAGAACTAAGTTTAAGCGAAAGTATAAACTTAGTTCATCAGTTGGAAGGAACGAAATATATTGTGTAGATAGGTTAATAATATTCCTTGGAGTTTTGTCGTCGACCTTCATTAGTGCACGAACCCCGGGAGGTCGACGACAGTTATTTTGTGAAATGATAATTGGAAAAATGCTTAAGCCATCTGGTATTAGGAAAATATCATTGCTAAAAAATAAAATTTCTATTATAATTAATGCAAAAGTAACAATACAAAGGAATCTTATTAAATCAAGGTTTTTTG # Right flank : AACTGCCCTACCGTAAATTAGTAAAGATAGCCTTTTTAAGGGGGGAGTTTAAATAATATTTTTTCAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 49-298 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJGA01000060.1 Caldibacillus hisashii strain C4 NODE_60_length_19967_cov_56.6481, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 49 36 100.0 36 .................................... AGGGTAAGGTTGATTACAACGGTATACGCACTCTGA 121 36 100.0 36 .................................... TTTCATCGGTGGTTATCGGATGAAATCAGTAGTGCA 193 36 100.0 34 .................................... GGTTGATTCTGCCTCAGGCGTTACAACATGCTTC 263 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 100.0 36 GTGCTAATGCCTCGTATCATTTCTTTTTTCTTGGAC # Left flank : TTTTTCTTGGATCGGATGAGTTGACAATACATACAAGGCATTTGTTGCG # Right flank : CCGCAGGGGGTTTTGGGCTATGGTGGGCTTGGGTTTTAGAAGCATGTTGCGAGAGGTTATGTAAATCCATCAAAATTCCTTTTAAAAAATATTGTGGTTATTTTTGTATTCTTCTTAAAAAGGTTTGTTTTACCTATAGTACGAGCACCCACCATGCGAAATGTCCAATGTGGGTGCTCGTACTCAGATCCAAGAAAAAAGAAATAAAAGAGACATCGTCCAGCAATAGGAGTTTCTCACACCCTGCAGCACTTATAGCTAGACGGTTGTCCTGACCAAAAGACAGAACCTCGTAAGTCCATTATATAATATTCCCTATTTTTTAACAATATATTTTTGTATTTTTTTCATAAGATTTCTTTGCTATATCTTTTCAAAATATAAGCCGCTTTAAATCCAATGGAACAAATTCTTTCCCAATTGTTGAGATTTTTTTAGATAGTTGACCATCTTTCACTGGCCCGATGTGAACAAACATTACTTGGTCATTCTTATGATGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATGCCTCGTATCATTTCTTTTTTCTTGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1475-1158 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJGA01000141.1 Caldibacillus hisashii strain C4 NODE_141_length_1503_cov_32.2825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1474 36 100.0 36 .................................... TTGATAAAAAGTGATTGTTTACTTCTTGAAAACAAA C [1445] 1401 36 100.0 39 .................................... TTGTCAATCCTCGAAAATGCCGGGCGGACGGGCTTGCCA 1326 36 100.0 35 .................................... CCACCACCGACGGCGTCCACGCCAATTGCCTGCTT 1255 36 100.0 26 .................................... AACAATATAAACGACTACTTTACCGT 1193 36 94.4 0 ..T...................T............. | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 98.9 34 GTCCAAGAAAAAAGAAATGATACGAGGCATTAGCAC # Left flank : ATAGATAGTGATAGATGATTTTTATTTT # Right flank : GATGGGATGGGAGAGAGAGGACAGTTCTACTCTTGCTGTATCCAGCTTCTTTTACTTTATCCGGTATCATTTCTTCACTTCTTTCTGCACATAAAAAAGCACCTAACTATTTGGATAAGTTAAGTGCTTTTATTTCCGTTTGAAGTTGTCTATTGCTTTTTTCTTCATATCTTCAAATTTTTTCTGTTTCTCAGAGTCAACTTTACCAACTGTAATCCCTTTTCTTTTTGGCATTGGGGTATCTTTCCACCTTAGTGTGTTCATAAGGCTTATATTTATCACTCATTGTATTCCTCCAACACAATTATAATTTTTCCGTCATCCTCAATCCAACCGTCAACTGTGACAAAAGACGAATCTCTCTTATATAATACTTCTACTTCATTGTCATTAAATCCTTTCAAATCTACTCCGTTTTTTGTATTTATCATTCACGCTAAAAAAAGAAGGTGCATTGTCTAGTCCTTTCATCGTAGACAAGTACCCTCTTTCATAGGCTT # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAGAAAAAAGAAATGATACGAGGCATTAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 1950-331 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJGA01000070.1 Caldibacillus hisashii strain C4 NODE_70_length_12936_cov_39.6306, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1949 30 100.0 37 .............................. TTTCGTTGTCTCCCGGCAATAACTCGATAAAGTCGCC 1882 30 100.0 36 .............................. GCAAATAAACCCACAAAAACGTAAAGAATGGATAAA 1816 30 100.0 37 .............................. TGTCCGATCCGCAAAAAGACAAGAAAAACATGGGTTT 1749 30 100.0 39 .............................. CCACATTCTGCATTCCTCCGTTTCATAAATTAAGCGGGC 1680 30 100.0 34 .............................. TGTCGTAAAAGGAACATACAAAGGAAAACCGATT 1616 30 100.0 34 .............................. ATGCGGAAATCTATTTTAAAAAATGCACGTTTAT 1552 30 100.0 35 .............................. TGTAGTCTCCCAAGTCCAAAATTCTCTGTGCTTCC 1487 30 100.0 34 .............................. CCAAGAAAACAAAAATACTCAATTGGCTCCCGAT 1423 30 100.0 36 .............................. TACAAAGTAACAATTATAAATGACGGAGTTGAAACA 1357 30 100.0 36 .............................. ACTGAATATGCAAATGCTTTTATCAAGCAAATGTCA 1291 30 100.0 34 .............................. CTACAATAAAAATTATTACAATAAAAACTATCAT 1227 30 100.0 36 .............................. CCGATTTCGTCGCGAAATACACGGGACGGCGAGATC 1161 30 100.0 36 .............................. CACAGTGGACAATCGATGTCCACGTATTCGCTGATC 1095 30 100.0 35 .............................. CAGTACGTGCTGAACGGTTTTGACAATGCCGAAGC 1030 30 100.0 36 .............................. AAATGTGCTACTGCATACGCTCCGATAAACTTTCCT 964 30 100.0 38 .............................. CACTTTCTCTATTGTTTCCGATGTCATGTATGCACCCC 896 30 100.0 34 .............................. ATACCTTTCAAGGCTCCATACGTGACCGTCCTCA 832 30 100.0 37 .............................. TATCTTGTGACTCCATAACACCCATGTCGCATACTTC 765 30 100.0 39 .............................. TTGTCTGACACCAACCACACCTTCCCGGACTGCCGAACG 696 30 100.0 36 .............................. TATAAAAGATAAAAGATATAAGGCATAAACAAAGCC 630 30 100.0 39 .............................. CTGTGATCAAGTAAAAAAACATGGCGGGAAAGCCTACAA 561 30 100.0 37 .............................. TTGACGAGAAATGTCTCGGCGAATACTCGGCGACTCT 494 30 96.7 36 .....C........................ TGTCGCGGATGTCGGCTGCCATTTTCGACGATTCGG 428 30 96.7 39 .....C........................ GAGAATCCCAAGAGTGTTTAAAAAGCCTGATGGTGCCTG 359 29 83.3 0 .....C....C-.....A..A......... | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 99.1 36 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : AAAGTCAAAGAATAAATGGCAGTCATGGTGAAGTGGAAGATGAAGATAGAAAAATAGTTGACGATTTACAAGATTATCCGGAATTATTAAATATTTTGCATACTATGAAAGACAACCGAAATGATATAAATCATGCGGGTTGGAGAAATAACCCGCTTTCCTCGAAAGTACTGGAAGAACATTTTATAAGCATGTTTGAAACATATAAAACGCAATTGCTAAATTACTATGGTAAAAGATGAAATGCCATGTAGGTCGGTTTTGCTTTTTGGTTGAACTTTATTCTTTTTATGATTAGGCTGGCTGAAAATATTGTCGTCGACCTCAAGTAGTGCACAAATCCCGGGAGGTCGACGACAATTCGGTTTTTAAAATCATAAATAAAAATGCTGAATTGACGTGCATTATGAAAATATAATTGCTAAAAACCAATATTTCTATTATAATTAATGCAAAAGTAACAATACATAGAAACCTTATTAAATCAAGGACCTTTTGGG # Right flank : CTTGGGTGGAGTGATTAAGGGAATTTAAAGGAAGTAATAGAAAGCTAGAAAATTAATCAAAAAAGTAGTGTTTATATAATTGGAAACTTATTAATATTTTTTCTTTTTTATCGAAAAAGACCTGCCTTGGCTTTAGATATAATATGAAAGATAAGGAAAATAAAATCCTGATTTACGATGACTCCTGTACAGAACGAACAATAGCCATTATTGAAAAATCTTATTATCATGATTTAAAAATTGCTGAAATAGCTGTATTTTGCAATAGAAAAGTGCAGAGAAATGCAATTAAAAATGCAGAGGTTTGCCACCCATTTAATTCCTTTTCGAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 12910-12074 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJGA01000070.1 Caldibacillus hisashii strain C4 NODE_70_length_12936_cov_39.6306, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 12909 30 100.0 36 .............................. GTAGCCGTATGGAAGGCTTTGGCAAAATATGCGCAG G [12900] 12842 30 100.0 37 .............................. TTGGCGCTGTCAGTCGTGCTAAAGCCTGTCCGACCGT 12775 30 100.0 37 .............................. CCTCTTTCCATTCTCAATTAAAACCGATATTCTCAAT 12708 30 100.0 39 .............................. GCCCAACGTCATTAATTGACCAGGTCTCAGGATTAAACC 12639 30 100.0 39 .............................. ATTTTGGCGACCTTGTTACTTGCGCAGGCTATCCCGACC 12570 30 100.0 37 .............................. CTGTCACTTTTTGGACCAACGACGGCTATTTCCTTTC 12503 30 100.0 37 .............................. TGTTTTTATCAGCGACTCATTGTCGCTCGAAAACTAT 12436 30 100.0 36 .............................. TATCTTCCAAGCGTTCTTTATCAGTCATGTTGCACC 12370 30 100.0 37 .............................. TCCCTAACGGGGATGGTACTGTAGAGATCGTTGACCA 12303 30 100.0 38 .............................. ACTTTTTCTAAACGTTCTTTAACAGTCATCCTTCTCCC 12235 30 100.0 37 .............................. GCCATTGCATCCCAATCACGTTTCCAACCAAAATCAG 12168 30 100.0 35 .............................. TAGACATTTAGATCATCATTACCATTACCTTCCCG 12103 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 100.0 37 GTTCACATCTTACCTATGAGGAATTGAAAC # Left flank : GGTCGATGAAAGCGAGGCAGACTATG # Right flank : CAATCAAAGTAATCAAGGGGCTGTCTAAAAGGTCAAAATTAATGACTTTTTGGACAGCTCCTATTTTTGGATTCATCAGCCAGCCCCTTGATTTAAAACAATGTTTCAGCATTTTTTTAATGAAAGAATTTAGTATAAAAAATAACATGTAATTAAAAAATTTTTATAAACAGGCAGGAAATTTATCGTTTTTTGTCGAATAATAGTAAAAGTGACAGTTTTTATCTAGTAATCATAACTTTTTCCATTTTTAACAGACGGGAATTTATTTTTACTATACCGAAACAGTATCGTAAGCGTTACTGCAGATAAAGACTCCCCTCAAGATTCGGATCAACGAAAGGAAAAGATGAAATGTGGTCTTCCTGCATATGTCAATTGGTTCGGAGGGCAAAATGTTAAAAGCGCTGTCATATGAACATGGCTCATATAGCTTGTGTTCTTTCTATAAATCAGTAGGGATGAAGATCCCTTTGATAGAAGTTTCATTTATTATTATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //