Array 1 208173-208787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTQ01000001.1 Bifidobacterium porcinum DSM 17755 contig1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 208173 36 100.0 37 .................................... TCATATACTCGTTAGCAGACATGCCAGCGTTAGCATA 208246 36 100.0 35 .................................... GCAAGCAAACATCGTCTACTTGCAGCGCGGCAACC 208317 36 100.0 35 .................................... GGGTAGTCGAGGTCGGCGGCGGCCTTGTCGGCCCG 208388 36 100.0 36 .................................... CTGACACGCGAGACCGCCAGCCTCGGCGGCGGCTTC 208460 36 100.0 37 .................................... ATCATTTTCCATGGTGTGAACCCGCGCAACGGCACCC 208533 36 100.0 37 .................................... TGACACCGAATGAAGTTCGAACCGCCCCACTGCATGC 208606 36 100.0 38 .................................... TGGTGAGCGTCGCCGTTTTCCCCGGTTTCAATCTTGCG 208680 36 100.0 36 .................................... CGGCCCAACAAGGAAGGAGCACTCATGACATTGGTG 208752 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 100.0 36 TTTGCCGGGATTCATTTCCCGGCACTTCATTGAGGG # Left flank : CCGTCTTCTCCAAATCAGAAAGAGAGTGGAGAGCGAAATGGACTGCAGGGAGGATTCCGTGCTCGTGGTGAACCTGGGGAGGGTAGAACAGGCAGATGATGCAATGGAATTTGTAGGAAGGCGTTCGCTTCGCGACGTGGAAATACCTACTGTTATTTGAATCATCTGAGATTGCTTTTGCCTTGAAAGGAAGGGCTCTGGGGCGGCCTGATTACTGTAACGGTCCATGTTGCTTCGCTAAAGCACGTTTTGACCTTGAGCAGGATGCTCGCGTTGTTTGAAAATTGAAGAGTGATGGCAATTTATTCCTAGCGAGAGCTGAATCGCCTGGTATTTTCTCGAGGAGCGCTCGCAGTGAGGTTTCTTGGTGCGAGCGCTCCATTTTCGATGTCCTTTTCTGCGTTCGTGTCCTGTATTATTCGCGAAAACGGATGAGATATATTGGACCTCTCGCACTTTTCGATAGCTGCCCTGCTGATAGTGTGTGTTAGAATGTGGCC # Right flank : AAAACCAACACGCCGGTGAATCACCTCATTGGCTTGTTTGCCGGGATTCATTTCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGCCGGGATTCATTTCCCGGCACTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 32-499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTQ01000002.1 Bifidobacterium porcinum DSM 17755 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 32 37 100.0 35 ..................................... AAAACCAACACGCCGGTGAATCACCTCATTGGCTT 104 37 100.0 35 ..................................... GTGTACGGACACGGAACAATCAAAGGAGAAACATG 176 37 100.0 35 ..................................... TGGCCCAACAAGGAAGGAGCACTCATGACATTGGT 248 37 100.0 35 ..................................... AAAACCAACACGCCGGTGAATCACCTCATTGGCTT 320 37 100.0 35 ..................................... GTGTACGGACACGGAACAATCAAAGGAGAAACATG 392 37 100.0 34 ..................................... TGACCGTGCTCGCGGTGTCATTAAGCGCCGCTTG 463 37 97.3 0 C.................................... | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 99.6 35 GTTTGCCGGGATTCATTTCCCGGCACTTCATTGAGGG # Left flank : CCAACAAGGAAGGAGCACTCATGACATTGGTG # Right flank : TACCTGCCGCAGGTCGTGTTCTACGCTGCTGTCACTTTGCCGGGATTCATTTCC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCGGGATTCATTTCCCGGCACTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 7230-8335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTQ01000025.1 Bifidobacterium porcinum DSM 17755 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 7230 33 100.0 34 ................................. TGCCGGACACCCTCACTACCAGCAAGCCGACTTT 7297 33 100.0 33 ................................. ACATATTGGAAAGTTCATGAGTTGTATGTACGT 7363 33 100.0 33 ................................. GATGCTGATAGGGTGTCCTGAGTCGGCCATTTG 7429 33 100.0 33 ................................. ATGGATTGCCAGTCCCGCCGTTCCGTGGCGTTG 7495 33 100.0 34 ................................. GCCTTAACATTTGCGAGTACGACTTCCGCGCCAG 7562 33 100.0 34 ................................. ACCTATTCGGGCGGTGTATTCAGTTTGTATCAGT 7629 33 100.0 34 ................................. ATGACAGCCGAACACGTCGTTGACGGACGGCTCA 7696 33 100.0 36 ................................. CGAGAAGCTCACCAATATGGTTATAGCCACCACCAC 7765 33 100.0 35 ................................. ACGATACGGTATCCCGGCAATGTCATTATCGACAG 7833 33 100.0 34 ................................. AAGCTTTGTAACGTGCCGTGGGACATGGGATACA 7900 33 100.0 34 ................................. TGCTTCTCGGCATCATAGCTCGCGACAAGCTCCT 7967 33 97.0 33 ........T........................ GCCTTGATAATCTCCTTGGTATCAAAAGCGAAA 8033 33 100.0 34 ................................. TCGCATCGACGTGTTAGACCAGCGCTTGCATGCG 8100 33 100.0 34 ................................. ATCATCGACGACCAGATGGCCGACGACAGGCGCA 8167 33 100.0 35 ................................. GAGTTTGGCGAGCTCGTATCTGACGGCCTCGCTAT 8235 33 97.0 35 ....................T............ AACGGGGTAGTACTGAAATACTGCATGGCGCGGTG 8303 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 99.6 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : GCTTGTCGAACAACCCAAGATTGCGTCGCACGTAGGAAAGCGCGTCCTGGAACCACGGATCGCCCTCGTTGTAGGCGGTGGTGGTGGCGATCGCACCGATCGTGGCGGTCTGATGCTCGCTCCACTCCGCACGTTCCGCCCACATCTCACGGTCCGCCGGATTCGTCAGCAGCACCTGCGCGCACTTCGTACCCGGAATGTTGAACGACTTCGACGCGCTGGTAGCGGTCATAGACTGCCGCGCGGCCGCCTCGCTGATGGTCGGATACGGAATATGACGCCCCTCGAACACGAACGGCGCGTGAATCTCATCATTGAAAATACGCACGTCGTACCGTTCCGCCAGCTCGCACAGCCGCTGCTCCTCGGCCAACGTAAGCACCTTGCCGATTGGATTGTGCGGATTGCACAGCACGAACGCATGGCAGCCAGCCGCGAACGCGCGTTCGATGGCGTCGAAATCGAACACCATCAACGGCCAGCTGTTCCTGACGGATATC # Right flank : TCGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCGGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCGCCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGACCATGCTTCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33-1588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTQ01000003.1 Bifidobacterium porcinum DSM 17755 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 33 35 100.0 36 ................................... TACCTGCCGCAGGTCGTGTTCTACGCTGCTGTCACT 104 35 100.0 36 ................................... CAAGGCATGGCAGTTGTCCAAGGTGAACGTCACGGT 175 35 100.0 40 ................................... AGGGCCACCAAGGGCCGCAGGGCCATCACGTGGAGCCGTT 250 35 100.0 38 ................................... TCAACGAATTGGGTGCTGAAACGCAGAAAATGCTGGGT 323 35 100.0 38 ................................... AGCGTGCATCCGGTGGATTGTCCCTCACTGGTCGCACT 396 35 100.0 35 ................................... GTGCCCTCAATGCCAAGAGAAGGAACAGTAATGAT 466 35 100.0 39 ................................... GAGGATCTGGACGGTTTGACGGGCGGATTCCTTCCCGGT 540 35 100.0 37 ................................... TTGCTGGTGTCTTTGAGGATGATGCGTTTCACTGGTT 612 35 97.1 37 ..........C........................ GGGGCTAAGCGTTGAAAACGGCTACACTGTTAGCGTT 684 35 100.0 39 ................................... ACGACCAATGGGTTAGGGCTCGTGTTCAGCACGGGGATT 758 35 100.0 38 ................................... ACGACTGTGCCGCGCCGTCCACCGTGCAAGTGTTCGAT 831 35 97.1 37 ..............C.................... GTCAACCTCATCAAAGAGGCGGCGATCTACCGGTACA 903 35 100.0 37 ................................... GAGTGACCGCCTGCCAGACCTGCCGGTGGGACGGCGA 975 35 97.1 38 ..............C.................... TTCCAATGATAACCGCCACTAGTCTTCGCTTTGCCATA 1048 35 97.1 38 ..............C.................... ACGCCAACGCTCTTGCCACTCGCCGTAGCTCGTTCGAA 1121 35 100.0 37 ................................... TCTGTGATCGTCGCACCCTTCCGCCCGGTCGCCACGA 1193 35 100.0 37 ................................... AGCTCAGAGGGTGTGCTCGCCGGGTACGCGGGTCGTA 1265 35 97.1 36 ..............C.................... CTCAGGGAGCCGGGACACTGGGAAGCAAAACTCGCA 1336 35 97.1 40 ..............C.................... AAGGCAGTCGAGGATTTTATCATGGGCATTGAGGATAAGA 1411 35 100.0 37 ................................... GCTCTGCAATGCTCCACATGCTCTGCACGCCAACGCA 1483 35 100.0 36 ................................... CGGCTGCGCAAGGACATCGAGAATCACCTGATCCCA 1554 35 88.6 0 ............G.................A.A.A | ========== ====== ====== ====== =================================== ======================================== ================== 22 35 98.7 37 TTGCCGGGATTCATTTCCCGGCACTTCATTGAGGG # Left flank : CGTGCTCGCGGTGTCATTAAGCGCCGCTTGCTT # Right flank : ATCATACCGATAAACATGCAGTCCTAGGCGAGTACTATCACCAGAATTCATTACAACCTCTTTCATCACACCCGTCTCTGGCTTTACGTCTTACCTCTCACCCTCACCGCACCACCACCGCACCGCCATCTCACCACCACGCCCGCTTCAACCTTCCAACCGCAGTAATCCAAGATGGCTCGCTCCCGCTGTGATAGCCCAGCAATCGCATCATTGGACACCACAATATGTCTGCCATCGCCGAGCAGCTGCGCGTTTTTCCATGGCAATCCAGCGGTACCGTCGGCCGGGTTCATCCCAGTTGCCAGGCTTATCACGCCAGCCCGATTGTTCATCTCAATCTTGTCAGAGGGATAATCCACTCCGGAATCGTCATGATTCGGAAGAATCCCCATGCCGCTGACCACCATGCCGACTGGCAGATCTGTGACATCGACGAAACCGGTGACCGCACGCAGTCGCGGATTGAATACACGTCATCCGGCACGTGTACAAGGATA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCCGGGATTCATTTCCCGGCACTTCATTGAGGG # Alternate repeat : TTGCCGGGATTCATCTCCCGGCACTTCATTGAGGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //