Array 1 24509-24341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMHU01000008.1 Ligilactobacillus animalis strain 381-IL-28 NODE_8_length_231465_cov_20.032148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24508 36 100.0 30 .................................... AAACGTCGGGATCGCTTGGTCAAATACATC 24442 36 100.0 30 .................................... GATGACAGAGACCAAAGCAAACTTGTACAA 24376 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Left flank : ATATTCGTCTAATTCCATTGTTTTGATCCGGTCAAGTGGCCATTCTTTCAAAAATTCTTTTGCCAACTGCATATTTTGTTTCTTCCATGCCTCTGCTCGTTTTAACAGTGCTGATTTATTTTCAAAATACCAATCCGAAAAGTGTTTTATATCGATTTTTACCATCCTGTCACCCCATCGTTTTTATATAGCATACAATAAGCTTAGTAGCCGATGCACCTAAAACGCATATAAATTTAGACAAAAAAGTTCCATTAGAAAATTTTTCTAATTTCTTAAAAAGCATCTCAATAGTTAGATAGTGACTCTAACAATTAAGATGCTTCATATTAATCTAGTACTGAAAATTTTAGACAGTTATATTTTGGCTTAACGTAGTGTATAATTATAATTGAATTATGTATTACGTTAATGAAAAAACATGGAATCATACAAAACTGAAATCTTGCTAGGATAAGTAGCGCGATTACGAAACCAAAACGACATTTTTTTGCATTTGA # Right flank : AAGCGAAGAGATTGGCGAAGAGCGTCAATAGTTTTTTTGCATGACTCCATAAATGAGTTAGTGCACTAGAACATACTGAATTATTTTAGAACTATTATTTAACGGCTTGATTCTTTTAGCAGAATCAAGTTGTTTTTTGTGTAATCACAAAAATAATATGATGGTGTTTTGAAAAATCTTATGTTGTATCCTACAAATAAAAACTAGCATGTTGACCTCTGTAATACTTGATAGACAGCAAAAAAGCGCCTAATCAATAGGCGCTACGTACTTACCTGTTAGCACACTTCCATTTTTCCAATCCTTTAAATACCAGGACAACACTTGCAATCACTAACAAACTAACTAAAATATTAACGACTAAGTTCACTTCAGCAGAAGGCATCAACTTAGCAATAAACAAACTATAAAAATACTGCGTGATAAAAATAGCAACTACAATGGCAATACTCATTTTATCTTTCATGTTCAGGAGCCTCCTTGTGATCACAAAGACAGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 33957-34784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMHU01000008.1 Ligilactobacillus animalis strain 381-IL-28 NODE_8_length_231465_cov_20.032148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 33957 36 100.0 30 .................................... TGCTCAGTTTTTGGCGCGCGTTCTTCGTCT 34023 36 100.0 30 .................................... TGAAGATCGTGTACTCTATGAAGTGCTTGA 34089 36 100.0 30 .................................... CAATATGAACGCAGTTTTGCCAACAAAGCA 34155 36 100.0 30 .................................... TTCAGCTTTATCAACCAGCACCATGTTTTC 34221 36 100.0 30 .................................... CAAAAGCAAGTGAATTGGTACGTTGACAAA 34287 36 100.0 30 .................................... CGATCCACGCCCACCTTTCGCAATGATATA 34353 36 100.0 31 .................................... CTGCAACTAAAAACTTTGGTGAAACGCTTGA 34420 36 100.0 30 .................................... AATAGCGGTGGCACAAGAAGAGAAAAGACA 34486 36 100.0 29 .................................... TTAGCTGTTTGCGGTTTGATAGGCGTGTT 34551 36 100.0 30 .................................... GCCAGTCACAAAACCTGACGCAGTGCATCA 34617 36 100.0 30 .................................... CATATAGCATGATAGTCGCATTAGCTACGA 34683 36 97.2 30 ..............................C..... ATCGAATTTATGAATAGTTACGGCGATAAG 34749 36 83.3 0 ........................AA...T..GT.T | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 98.5 30 GTTTTAGAGCTATGTTGTTTTGTATGACTCTAAAAC # Left flank : TGCGGATCTGGAAAGACAATTTGGTGAAAAAGAGGAAGTTAAAGCCAGACTTGAGTTATTAGCAGTGGAGATAGCAAATATTATTTCGAGTGAATGTTTAGAAAATGAGTTAGATCTTGAGTATGATGAGATCACACTGCTAGAATTGATAAAGGCGATGGGTGTAAAAATCGAAACGACGATGTCATCGGTTTACGAAAAATGTTATGAGATAGTGCAAATTTTCAAATACTTAAGTAAGAAAAAATTATTAGTTTTCTTAAATGTTGGTGCTTATTTGACAGAAAAACAAATAAGAAGCTTACTTGAGTACATTGAACTGTGCAATTTGAATGTCATATTCCTTGAGCCAAGTAAGTTGTATGACTTACCGCAGTATATTTTAGATAGTGATTATTATTTAGAGTATTTGAATAGCTCTTCGGAGTCATAGAAAGCGAAAATTTTGCTAGAATTAGTAGCGCGATTACGAAACCACTGTGCCATTTTTTGCATTTGAG # Right flank : TTTTCCGGTTGAGAATATGTGCAATTGAAAAATATTTTTACAGTATTTCTATTGACGTCAACTTTATAATTTGATATTATATTAGCGTTGTATTTGTGCATGCCACAACTGCAACCGCACGTTTTAAGTTCAAGTGCTCTCTGAGCCACTACATTACGGCGAGTCTAAGTAAAATACAAGGAGGTGCACATTAATGTACGCAATTATTGAAACAGGTGGTAAGCAACTTAAAGTAGAAGCTGGTCAAGCTATCTACGTTGAAAAGTTGGCTGCTGAAGCTGGTGAAAAAGTAACTTTTGATAAAGTTGTTTTAGTAGGCGGCGAAAACACAGTGATCGGTACACCTTTTGTTGAAGGTGCTACTGTTGAAGGTACTGTTGAAAAGCAAGGTCGTGCTAAGAAAGTTGTTACTTTCAAGTACAAGCCTAAGAAGCATCAACACACAAAGCAAGGTCACCGTCAACCATACACAAAGGTTGTTATCGACGCAATCAACGCAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGTATGACTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //