Array 1 5016-7122 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDA01000032.1 Loigolactobacillus bifermentans DSM 20003 NODE_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5016 28 100.0 33 ............................ CTATACCCCTCTCAGTCACATGAATAATGTCAT 5077 28 100.0 33 ............................ GACATCTTACCACTTTTAGAACCCACAAAGTAA 5138 28 100.0 34 ............................ TAAAGCAGATCTGTTAGAAAGCCTGACCATGGAA 5200 28 100.0 33 ............................ TAGTACGGCAACGATTTCGCCATCTTCCGGTGC 5261 28 100.0 33 ............................ ACCTCGATAGCATAGCAAGCACCAAACAACGGG 5322 28 100.0 34 ............................ TCTTGAAATTCCATTTCTTGTTGAGCAAGTTGTA 5384 28 100.0 33 ............................ CAAAAACCAAACCCCAGTAACGGGTGAGCTGAA 5445 28 100.0 33 ............................ CACACGCATAGCCTGTCACCTGGCCGATTGCGG 5506 28 100.0 34 ............................ TACGTTCCTGGTGAAGCTCATCGCGAAAGAAACA 5568 28 100.0 33 ............................ TTTATTATTAATAGCGTCAGTAGCTTTATCATC 5629 28 100.0 34 ............................ TAAGGTTCATCTTTACAATAGAAATAGACATCAG 5691 28 100.0 33 ............................ TATGTTTGCGCCGTCTTTAAAATTTATAATTTT 5752 28 100.0 33 ............................ CAATAATGAGTGACATTACAATTGATATACCTA 5813 28 100.0 33 ............................ TACGTGAACGGTGCCAAATGTTCGTGATCTATT 5874 28 100.0 33 ............................ TAGCAACTGTTTTAGTAGGACTTATGTTTGGTG 5935 28 100.0 33 ............................ TAGACATTCTACCGTCTTCGAGTGCATCACCAG 5996 28 100.0 33 ............................ TTGAAGATGATGTCATGGACATTTTTTTTGCAG 6057 28 100.0 33 ............................ TGGACAATAATCGACCTAAGCCAGTATCGCGAC 6118 28 100.0 33 ............................ CTTACCGTCCGTATCGCGTTGAGTGCCAACCAT 6179 28 100.0 34 ............................ TCTCTAGTAGGCCCGGTCGGATCATCGGCGTAAG 6241 28 100.0 33 ............................ TTTCTTGATGTGAGCACTCAGCCACACTAACTG 6302 28 100.0 33 ............................ CGACATGTATGATTTCTGGTTTACCAAAGACAA 6363 28 100.0 33 ............................ TACTTTGATGATCAGCAATGAGGGGCCGTTACC 6424 28 100.0 33 ............................ TGGCCAAATCCGCGGGACGGTTGACGTCGGCAC 6485 28 100.0 33 ............................ TAATAAAGCGCTGATACGCAACAGTTGGGAAAA 6546 28 100.0 33 ............................ CGTTATCAAATTTTTCAATTCTATCATTAATTT 6607 28 100.0 33 ............................ TAAGGCCAACACATTGTCATTGGTGTAATCGGC 6668 28 100.0 33 ............................ CGGAAGATGAGGCGCTAGATCTCATCGATGAAA 6729 28 100.0 33 ............................ TTTAAACCAGTGGTATGGGCCTTGCGGGTTCAT 6790 28 100.0 33 ............................ CAACCAATATGTTAATTGCAAGCCCACATTAGC 6851 28 100.0 33 ............................ CCAACGTCGTACCATTCCAAAACGTTTGGTCGG 6912 28 100.0 34 ............................ CAGTGCTGCTATTGAACCCCGTTCGATCTTTCAG 6974 28 89.3 30 ............T.......AT...... CTCCTTGGTGTGGTAAAATTAAAAGATAGT T [6999] 7033 28 89.3 33 ..C.........T.G............. TAAGCTGTTATTCATTACAGCATATTCTTTTCT 7094 28 82.1 0 ....................A..TT.GT | T [7114] ========== ====== ====== ====== ============================ ================================== ================== 35 28 98.9 33 GTATTCCCCGCACCAGCGGGGGTGATCC # Left flank : TATTTGATAATCGTGAATTTAAAGCAGCCTGGTTATTATTAGCTTGCCCGTTGATTTTATTAATTGTAGGATTTATTAAAAAACCGTCAATAAAAGTTGTGCGGCTGATTTTAGCGATTGTTTCATTGATCATATTTTTTGTTACGAAAAGCGAAGTGAGCGCTGAATTTGCAGATGATATCGCGCTAAGTGCGATTATTGGAAGCAGTGGCATGATTTATATTGTCGCCAATATTGTTAGCATTGTTGCAACTGGTGCAGCATATCGAAATATAGATTTAGTTAAAGTTTTTAGTCATGTGACAAGCAAGTAAATGGAGGCTCTAAAGCAAAAGGATGTCATCGGATAGAGAGATGACATCTTTTTGCTATTCGTTGAAAAATAAATAGGAATATAACTCACTGTTGGATGTAAAAGCTACGCACAGATTTGCAATTAAGCTGATGAAAAAACGATATTTGCTCTTTTAAAAATGCTGATTTTATGGGATTCTTTTAGT # Right flank : TGATATAATCAGAACAAGCTATTATTTATTATAATATTCACTTCCATTATTAGCAAATATAAATCCAGTGTATGACAAGTGTGATCTCATTATTCCTAAATAGAAGTTATGCAGATGATAGCGAGCGAGTGATTAAGGATGGATTTTACCTAATTTTTAGTAAGATAGAGCCAGCACACATATTAAACAATTTATACTTTTAAATGAGATCATATTTTATAAAGTTGTTATAATAGTTAAAACGCTGCGTCAAAACAGTATCACACCACACAAACAAAACTAAGGTAGGTGAGAATTTGAATTCTTTATCAAAACAAGCAACCGCCTTATGGGCGAAAAAAAGAAGTGAAGACGGTGTTCATTATTGGTTGCCACTGGTGGCACATTTAATTGATACGCAAAAGACCATCAATTTTTTGTTTAATAATTGGCTAAGTGAGGGTCAAAGAGAATTGCTGGCGCAGCGGATAGGCGAGGAAAACATTCAGAAACTGGTTAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACCAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.00,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16836-19733 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDA01000032.1 Loigolactobacillus bifermentans DSM 20003 NODE_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16836 29 100.0 32 ............................. AATCCGCTGGCACCATCACCGGCGCCAATTGC 16897 29 96.6 32 ............................C TACACGAGGATTAAATACTTGCATTAACCCTG 16958 29 100.0 32 ............................. AACCAAGGAACCATTAAAGTTACCAGTGCTAA 17019 29 100.0 32 ............................. ATGATCACTCAGCCACGCTAGCCGCTCAGATA 17080 29 96.6 32 ............................C ATCTAAGCGAATCATTCGCGCCAATACGAATT 17141 29 100.0 32 ............................. GCCATCTTGCTTAGCTAGTTTATTGTAGTTTT 17202 29 96.6 32 ............................C TGCCCGAAGTAACTGGACCTTCGATTAGATCA 17263 29 100.0 32 ............................. AAAGCTCAAGCTGATTCAATGATCAAAACAAT 17324 29 100.0 32 ............................. GGTGCGACTGATGAAGAAGTGAAAGAAGCATT 17385 29 96.6 32 ............................C ACTTTAACCGTAGATGGCCTAAAACAGCTTCT 17446 29 96.6 32 ............................C GCGTTAGCAAAAACGGATTGCTTGGCAGCTTG 17507 29 96.6 32 ............................A AGTACATTGTGCTGCATGATGTGGGCACTGAA 17568 29 100.0 32 ............................. ATACGAGGAGAAATAGAAATGAAAAAAATTGC 17629 29 96.6 32 ............................C TGTGCCAGTAATAAATAAGTAATAGGTTGTCT 17690 29 96.6 32 ............................C TATCACCTCCAATTTCCGCATACAAATCTGGC 17751 29 100.0 32 ............................. ATTCAAAGAGCTATTGGTAAGACGAAAGATGG 17812 29 100.0 32 ............................. ACAAGCTGGGCCTACTTAAAAACTGCTAAGAT 17873 29 96.6 32 ............................C GATTTTGGGTGTTGTTGTTGATCCGACGACCA 17934 29 100.0 32 ............................. GATCAGTTTGCTGCTATGATCAATGCGGCGTT 17995 29 96.6 32 ............................C GTTTTGAGCTAAAACTGCGGCCGCGTTTTGGC 18056 29 96.6 32 ............................C AAGTTAAATGTTTCATCTTCGCCGTACATCGT 18117 29 96.6 32 ............................C TTTCTTACAACCCTTGGGACTGTAGGGCTGAA 18178 29 100.0 33 ............................. GTAAATACCAACATCTTCTCTTATGTGTCCACG 18240 29 100.0 32 ............................. GATTATCAAGGTTATGCTAGTATTGCTACTTA 18301 29 96.6 32 ............................C CAGATATTCAAAGAACCCTTCAAGGTTACTTG 18362 29 96.6 32 ............................C TTGGTAGTAGCGGAACTCACGTGCACGTTGGT 18423 29 96.6 32 ............................C AGTAGATGACCGCCATATCCTAGTAAATGATG 18484 29 100.0 32 ............................. TTGGGATCATAGTATCGTGAGTCATCAGCGTG 18545 29 96.6 32 ............................C TTAATCTGTTCTGCTAAGTGGTTCTGGTCTAC 18606 29 96.6 32 ............................C GGTGCCGCAGGTATCACCGGTCACGCGATCAC 18667 29 100.0 32 ............................. CAGTGTACTGCCAGCCTGTTAAATTATTCCAG 18728 29 100.0 32 ............................. GTAGGGCGGTGACTTAAATGAAATTACTCACA 18789 29 96.6 32 ............................C GACCTCCTCGCCCCACTTGAGTAAATCGTCCA 18850 29 100.0 32 ............................. AATGGAGATCCAACTGATAACAGATTAGTAAA 18911 29 96.6 32 ............................C TAAAAAAGGTGTGATCGGTGCCTTTAACCGCA 18972 29 96.6 32 ............................C TGACTCAAATCCGTACAGTACATCGTAAAAAT 19033 29 100.0 33 ............................. ATCATAAGATACCCCGTCATCTGGTGTAGTAAA 19095 29 100.0 32 ............................. ATATCAAGTCGGGATGACTGATCGGGTTGCGG 19156 29 100.0 32 ............................. TTGTTAAATTGCTTCATGATTTTTCTAAACAA 19217 29 93.1 32 ...........................TA CTGATCAAGTCAAACAAGTAGTAGCTGATAAA 19278 29 100.0 32 ............................. AATCGGGTACAAGGCTGACGAGCTTGCCGTCC 19339 29 96.6 32 ............................C GATGTTTTGCAATTCCCGCAGTTGGTCATCGG 19400 29 100.0 32 ............................. ATGGCCTGGAAGGCTATGAAAAAATTGAGGTG 19461 29 96.6 32 ............................C CCAATCCGACATCAACCTGCGCGTCAAAACCA 19522 29 100.0 32 ............................. AAGTGTATGTATTGCGGTTCCCAACACGTTTT 19583 29 100.0 32 ............................. ATTAAGACACCAGATCAAGAGCTTTACGATGC 19644 29 96.6 32 ............................C CTTATGCGTTTTACTATCCGTTACTGGTGTAC 19705 29 89.7 0 .............T............TT. | ========== ====== ====== ====== ============================= ================================= ================== 48 29 98.0 32 GTATTCCCCGCACCAGCGGGGATGATCCT # Left flank : GTAACACAAGATAAAATTATTGCAATTGGGGCTGCTAAAATGGTGCATGACCAGTACAGTCAATTTTATCAACTGATTAAAATTGATACGAAAGTGCCAAGTGACATAACAAAACTCACTGCTATTACATCCGAAATGCTTGAGTCTGAGGGTATATTACTTACGGAAGCACTGGAAAAATTGAAAAAATTTATCGCAGATTTACCAATTGTCGGCTATAACAGCCGATTTGATATGACCTTTTTAGCCAATTCGCTCCGCCAAGCAGGTCTACCGCCTTTGAGCCAAAATACTGTAGATTTAATGCCAATTGTGAAGAAAGAGAATAAGTTTATAGATAATTATCGCCTCAGCACAGTCTTACCAGAATATGAAATCAAAAATAAACAGTCGCATCACGCATTGTGGGATGCAGCAGCCACGCTGGAACTCGCAACAAAGTTGATAGAAAAACAATCTCTAGTACTTTAAAAGTGCTGATTTAACGGGATTCTTTTAGT # Right flank : TTTGAAGCGGAAAGTTGCTAAACAACAGTAGAGCGTTTCCCATGTAGGTCTATTATTAACAGGAATATACGGTGCTTTTTTAGATGAATTTGTCAGTAAAACCTTATTCAGAACTACTTATTCGGTATATAGCTGAAATTTCTACTTTTTTCAGTGTAATGATAGTTTTTACGTGGTCATGACACTAGTCAGGCGTAATCGATAATGTATGCGAAAACAAAAAGACAGGTGATCGTTATCGATTTGTGCTGGTAATGTTTTAGAGGTATTAATATTACGGAAGTAATATAGTATTTTTTGCGGGATAAAAAATCTCGCCAGTATACAAACAAGCCGTGAGCACGGCAAAACTCTATCGGCGACATTGGTGGTCTATGTCGAGCATCCTTAACTTAGCCTGAATTATGCATATGCATCAAATTGATTGGCCAAATTATCAGTTTTACGTAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACCAGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5098-2808 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZDA01000084.1 Loigolactobacillus bifermentans DSM 20003 NODE_140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5097 29 96.6 32 ............................C ATCCGTCAAAAACTGCTTAGTCTTATCAGATA 5036 29 100.0 32 ............................. CTGTTTCTTTAAGTTCTCTTCTGCTTTCTTAT 4975 29 96.6 32 ............................C ACGTAAATGCTAGTAATGTTGCTGTAATGCAT 4914 29 100.0 32 ............................. ATGCCGAAGTTACGAGCAATTGAAGGTGGCAA 4853 29 96.6 32 ............................C ACAACGGCGATTTATACGATGGCTACAATTCG 4792 29 100.0 32 ............................. GGATTGTGATTCAATTAGCATTGCCACTGATG 4731 29 100.0 32 ............................. CACACCGCTACGTGAAGACCCGATGATGTTTG 4670 29 100.0 32 ............................. GATTCAACTGGTGGTTATCCAATCCAAAGGGC 4609 29 100.0 32 ............................. ATATGCGACCGTTCTCTGGTTTGTAGCCCATT 4548 29 100.0 32 ............................. ATAAGTTGCCGGGAATTCTTCATCACGAGCAT 4487 29 100.0 32 ............................. CAACGGATAACCTACTTTCTTTAGAAGTCTGT 4426 29 100.0 32 ............................. CTTATCTAATAGTCCCATTTTCAATCTCTCCC 4365 29 100.0 33 ............................. TGTACCATTAGGATTATAGACATTCTCAACAGA 4303 29 96.6 32 ............................C ACATGGGCAAGAATCTTCAACGTTCGATGTTT 4242 29 100.0 32 ............................. AATTACTGCTTGACCATCAGCGGTGTTTGCTT 4181 29 96.6 32 ............................C CAGATTATTTATGCGCCAGATGCTACAGACGG 4120 29 100.0 32 ............................. TGTCAGCAAGTGAGGGCGCTTCACAAAAAGCG 4059 29 100.0 32 ............................. TAATTTATGACTTACCTAAAAATGGGAAACAA 3998 29 100.0 33 ............................. GACCAGGTCATTGTTGAGGGGCGTCAGGGTAAA 3936 29 100.0 32 ............................. AACAACCAGCCAAACGCCTCAGGTATCGTATT 3875 29 96.6 32 ............................C AATCCCGGTTAGTACTTTGCCTGACCCTGTGG 3814 29 96.6 32 ............................C ATGTCTTTTAGCGGCTCACTCATAGCAACCGC 3753 29 100.0 32 ............................. TGGTGCAAGCCCATAGCCATTGCCCTGGTTGT 3692 29 100.0 32 ............................. CAAGCGGACTGGACGCCAGGCGCGAAAAAAAT 3631 29 96.6 32 ............................A TTCAGCCTTAGTCGGAATGTCGCCGGCCTTAA 3570 29 96.6 32 ............................C CAGCTGTGTAGTGTTCTTCGTACCGACGGCGG 3509 29 100.0 32 ............................. GTTAATGCATCAGTCGCCATCGTGTCGGCATT 3448 29 100.0 32 ............................. AAAATCGGCATCATTTCAGCATATGGCGACAA 3387 29 100.0 32 ............................. GGTCAGGTCGAGCGAGTTGGAACTGCAAGCGC 3326 29 96.6 32 ............................C AACTTAGAACTGGTTGAAGATGACGCAATTGC 3265 29 96.6 32 ............................C GTCTATGTGGCCCCGAATCAGCTGCTACAGGT 3204 29 100.0 33 ............................. ACACTACAGACACGACTTACACGCTATCAGCTG 3142 29 100.0 32 ............................. CTGTATCTTGAGAACTTTGTCGAAGAGATTGG 3081 29 100.0 32 ............................. CAACAGTGGACTGATAGCCAAATCAAAGAATA 3020 29 100.0 32 ............................. TATCTGTTGTTTGTCTATGAAGTAACGCAAGT 2959 29 100.0 32 ............................. ATCCTTGGCCCCTTGTAGGCTTACCTGTTTCG 2898 29 100.0 32 ............................. ACTTCAACATGTCCATTTTGAAAACCTTCAAA 2837 29 89.7 0 ............T........GC...... | T [2811] ========== ====== ====== ====== ============================= ================================= ================== 38 29 98.7 32 GTATTCCCCGCACCAGCGGGGATGATCCT # Left flank : AAACTTGTTTGGCAACAGCCAGCAATAGATGAAGTGGACGGCTTTGTTTTTGATGTGGTCAGTCGGGATTATCCGATGTTACATCGCAAAACAGGACATGGTGTGCACTTAAGTCGAGTTGTGTTTGAAGGTTTGTTGCAAGTTCAAGATTTAACAGCATTTAAGGGTACGCTTATCAAAGGCTTAGGTCGTGAGAAAGCGTTTGGTATGGGACTAATGACTGTTATAGCGACCGTATAACATTATGGGTAAACAAATCGGTGCTGCAAAGCCAAAGTATTTTGAGCTAAGGTAAATCAAAGATATTTCAGATTCAGTGCTAATTAAAAATAAATTCATAAATAACTATCATCTTAGAGTGGTTGTGAGAGAATATGGTGTCAAAAAATAAACGTCTTTATCCTGTGGAATGCAATAGTTATGTTAGAGCTTACAATGAAGTTGATGAAAAAACAGTTTTTGCTATTTTAAAAGTATTGATTTAATGGGATACTTTTAGT # Right flank : CTTAGAGGTGACTTCAGTGCTCATTCCGTCTTGTATTTCCGTACTATTGAGAGTGCTCTCTCAAAAAGATGACGTCTGTAAATTTGCTATTATGTATTCCCTACATCAAGGGCAAAATATCAATCATTAACAATGCATATGAGTATTTCTGTATCTGCTGGGAGCTAGATTGTTTGAACATCTGTGGTAGTATATTAATTAAAGTATCTTCCTACACGAGCAGAGCAATCGTGTGATACACAATATTGGTTTAATTGTTAATCCCTGCATTAGCGGGGGTGATCCTTAACATCAAGTGATATTGTTAAGCTTTTAAAAGTATTCCTCGCACCAGCGAGGGTGATCTCGCTTTTGTTGTGCATGACATGACTGTCGAACAATATTTCCTGTACCAGTAGGGATGATTTTGACCATTGCTAATTTGTATAATTATTAAAGCGCGGCGCAAAAAAAGTATCGCACATTTCTATTCTTAAACAGGAATGTACGATACTTTTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACCAGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGATCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //