Array 1 1413639-1414027 **** Predicted by CRISPRDetect 2.4 *** >NC_021036.1 Taylorella equigenitalis 14/56, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1413639 29 100.0 31 ............................. GAGGTAAAAAATAAATATGAGTATGCATATG 1413699 29 96.6 31 ............................C AAGAGTTCCTCCACTTGCCCAGTTAGCACTT 1413759 29 96.6 31 .........T................... TATGGCGTATCAATTGTGTGCCACATTACAA 1413819 29 100.0 31 ............................. TATCGCTCATCACATAAGGGCATCCAGTAGA 1413879 29 96.6 31 ...........C................. GAAGAATATTTTGAAGCAATGCGAAGTGGTT 1413939 29 96.6 31 ...........C................. AATATGCCTAACACAGCCTAGTAATTACAGA 1413999 29 93.1 0 ...........C................T | ========== ====== ====== ====== ============================= =============================== ================== 7 29 97.1 31 GTTAACTACCGTATAGGTAGTTTAGAAAA # Left flank : GTACTGCAAAAAAGTCTCCTGGTTTCCTACGTTGCCTTTTTTTCTCAATCATCTTAATAACTCTCCGAATATTTCAATCGCAGCATTTAGGTACTTAGCTCTCTTAGAATTATTTTTAGATATTCCATTAATTGCATTACCCGAGGTACCCCCTTGTGATTTAGCTTTTCCATTATATTCAATTAAATGTTGCTCTCTGCCACGAATAGCTTCTTTATTGCAGGAACACTTATCAAGTTCAGCAGGACCAAAACCTTGTTTATTCATATGATGTCCCTTATCTCTTCTACGCATAACCTGTTCTGGATCACCGTATCCACTAGTTCTTCCAGAATAAATTTCACCTGTCGCTTCATTTAGTTTCGTGTATGTTACATATATTTTTGTAGGTTTATTCTCCCATCCCAAAGGATCCACCCATTCCACAGGGTTAGGAGCATATTGATAGTTATTCAACCCTCCCCACAATTAACCAAGATTATATCGAGCCGATAGGAGTT # Right flank : TCCTAATTAGTTTATCACCCCCCTCCAAACATTTAAAATCAGTAAAGCCACGTATACAAGGCACAATACAATCCCAAGGCACAAAACCAATCACACCTCTATCATTACTACACCCTTCAGTTACAATATCTCACAAATTTATTCAAATAAAAATAAAAACAGGAGCTACATCTTGATATCAGCACTGATCATAGCCGCTATTGTCGTTTCTATAGCTATAGGTTATATCTTCAAAATAAATATAGGTCTTCTTGCAATATCATTTGCTTACATAATTGGCACATTCATACTTGATTTAAAACCATCTCAAATCGTAGCACTGTGGCCCTTGAAATTATTTTTCGTAATCATGGCTGTATCGCTTTTTTATAATTTTGCGACAGTAAATGGCACACTAGAAAAGCTAGCAGATAACTTGATATACAGGTCCAAGAATTATCCTTATCTTCTGACATTCGCCGTGTTTGTAGCCTCTACTCTAATAGCAGCTATGGGTGCGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTACCGTATAGGTAGTTTAGAAAA # Alternate repeat : GTTAACTACCGCATAGGTAGTTTAGAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTAACTACCGTATAGGTAGTTTAGAAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1544249-1543920 **** Predicted by CRISPRDetect 2.4 *** >NC_021036.1 Taylorella equigenitalis 14/56, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1544248 29 96.6 31 ............................G TAGACACCTAAAACCGTCTCAAACCGCTGTA 1544188 29 100.0 31 ............................. ACTATATTGTCGGAGCATTCCATTTTGTTGA 1544128 29 100.0 31 ............................. AGATAGGCAATTAAGCGCAGGTACGATATCA 1544068 29 100.0 31 ............................. TTCTGTAATTGGAAATCCGACAGGTGTGTTT 1544008 29 96.6 31 ............................G TTGGGCAATGGTTTGCCTTACTGAATAAGAT 1543948 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 6 29 98.9 31 GTTAACTACCGTATAGGTAGTTTAGAAAA # Left flank : GACTATATACATATTACTAATGTTAAGTCTGTCCCTAAAAATATTCAGGGCTACGCAAGCTTTTTTAGACATCACGTAAAATCAAATCCATTTACTGTTGCGAAGAGACTTTGCCTCAGAAAAAATAAAGGAAACGTTAATCTTGATGATTTAAAAGACATAAACAAATTAGCCTTACAAATCAAAATTGAACATACCAATCTACCTTATGTTTGCCTATCAAGTCATTCTAGCAAGCACCGTTTTAGGTTATTCATCGATAGGGAATTAGTTCCCCTTTCTGTTGAAGGGAAATTTAATTCTTATGGTTTAGCCGTTAAATCTAACCTGGTTCATGGGACTAATTCAATGGGAACAGTTCCCTTATTTTGAAGAATGTTTTTTAGATCTTTAAAAACCAGTTAATAATCAATAACATACAAAAATGTCAAAAATTTTGGTCTTTAGACTTAAATTAGTTAATATCTAATTAAATCAATGTTTTGAGACTTTTTTGTACA # Right flank : CATATACCAGCGAATAAGTAAGCTCTTAAGGAGAAGCGGTTGATTCAGCAAAAGATAAAGTAGATGAAGTGAAAGAAAAAGCTACAGAAAAGACTGAAGAAGCGGTTGATTCAGCAAAAGAAAAATACGATGCTATGAAGGATGCTGCTGGTGACAAAATTGATGCTATAAAAGAGTCAACATCCGAAAAGGTTGAAACTATCTCTCAATAATGTCTAATAACTCTATTCTGGTTTCTAAGCCAGAATACCTTCAATTTGAAGATACATTAGAGTTATCGAGTGGGCAATCCCTAAACTCATTTACACTTGCCATTGAAACATATGGCAAGTTAAATCCCTCTGCCACTAATGCTGTATTAATATGTCACGCACTTAATGCATCACATCACGTTGCAGGTGTCTATGAAGACAATCCAAAAGATGTCGGTTGGTGGGACAATATGGTTGGACCTGGTAAACCTGTTGATACTGATAAATTCTTTGTAATAGGTGTTAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTACCGTATAGGTAGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTAACTACCGTATAGGTAGTTTAGAAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1588978-1589663 **** Predicted by CRISPRDetect 2.4 *** >NC_021036.1 Taylorella equigenitalis 14/56, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 1588978 28 79.3 86 C.A.......-...........A.C.G.. GCAGCAAAAGTACCACTCGCACAAATTTTTCTAAACTACCTATACGGTAGTTAACACTAGAGGAAAAAATAAGAGTAAATGACGAT C,C [1588992,1589002] 1589094 29 100.0 31 ............................. CATATACCAGCGAATAAGTAAGCTCTTAAGG 1589154 29 100.0 31 ............................. TATACCACAGAACCAATATCGGGTGATGCAT 1589214 29 100.0 31 ............................. AGATTCTTACTCTGACAAGAACCAACATACT 1589274 29 100.0 32 ............................. AATCGTCATTTACTCTTATTTTTTCCTCTAGT 1589335 29 100.0 31 ............................. TAACCAAGATTATATCGAGCCGATAGGAGTT 1589395 29 100.0 31 ............................. CGTTAAATATAAGAAACTCTATGAAGAGAGC 1589455 29 100.0 31 ............................. TTTCAGATATAAAATCTGTGTGTTTAAACAA 1589515 29 100.0 31 ............................. TTTAAATCAAGGGCTGAAGCGGAAAGTGAAG 1589575 29 100.0 31 ............................. TCCCCATCCCAGGCTTGCACCCAGCCCCTAT 1589635 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================================================================== ================== 11 29 98.1 37 GTTAACTACCGTATAGGTAGTTTAGAAAA # Left flank : ACCTTTATTTATACAGCTTTCTAAACTACCTATACGGTAGTTAACTAAATGACGATTTGGTAGACGTTGATTTATTTTTTCTAAACTACCTATACGGTAGTTAACAAGATTTAGAGTGTTGATGTCTCCATTTGATATTTCTAAACTACCTATACGGTAGTTAACAGTGGAGGGCTGTATATTGAGGTTCGTCCAGCTTTCTAAACTACCTATACGGTAGTTAACGGCAACAGAAGGCGATTCACCATAAACCACTATTTCTAAACTACCTATACGGTAGTTAACAATACTTATTTTAAGGTAGCAAATCAAGTATTTTTCTAAACTACCTATACGGTAGTTAACTTCTTTAGGCAACAAAAAACCCTGCTCTTGCATTTCTAAACTACCTATACGGTAGTTAACGATTATCATAAATACCCTCCCAGTCTTTATAATTTCTAAACTACCTATACGGTAGTTAACACGCCCTTGTTGTATATAACCTTAATACGATTTTT # Right flank : AATAAAATTTTGACCAATTCGATAAGCACAGCAACAATTGCCTCAGAGGATAGGATTGGGGAGCAGTTAGCAGTTCAGGCTCAGATAAGAAAAGAATCAGGCTCAGAGACAAGAAAGTTAAGCTCAGAAGTTCAGTACTTGTATGAGGATGGAGAGTTTGTACCGCTTGTCATGAAGGGCATTCTGCCATGGCTGTCGGCTTTTCGACTATTTCTAATAACGGTAGATGGATTCTTAAGGGTAATATCTCTGGCAATGGTCGCGGACAGGTCAGTGCAGGCCTCGGTGCAGGTATTGTTTGGAAGTAGGTGCTTAAGGGGTAGGAGCTCTGCACTGGCACGGGCATAGGTGCAGGATGGATTCGGACCACACAATGGCTAGGATTCATATGTCACCTCCGAACCCCTCTAATTAACCGCCCCTAACTTGTAACAAACTTATAACCCACGGATTGTTTATTCGTGGGTTTTTTGCAAGCTTGAGTTGCCAAATTGTAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTACCGTATAGGTAGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTAACTACCGTATAGGTAGTTTAGAAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1603755-1603486 **** Predicted by CRISPRDetect 2.4 *** >NC_021036.1 Taylorella equigenitalis 14/56, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1603754 29 100.0 31 ............................. TGCACATGCCTCATCAGTTTTTTCTTTAATA 1603694 29 96.6 31 ............................T AAAGAAACGTGTGACTGTATCAATCACATTG 1603634 29 96.6 31 ............................T CTTTTGCGGTGTTAAAGTAAATTGGCATAGC 1603574 29 100.0 31 ............................. CCCGTTCTGCCACTTCCCACCTTACACTCCA 1603514 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 5 29 98.6 31 GTTAACTACCGTATAGGTAGTTTAGAAAA # Left flank : CTCCACCAACACTTTTAGGTGTGTGTATGCTCTCTTAGTATGAGTAGGTATGATTTACAAAAGGATGTTTTATAAAGCGTATATTTAGTGAATGCACTAATGGTATGCGACTTATAAAGTATCTTTAAGATGCTTTAAGGCTGTTCTTTAACAATTTGGAAGAAGCACAACAAGTAAAACAACGAAAAAGAGGTTGTGTAAGTGCGAGAAAGTGCCACTATATGGTGCTTGATGGTGNNNNNNNNNNCAATTAAGTATATGGGGGGATTAGCTCAGTTGGGAGAGCGCCTGCTTTGCACGCAGGAGGCCGTCGGTTCGATCCCGTCATCCTCCACCAACACTTTAAACTGATAGGACTCTGAAGGGTGTTTTATTAATCGTTCTCTTTAACTTAAAAGAGAGTGATTTAATAAAGTATCTTTAAGATGCTTTAAGGCTGTTCTTTAACAATTTGGAAGAAGCACAACAAATCGTCATTTACTCTTATTTTTTCCTCTAGT # Right flank : CATATACCAGCGAATAAGTAAGCTCTTAAGGAGGTTAGATAGCTCATCGTATTCAAATCTCCATAGCTTGGTGACATGATGATCAAAGATGTCGTATGAGTGAATCTCCCTTAACACATTACCTAATGCATCAAGCTCAAACTGATTCTCTGATGATACTAACTATCTAATGAAAGAAAATAGAGATTGGACAAAACCTTTAATCAATGCCTACAAACACTTCTCTAATATGTATTGCCATAATAAGGCTAGTGTTTGTAAAAGCTTTTTAGAAATGATTCATTTAAAAGACTTAATTGAGATTCACGCATATCAAAGCAAACTTATTTTTAAAGATTTGGGGATTGAACCCATAGAATCTGGATTAGATTAAGTGTAGCTAAGCTCTCCTTTGCGACTATCTTTAATGTTGATTAACTGATTTGCTCCATCGTAATGATAGTCTTGATTTAGTATGCTTTTCTTGACGTATTTACCACTTTGAGTGTGTTGATTAGCTA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTACCGTATAGGTAGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTAACTACCGTATAGGTAGTTTAGAAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //