Array 1 9942-11925 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQQ01000005.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP26b x_contig000005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9942 30 100.0 36 .............................. TGATGATAGTAGATAAACTTCCTACTCAAAGAAAAC 10008 30 100.0 34 .............................. AAGGCTTTAGAAGACGCAAGGGCAAAAAGAGAAG 10072 30 100.0 34 .............................. TTTGAAGACTATCAGAGCTACAAAACCGTTTCAA 10136 30 100.0 38 .............................. AATAAGCTAATGCTTTGAAAGCCAAAACACCCAACTCC 10204 30 100.0 38 .............................. AAAACTCTTTAAAAGATATTTTAGGAAGAGTGCTTAGG 10272 30 100.0 37 .............................. TTATCATACTCTCTGAAAGTCATATCTATGAACTCTC 10339 30 100.0 34 .............................. CCAAAGCACAAACTAGCTAGATTTTGCTTAGATT 10403 30 100.0 36 .............................. AAATGCCTGTACTGTAGTTTGTGCTAAGTGCACTTT 10469 30 96.7 34 A............................. CTGCTTTGCAAATAGAGCTTGGAAATAAATCTGG 10533 30 96.7 33 A............................. AGGCTAATGGTGGAACAGAAGTAAAAGTTATGC 10596 30 96.7 37 A............................. TAGGTGTTTTGGTAGTTTTCATCATCTACTTTGTGTA 10663 30 96.7 34 A............................. CACATAAGGCCAGCAAGCTATTAGCCTTCTACTT 10727 30 96.7 36 A............................. TAGCTCGATTCGCCAAGGTACGACAAGCGAACGACG 10793 30 96.7 35 A............................. GCAATAAATCCGATCCTAGAGCTTGAAAACTATCA 10858 30 100.0 36 .............................. CTGATGGCAAAGGTCACTTTGCGTATCTACTTGAGG 10924 30 100.0 33 .............................. TTCACACCAAAAAGCAATGAGACGATTTACGCT 10987 30 100.0 34 .............................. ATAGAAAGGATGTAATATGGCTGGATGTCGTGGT 11051 30 100.0 33 .............................. AGGCTAAATAATGAAAATCTAAGCACTAATTTA 11114 30 100.0 37 .............................. TTTATCGAGTTAAAAAGAGCTAAAAAATCATTAAGCA 11181 30 100.0 34 .............................. AATCCTATGTATTGCATAAGTTCAACATCATCAA 11245 30 100.0 35 .............................. TTAAACTGTGTTTTTGGTGCTTTTAGCTCAATTTG 11310 30 100.0 34 .............................. ATGATAAATCTATTTCATTGCCAAAAATATTTGA 11374 30 96.7 37 ............................G. AATCACAAGCACAAATAGCTTGGGCTGAGAGCTGGAT 11441 30 100.0 35 .............................. ACATTAACTGATGCCATCTCAGCTAAAACTGGTGT 11506 30 100.0 34 .............................. TTTGAGAATAAAGATTTTGGAAATATAAGAGTTT 11570 30 100.0 34 .............................. CCTTCGCTTATTGTTTGGTTGTCATTGATATCAG 11634 30 100.0 35 .............................. TTTGCACATTCTCATCAGTGCTTGGGGTAGGATTT 11699 30 100.0 36 .............................. CACGCTCAAAAAATTCATCAAATATCTTGTTGTTGC 11765 30 100.0 36 .............................. TAAACTACACTAGCCATTCTTTCATTTGCTACGTGG 11831 30 100.0 35 .............................. GCTTTTTGTCTAAAAACATTTTCTAAATCCGCTTG 11896 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 31 30 99.3 35 GTATAAATTTATCCTTTTAGGATTTGAAAC # Left flank : TCTGCTCAGACAAGGGGTGATAAAACTGCATTTAACATACTTAAATATGCAAAAAACGACCAAAATATAGCCATAACTCAAAATGAATACTGGATAAAAAAGCATAGAAAGATAGATGAAAAAGTATTTTTAAGAAAAGATGTAAAATCCAAAGCAAACTGCGTGGCTTGTCATAAAAAAATAGAAAACGGTATAATCGGCTTGATAGACTATGAAAAAATAAAATAATTTACAAGTGTTTAGCGAGTTTAAAATTTGCCTTATAGCTATTTTTATTTTGATTTAATATGGTTAAGTTAGATTTATTTATGGATCAACTTTTGCCTAAATACTTAAGAAAAAATTGCTTTAAATAACTTGATAAAGCTATATTTAAGATTTATAAAATAGCTTAAATGCTTTATTTGATGATTTTATAAATACTATATTAAGCCATTTTTTAGTAAAATAAATATCGTAAAACTTGGTACAAAATACTAAATTTAGCTGTTTTTGTTGCT # Right flank : CTAGGGCTATATTTTGCGTATAGTTTTACCATAATTTTTATAGCTAAATTTAATCGGTTTTAATAGTGCTTTAAAATCTTTGATTTTATATAAAATAAGCAAATAATAATTGCAAAAAAGCCGATTGATTTAATTCACACCAAGGACTAAATTTGATACTTTGTGATACAAATTACCCTAGTATTTTAGATGATATATGCGATGAGCTTACTAAAGCAGAGATTGAGCTTGTATTTGTTAGTAGTGATGAAATGCAAGAGATAAATAAAAAAGAGAGAAATATAGATAAAACTACAGATGTGCTTAGCTTTCCACTTGAGTATGTACCTCATTTCCCTATTGGATCTATTGTTATAAACAGTGATTTAGCTAGTTCAAAATCAAAAGAGCTAGGTCATAAAGTAGAAGATGAGATAGCTTTATTATTTACTCACGGACTGCTTCACGTATTAGGATTTGATCACGAGAATGATGATGGAGAGATGAGAAGAAGAGAGATA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAAATTTATCCTTTTAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 8306-10690 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIQQ01000011.1 Campylobacter hyointestinalis subsp. hyointestinalis strain VP26b x_contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8306 30 100.0 34 .............................. ATCTTATTTTTATCCTTTTTATTCAAATTCTTTA 8370 30 100.0 34 .............................. CCATTATTATAATTATGTGATATCTCTTTGTACT 8434 30 100.0 35 .............................. TCAAGAATGGACAACTTGGAGCTTAGAAAACTTCA 8499 30 100.0 37 .............................. AGAGACGATGAAGACTATAAGACAAATAGAGATTATC 8566 30 96.7 35 ........C..................... CTTTGCTTCAATAGACAGCTCATCCCTAATATCAG 8631 30 100.0 34 .............................. ATATAGCAAATGATATTAAATCAAAATGTACAAA 8695 30 100.0 36 .............................. AGGATCGTCTTCATCTTGCTCTTCTAATGCTTCTTC 8761 30 96.7 35 A............................. CATATAGAGTTTTCTAAAAGTTGTTTAAAAAACAG 8826 30 100.0 33 .............................. CTTTTGGTCTTACAACTATCGCACCCATTGCCA 8889 30 100.0 35 .............................. ATCACTTAGGTTTAGTCCGGTTTGAAGAGTAGCTA 8954 30 100.0 36 .............................. TTTGTTCCTTTGGAATAAAATCAATTAAAGTCTTCA 9020 30 100.0 36 .............................. CAAGCCCCTCATTATTGCCCTTATATTCGCCTTTTT 9086 30 100.0 33 .............................. CGTAGCCGTATTTTTCATGAGCAACGCTAGGGA 9149 30 100.0 36 .............................. CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAGAA 9215 30 100.0 36 .............................. ACAATGAAGACGAAGTTAAAAACTTCGTAGAAATGG 9281 30 100.0 37 .............................. ATCAACTCGCAAAAGCTCGTTAAAATTCTCATTTTTG 9348 30 100.0 34 .............................. AAGGAATACCCTTATATACAGTCTTTTTATAGAC 9412 30 100.0 36 .............................. CGTAGTAGTCTGCTTTGTCGATGAAAAGGCTTAGAA 9478 30 100.0 34 .............................. TATGGGCGCTTGACGTTGCAAGGTATGGCGATGA 9542 30 100.0 35 .............................. AAAGCAATAGCAGAAGCTAGGGAAGAGTTCGCTAC 9607 30 100.0 37 .............................. TCTAAATTTTGGCAACATTCATAAGAAACTCCTTACA 9674 30 100.0 36 .............................. TTTCACGTCTTTTAACACTAGTGCCACTTTCAAACA 9740 30 100.0 35 .............................. TAAAGGTAGCCCACTGAAGGAGTGTGAGCTTAAGA 9805 30 100.0 35 .............................. TGTTATCAGCGTCTCTTGTCTCACGCAACCTTGCA 9870 30 100.0 35 .............................. ACCGCCAAGCCCAAGCATAGCACTAGCAGTAGCTA 9935 30 100.0 35 .............................. AAAAAACAACTACTAGACCACGGACAAATCAGCCG 10000 30 100.0 36 .............................. TAGCTTTAGCTATTTCTGTTTGAGTTCTAGCTTGTT 10066 30 100.0 37 .............................. AGAGACGATGAAGACTATAAGACAAATAGAGATTATC 10133 30 100.0 37 .............................. ATTATTTTGAAAAATGCTAGTCTTTGGGATAACTCAA 10200 30 100.0 38 .............................. GCTTTTTTCAAGACAGATAAAATAGCACTTGTGGATTA 10268 30 100.0 36 .............................. TGAGCTGAAAAAATACCTTTGCAAGTTTGGCAAAGA 10334 30 100.0 38 .............................. GCTTTTTTCAAGACAGATAAAATAGCACTTGTGGATTA 10402 30 100.0 36 .............................. AGAGCAAATCAAGCTGGTCGATTGGCTCAGGGTGAA 10468 30 100.0 33 .............................. TATAAATTTATCTTGCCTTTGCATCCAAATCAT 10531 30 100.0 36 .............................. GTTTTTAAGAGATGAGTTAATACAAGAAGATAAAGC 10597 30 100.0 34 .............................. AATCTAAGCAAAATCTAGCTAGTTTGTGCTTTGG 10661 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 37 30 99.8 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GAGCTATTAGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCTATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGTATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGGCAGTTAAGTCTCATTAAAATAATAACCAAAATAAAAAGAATAAAACTAAACATCTACAAGCCTTTTTTAAAAAGTATAACATAAAGGATTAAATATGGCAAATCCTACTCTAACCTTTGGAGTTGATTTAAGTGAGTTTAATAGTGCTTTTAATAAAATCAACAAAACAGCCACTACTCTAAGTGATGCCTTAGACAAAAATATCAAAACAGCTACAACAGCGATAAAAAAACGCAAATCATAAAAA # Right flank : GAGAGTTCATAGATATGACTTTCAGAGAGTATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //