Array 1 12851-13022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKYY010000056.1 Acidithiobacillus sp. HP-11 Contig_58_consensus_sequence, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 12851 29 100.0 43 ............................. TCGCTAATACCGCGCTCAATGCCGCTGGCGCATCAGTTTCAAT 12923 29 100.0 42 ............................. ACCCTACTCAACCGCCCAAGGAGGGCTAAACGATGTTTCAAT 12994 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================== ================== 3 29 100.0 43 CCACGCCCGGTTTATAAGCCGGGCGATAC # Left flank : GATCCATTACCGGAATGAGCACGGTGCAAAGTTGTTCACGGATACCGGCCCACGGATTGAAATCCATGACCGGGCAGAGTCGTCGGTGGAAGCCGCTCTGCGTATCGCCGCGCAGAAGTATGGTGCGCTAGACATCACAGGCAGCGCCGTCTTTCGTGAGCAGGCCGCACGGCAGGCAGCCCGCCTGGGTATTCAGGTCAGGGACAAAGATCTGCAACAATTCTGGCAACAGGAACGACTAGCGATGCAGCCGAAACCTTGCCAGGAACAGGCACCACGACCGCCCCGGCAAGAGCAAAAACAGCATCCCGTGCCCGTGCCCGCGCCAACCATTTTAGATGTTCGGCCAGAAACGAAACCCGCTCAGACGATCCCTGAAGCATCGAAAAAGCAGGCACTCGTCCGCAAGCCACGCCGCCGCGATACAGATATGGAACGTTAGCCGAGTGAGCGACCATAAACAGGTCCTCGATGGCCATTATATGGGTGTATGGAGATGC # Right flank : CGAATGACATAGATCACCCTGTCCATTTTATGTTCGCGGGCATGGTGCAAGGCGAATCGCAGGCTTGCCAACGTCTTGCCGCCACCGGTCGGCACGGTCAGAGTGTAAATGCCTTGTGTGCGGGATGCACCAGCCAGACAATGGTGCGAAATATCCTGCCGCAGTGCGTCGATAGGATGACGTGCCGTGAAGGCGCTCAAGTGGCTTTCCAAACGCTGGATCAACACCTCCCAGGACTCGTAATTGCCGTGCAACCGCCGCCGCGCAAGACCGGGATGCTCAAAATCGGCGGAGTCGATGCGGTCGGCGTCAATCAGACAACTGAAGAGTGAGCGAACAAGCAGGCCCAGTTGCTGCTGGTAAACCGGGCTTTGCGGGTTGTTGCCCGGAATTTTGCCGAGGATATTTGCGATCCATGCCTGAAATGCCTGTGTTATTTCCGGGCGTGCCACCAAATTCTGTACGGTTGCAAGCAGTTCTTGATTTACCTTGCCCAAGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCACGCCCGGTTTATAAGCCGGGCGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 2489-2171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACKYY010000072.1 Acidithiobacillus sp. HP-11 Contig_73_consensus_sequence, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 2488 37 100.0 33 ..................................... GGCTACGTAGCTCTGGGCTACTCCGGCAGCTAT 2418 37 100.0 33 ..................................... ACAGCTCGGCTGTCGTTAGCGCCGATCCTTGAA 2348 37 100.0 33 ..................................... TACTACTACTATGCCGATAACTCGGTTAACTTG 2278 37 100.0 34 ..................................... CACCGATGATGCCGACGACGCCCTCGCGGGCTCG 2207 37 86.5 0 ...............................GGTTC. | ========== ====== ====== ====== ===================================== ================================== ================== 5 37 97.3 34 GTCTGAATGGTTTCCCTGATGAATAAGGGATTAAGAC # Left flank : CCCGCCCACAACAGCAGCAAGACCATCTGCTGCAAAGCCCAACCGTACCAGCGCCGTGGAGCGATGCAAGAAGGCAAACGGGAACAGGTATGCCCGCAGCCGCAGCAAAAGTAACGGGGAATCGGAACGGGATTCTCCTGCCCAGAAGTCGTCCGATCGGCCTTGCGGGTGTAATGACCATGCTGCCAGGGATGGCCTAGACCACAGTGCGGGCATTGGATGGGGCGATAGCGCTCAGGAGCTCTGGCCAGGGTGTCACTGTGATTCTTCAGGGTGGGGATATCAGCTACAATCCGATACAAGGGCGGACCTCCTATGGGTTTGGTTATCGTGAAAGCCTAATTCACTTCCCACGATAACAAAGGAGATTCCGCCCTTTCTACATCCTCTGCGTCCCACCCTCTACAAGAAGCCGTTCTCCAAATCCATCCGAATGACCGTGGGATAAAACGTCGTCCTCCTACTCAAATATCGAAAGACGTAACACCCGGTGTTGTCAT # Right flank : TCGCTGTTTTAAGTGGGTAGCTTGAGATCCAGCTTACCCAGTACGAGGTAAGCCATGTTAATAAAATTCTTGTGGGTGCGATAGCCCCGTGCCCCACGGTAAATTTGTTCTCAGGCCCCCAGCGGGGTTGGTGCCGAATTTTTAGTCATTCGCAGATAATCGAAGACGATGCGATTACGGAAACAGAGGATGCGCATCATTTCAGCGATGGACTGGGCAGAATTCTGGAATGATTTGAGAATGCCGACTGCGAAGCGGCGCAAGCGCGTTAGATTTTCCGGGCCAAAGCCGGTACGGGCACGGCCACGGTCCTCATCGAAGTTCCAGTCGATGATGTAATGCACGCTCTCAATGGCCCAGTGTCCGCGATTAACCTCCAGTACGCGTTGCGGTGACGCCTCTTGCGGAGTGCGACTGGTGATCCCCAGAGCGACCTCCAGTGAACACTTGCCGGTTTTCTTGTAGACACATTCGCGTTCTATTCGGAAAGCCTGGCCGAC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATGGTTTCCCTGATGAATAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //