Array 1 3590533-3587634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062795.1 Salmonella enterica subsp. enterica serovar Albany strain R17.4301 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3590532 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 3590471 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 3590410 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 3590349 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 3590288 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 3590227 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 3590166 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 3590105 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 3590044 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 3589983 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 3589922 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 3589861 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 3589800 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 3589739 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 3589678 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 3589617 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 3589556 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 3589495 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 3589434 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 3589373 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 3589312 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 3589251 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 3589190 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 3589129 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 3589068 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 3589007 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 3588946 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 3588885 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 3588824 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 3588763 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 3588702 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 3588641 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 3588580 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 3588518 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 3588457 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 3588396 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 3588335 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 3588274 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 3588213 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 3588152 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 3588091 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 3588029 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 3587968 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 3587907 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 3587846 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 3587785 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 3587724 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 3587663 29 100.0 0 ............................. | A [3587636] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3609070-3607090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062795.1 Salmonella enterica subsp. enterica serovar Albany strain R17.4301 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3609069 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 3609008 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 3608947 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 3608886 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 3608825 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 3608764 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 3608703 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 3608642 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 3608581 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 3608520 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 3608459 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 3608398 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 3608337 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 3608276 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 3608215 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 3608154 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 3608093 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 3608032 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 3607971 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 3607910 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 3607849 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 3607788 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 3607727 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 3607666 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 3607605 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 3607544 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 3607483 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 3607422 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 3607361 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 3607300 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 3607239 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 3607178 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 3607117 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //