Array 1 202647-205859 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJD01000003.1 Moraxella catarrhalis strain BE5 NODE_3_length_235732_cov_34.390832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 202647 28 100.0 32 ............................ GCTTTTAATCCGATTTTTGAAGCTCTTAGTGG 202707 28 100.0 32 ............................ ACAAAATTGAAGCTTAACTTTTTCATAGCCAT 202767 28 100.0 32 ............................ ATCAAGCGTTAATAGCTTAAGCGACAGTTTAG 202827 28 100.0 33 ............................ ACTGAGCGTAACCGCATTACCGCCGCCATCTTT 202888 28 100.0 32 ............................ GACACGGACGAACACGAAAAAAACTAATCGCC 202948 28 100.0 32 ............................ CAAAACTTCAATTTTGCCTATCATCAAGAACC 203008 28 100.0 32 ............................ AAGGTGAGATAATGATAAGAGTTGATAAGTGC 203068 28 100.0 32 ............................ TTTGACAATCATCGTATGTGGCTCAGGGGCAA 203128 28 100.0 33 ............................ CACCAAAACCTTGACACGGTCAGGATTTAGCAC 203189 28 100.0 32 ............................ GCCTCTTCCAATTTTTTCTTCAATGCTGCTTT 203249 28 100.0 33 ............................ ATTTTGATTTTTGAAGCATTGAGCGAATCTGAG 203310 28 100.0 32 ............................ AAACAAGTCGGTGAGATTATTAAGCCATTATT 203370 28 100.0 32 ............................ ATAGTTTCCGCCACAAAGCAACCGCCATACCT 203430 28 100.0 32 ............................ ATCATAGTTAATGACTTCTTGCACACCGTTAC 203490 28 100.0 32 ............................ AATTGGCGTACGCAGTGATTGGTCAAGATGGC 203550 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 203610 28 100.0 32 ............................ GCACACACCTGACAGCCAACACTCAATCAATC 203670 28 100.0 32 ............................ TAAAAGCTCATAGTTAAGCTGAGTTGCGTGAA 203730 28 100.0 32 ............................ TGTTGAAAAAATCTTTAGTACGCAGGATAGAT 203790 28 100.0 32 ............................ AACTTACTGAGCTTTCGACTGTTCTGATGCGT 203850 28 100.0 33 ............................ ATGGCAGTATTATGAAACGGGCAAACTTATCAT 203911 28 100.0 32 ............................ GCACGAAATACACGCATTACCATGTTCGCTTG 203971 28 96.4 32 ...........T................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 204031 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 204091 28 100.0 32 ............................ AACTTTTTAAAATACTGCTTGATGGATTCATC 204151 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 204211 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 204271 28 100.0 31 ............................ GTCAAAGACTCGTAAAAAACAGGCGTTGAGA 204330 28 100.0 32 ............................ ATCAAGACAAGAAAGCTTGATGAAACTGAAAC 204390 28 100.0 32 ............................ ACGGCAGTATCGTAACACGGCAAGCACTCAGA 204450 28 100.0 32 ............................ AAAATGCTTATTAAAAAGCGCACACAAACCCT 204510 28 100.0 32 ............................ TTTTCCGTCGCTCTTAGAATTTGGATTTCAGT 204570 28 100.0 32 ............................ AATTATATTACAGTTGTGAACAGTCGAGAAAT 204630 28 100.0 32 ............................ TACCCTACCAATAAGCATGAGATCACTGGCTT 204690 28 100.0 32 ............................ AGAGCTGACCGCCCATTGGGTTTTTAGCACAT 204750 28 100.0 32 ............................ TAAAGGTGTTGGCAATGTTACTTATCATAAAT 204810 28 100.0 32 ............................ ATAGACGCTTTTTCAACTCGCAAACAAGAAAT 204870 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 204931 28 100.0 32 ............................ TGTTGATACCTTACGCCTAGAATTCCCCAACG 204991 28 100.0 32 ............................ TTGCTTTGTTGTTAACGCACGCTCTTTTTCTG 205051 28 100.0 32 ............................ AGTTGAAAGCTCTGTGAGTGGTAACACATCTA 205111 28 96.4 32 .......G.................... AAATGATGGCGAAAACTGGACAATCATTGATG 205171 28 100.0 32 ............................ GGTATTTTTACCAAAGAAGGCACGGCACAAGT 205231 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 205291 28 100.0 32 ............................ TACAACACTCACAGGCTATGGTATTGGTAATG 205351 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 205411 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCATAGTAGCTT 205471 28 100.0 32 ............................ CGTAGCATTCAACGCATCAATCGTATTTTTGA 205531 28 100.0 32 ............................ TTTGCCATAAATCTCACGCACGGACTGCCGTC 205591 28 96.4 92 .........................C.. CGCCACTTGGGCAGTGGGTGGCTGAATCATGGTAATTATTTGGCGTATGGTTTGTAGAAACGCCACTTGGGCAGTGGGTGGCTTGGCTTGTT 205711 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 205772 28 96.4 32 .....T...................... TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 205832 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================ ================== 53 28 99.7 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGACGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //