Array 1 136567-135951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNQ010000004.1 Myxococcus xanthus strain AB023 NODE_4_length_219491_cov_56.1766, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 136566 36 100.0 36 .................................... AACGCGACCTGCGGCGTCTCTTTGTATCCGTGCACC 136494 36 100.0 37 .................................... TCCCTGCGCGATAGGGCCGCGCGCGTGGTACCCTTCG 136421 36 100.0 40 .................................... AAAGGTGGGGCGTCCTCTCGCACCAGGTGCCCCGCGTGGG 136345 36 100.0 35 .................................... TCGACGGGGACGAAATGGGCTCACGCCTCTGGACG 136274 36 100.0 36 .................................... TGGAAGAAGACGGCCATCCGCCGGCTGATCAAGCTG 136202 36 100.0 38 .................................... ACATGGATGCCGCGCAGTGCCTGCATCGGCCCGAGCCC 136128 36 100.0 33 .................................... CCAGCGCATATCCCTCGTACCGCCCGAGGTTCG 136059 36 100.0 35 .................................... CTGAGCTGCGGGTGAAGGGGGCGTTGCAGGCCAAG 135988 36 94.4 0 .....A............................C. | TC [135955] ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.4 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : GCTGACTGTCCTGTTGTCCAGGCGGACCCAGAAGAGCCGTTCAAGAACGAGGACCATATCGTTCCCCTGTATGGTCCCTTGAAGGACATGCTCTTCCTGATGGCCTTCAGCAGGAAGCGGATGGCCCTTCTGGAGCATCGGCGACGGTTCCTCCCTTCACTCGTGCGCAGCGGAACGGGGAATGTCCGAATCGTGGCTCCCTCCTTGGTGGGAGCCATCGACGAGACGCTTCTCCAGCTCGGCTTCCAGACGCTGCCCTATACCAGCCCACTGACTCCGCTCTACGAGCGCGGTGACGCAGCCTTCTACGTCGACCGTTCTTCACAGGGAGGAGGACTGTCCGCCGAGTTGGCGGCACGAGATGAGCGAGAATTCGGGAGGCTGGTCGAAGTCATCCAGGATTCTACGACTCTTGTATAGTATTATCCGGTCAGGTGCACCAAGCGCGGTCGCCCCGTGCTGACGGATACGGGCGCCATTGCCATCCCAGAGGACGGCAA # Right flank : TATCAGAAGATCTTCATTGTAGCCTGGGCCAGCCATGAACGCAGCGCCTCGCCTTCAACCCGGACGGGCGCGTTCTCGTGACCCAGATCAATCCAGGAGGCCTGGGTCGCCTGTAATCCGGAGGCGCCGCGGAGATCTGCCCCAGAAAGCCTCGCTCCATGAAGGACCGCGCCTTCCAGATGCGCATCTCGGAGATTCGCGGACGCGAGGTTGGCACTGACCAGGTAGGCGCCTTGAAGGTCCGCGCCTTGAAGGTCCGCGCCTTGAAGGTCTGCTTCGCCGAAGCTGGCTCGGAGCGCGTTCACCTGCGTCAGAATGGCCCCTCGAAGGAGCGCATAGTCCAGGTTGGCCTTTGAAAGCTGCGCTCTGGAGAGGCTGGCGCCGATGAAAGATGCGGACGCAAGGTTGGCGTGGGCGAGCTTCGTCCTGTCCAGGATGCATCCATCCAAGCGCGCCCCAGGAAGCGCTGCCTCCGATAGATCTCTCGACGACAGGTCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 139457-137842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNQ010000004.1 Myxococcus xanthus strain AB023 NODE_4_length_219491_cov_56.1766, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 139456 36 97.2 37 ...T................................ TGCTGACGCACCACGGCAAGCGGATGGGGCGCTGTCA 139383 36 100.0 39 .................................... GTTTCCGACGCGCACGCGCTTGCGGTGTCCGTCCGGGTC 139308 36 100.0 35 .................................... AAGGCGTTGCGCGCCACCATCTGGCAGTGCATGCC 139237 36 100.0 35 .................................... CCGTGGCGGCACACCTGTACGGTGCCAAGTCATGA 139166 36 100.0 35 .................................... AATCCTCACTGTACGAACAGCCCGCGCTGCGTCCT 139095 36 100.0 36 .................................... GCCTGATGCAGCGTGGATACACGCTGAAGCCGCCTG 139023 36 100.0 33 .................................... GAGAAGGGTGTCAAGGCTAGCATTGAAGGCTTT 138954 36 100.0 36 .................................... GAGGTCGCTGCCGCCCTGCGCGCCGTGGGCTTCCAG 138882 36 100.0 37 .................................... GCGTCTATCGCCAGGACAAGGGCTGTGTGTCCTTGGA 138809 36 100.0 37 .................................... CCTCGGATGTTGCGTTGGATCGCGTCGTAGGTGTGTT 138736 36 100.0 33 .................................... GGCGCGGAGCCGACCGCCATCGCGCGTTCCTTC 138667 36 100.0 35 .................................... CGCCAGGGGGGGTCCTGAACGCGATTCACCGCGTC 138596 36 100.0 37 .................................... AACGACCTCTGGTCGAAGTTGGTGCGTGGCAACGAAT 138523 36 100.0 37 .................................... CCTCGGATGTTGCGTTGGATCGCGTCGTAGGTGTGCT 138450 36 100.0 36 .................................... CAGGGCTGGGACCTGTATCTGGAGAAGACGCGCGTT 138378 36 97.2 37 ...........A........................ TACCCACCCATGCCGACCGTTATCAGCTCCCACATCT 138305 36 100.0 38 .................................... CTCGATGCGATGGGTTCGAATCCGGGCGGTCCTGTGAC 138231 36 100.0 33 .................................... TCCCGGGCCTGAGCTACACATCCGCGCTGGCAT 138162 36 100.0 34 .................................... GTCAGCATCGCGTCCGGAAACTTGCCGAGCGCCT 138092 36 100.0 35 .................................... CTTTACCTGCCGCGCCGACAACGACCTGCGGCGGC 138021 36 100.0 35 .................................... CCTTGGTACGTGGAGTGCGGCATTGCAGCTCTCAT 137950 36 100.0 37 .................................... CTGCCGCGTCCGCCCATGTTCTTGCTCTCCATGTTTC 137877 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 99.5 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGCGACCCCAAGCGGTGGCGGAAGGTGCATGCCCTGCTGAAGGGATACGGAGAGTGGCTGCAGCTCTCCGTGTTCCGCTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGACGCCGTGGATACGTTGCTGGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAGACGGACGACAATCAAGCACCTCGCCGTGGCGGAGGCTCGCGATGGCGAAAGTGGCGGATTCCCTGTCGTTTCATGGGGGTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATGGGGTTGGCGATTCTGGGTAGGGCCTGGGATGGCCAACCTGGGGGAAGGAGGGGGAGGTGCTTGAAAGGGGTTTGTAAGGTGCCGGAATTGCTGGGGGATTCAGGCGGGCT # Right flank : CGCTGGTTGTTACGCCAGTCGTTGTTGGTGTGGCCGCACACACTATTTGAGTTGTGAATGACTGTTCTCGCGGACACTGATTGAGGGGCTCGCGAGGAGAGGTTCCGAAAATGCCATTACGGAGCCGCGCCACCGGAAATCACGCTCGTGATGGGAGTCAACTCATTGTCGCGACAGCAGTTTCCGCGAGAAGCGGAAATGATTGCTCCCATCCTGCGGTTCTCCGGTCGCGTCAGGGCTGCCCGAAGGGCACCGCCGGAGGCGGCCAAGCCCTTGACGCGACTGGGGAACCGTAGTCCCGAGGCTACCAACCAAGTGGCTCACCGGACCATCAACAAAGGTGCGCGGCAACACCTCGGGCGACAGCTGCAAGGTGGTATTGACGGAGATGCTCTGCGACATCAACAAGAAGTCATGCTGAACTCTCTCTTGCTCCCGTTTGATGCCCTACGCCATGAAAGAACTGCTCAAGTACATCAATGGATTCGAACCCGCATTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 165095-161309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNQ010000004.1 Myxococcus xanthus strain AB023 NODE_4_length_219491_cov_56.1766, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 165094 36 100.0 34 .................................... GTCCGGCGCTTCAAAATCTCTTTCGACTCATGCA 165024 36 100.0 37 .................................... CCGTGGTGGGTGATGGCCCACGTCCACGGGCGCGCGA 164951 36 100.0 35 .................................... AGGTACTTCTCCAGGCTGCCGCGCATGCCCGTCAG 164880 36 100.0 35 .................................... GGCCTGATGCGCTCAGGCGGGTGGCTAGATGGATG 164809 36 100.0 35 .................................... ACGTGGCACGCGGACAACCTGCGCGTGCATGCCAA 164738 36 100.0 35 .................................... GCCGCGCTCCAGCATCGTGACGACGAGCACGTGGT 164667 36 100.0 36 .................................... TCCGTCTTCACCGTCATGTCGTCGTCCTCCCTCAAG 164595 36 100.0 36 .................................... CCCAGGCAGGCCCGATATTCGGCTTCAGCGCTCCAG 164523 36 100.0 39 .................................... TCCATTGGCTGAGGCGAATGCCTCATTCCATGGTCTGTT 164448 36 100.0 37 .................................... AATTGGGCCTCGCGGTGAACACCGAAAATCTGGTCCG 164375 36 100.0 35 .................................... TCGAACCTTCCGATGCTTGAAGGTCACCGCATGGG 164304 36 100.0 38 .................................... AAACTATACTCAGTCCTGATTTGCATTTGCGTCCTCCG 164230 36 100.0 38 .................................... CTAACAACGCTTTTGCTGACCCTGTGCAATTGGTTAAC 164156 36 100.0 36 .................................... TCCAGCTCCAGGTGGGCGCCAGCCAGCGCGAGGCGG 164084 36 100.0 36 .................................... ATGTCCTCGGCAATCAGGACGAAGGCGGCGCGTTCG 164012 36 100.0 37 .................................... GTGCGTCTGGCCTTCGCCGTCGTGACGAAAAGGATGG 163939 36 100.0 35 .................................... GTGCTACCTCCTACTGCATGAGAGACAAGGCGGGA 163868 36 100.0 37 .................................... CCATGAGAAGGCCATTGTCCCCTTCACGGGTTCATAG 163795 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 163721 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 163647 36 100.0 34 .................................... TCTGGCACCGGGGCCGTGGAGCGCGCTGGGTTCA 163577 36 100.0 40 .................................... TCGAGGCCGGCCAACCCGGCCGTTGGGTGAGTTCGAGAGA 163501 36 100.0 38 .................................... ACGGCGATGTGCAATGCGAAGCGTATCTCGGTCCCCTG 163427 36 100.0 37 .................................... CACGACATCCAACCCGGCCCGCGCCATGTCCGGGGCG 163354 36 97.2 36 .........A.......................... CTCCCATCGCGCCCCGTGAACGTCTTCTCCCGTCCA 163282 36 100.0 33 .................................... CTCGTATCGAGTCCAGGAAGCTCCTCGACTTCA 163213 36 100.0 38 .................................... CGTCGCCATGTCGTGTGTCCTCTGCGGTGCTGCGGGTG 163139 36 100.0 40 .................................... GTCAGGGCGGCGCTCAGGTACTCTGCGCGGTACTGAGCGG 163063 36 100.0 33 .................................... TCTGCCATTCGCACGATGCCGTCCGGCTTGAAT 162994 36 100.0 34 .................................... TCCGAGGTGGGCGGCAAGGTCGAGTGCGAGCGCA 162924 36 100.0 36 .................................... CCCAGGCAGGCCCGATATTCGGCTTCAGCGCTCCAG 162852 36 100.0 40 .................................... CACATCGCGGCGACCTGCCGTGACGAGAAGGCCATCTGGT 162776 36 100.0 34 .................................... AGGACAACCGCATCACGAAGGGGGAAGCGACGAT 162706 36 100.0 34 .................................... CTCGCCTACGAGCACGACATCTTCAAATCAGGAG 162636 36 100.0 37 .................................... AAACCCCCGTCGCGCCCCATGTAGCCGACTGGGTGGT 162563 36 100.0 36 .................................... AAGAAGTCCGGCCGGATTGAGCGGATGCGGCCTATG 162491 36 100.0 35 .................................... CCTTCCGTGCGATGCGCCAGAAATTGACTGGCAAG 162420 36 97.2 36 ......G............................. ATGACAGTGATGATGCGTGGGTCCGGGACGGTCAAC 162348 36 100.0 37 .................................... GGAGGGTGCTCCGCGATCTCCGGTGCCGAGTTGCCCG 162275 36 100.0 37 .................................... TAGTCATTCACGAAGATGGAGATGCCGCGGTACGCAG 162202 36 100.0 36 .................................... TCACCATGGCGGCCGTGCGGCGAAAGCCGCGCAGGA 162130 36 100.0 36 .................................... TCGTAGCCGGAGTACCACCCGCCATTGCCGTTCTCC 162058 36 100.0 33 .................................... GTTTGAAGATTGCCTGTTAGGCCGTAAGGCTTC 161989 36 100.0 35 .................................... CTGCAAGCACGGTGGCCAGCAGCTTGCCGCCGTTG 161918 36 100.0 38 .................................... AAACACACGGGGTGTTTCAACATATCGCCGTCGATTTC 161844 36 100.0 36 .................................... CCGAACCCATGGAACGGGTCATATTTATTGAACATA 161772 36 100.0 34 .................................... CTATTACGCGCGCTGCGAATGCAGTCATCCAAGA 161702 36 100.0 34 .................................... CTCGCACTCGACGCGAGACGGCGCCAACCCACCA 161632 36 100.0 34 .................................... GCTTCTCCGTCCTTCTTCTTGTCGTCTGCCATTT 161562 36 97.2 39 ...................................T GTGGTCCAGTGGTCGCCCTTCACGCGGACGACGTCGGGC 161487 36 97.2 37 .....................C.............. AAGGCTGGTATCCGTGACGCGGAGCGCTTGGTACGCG 161414 36 94.4 32 ..C............................C.... TAGTCGGTTCCGCCATTCTGGTGTTGCCAGAC 161346 36 94.4 0 ...............................CT... | CG [161342] ========== ====== ====== ====== ==================================== ======================================== ================== 53 36 99.6 36 GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GCTGGTGCGTATCGCCGGGAAGCGGGTGGTGGGTTACGCGCTCGAGCTGCATGGCGTTTCTGGAGAGGACTCGTTGCGAGTGCAGGCACAAGGCCTGGGCGGGCGCCGCCACATGGGGTGTGGCTTGTTTCTTCCGCCGCGTCCCGTGGTGCGGGGCGTTGTGCCGCAGCTCGGGGAACTCGCGCGGGCCGCGTGAAGGCTTGCCGGTGGAGCAGGGGCCTTGCAGGAACGTAGGACCGGGGGCTGTGCGGTGCGTGACATTCATGCACCTCGCCGTGGTGGAGGCCTGTGCCGGTGAAATCGTTGAAATCCTCAGCGAGTTCATGGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATTTATGAAAAACCGAGTGATTCCATGGGGTTTGGAATCTTGGGTAGGGCCTGGGAGGCGCAACCTGGGGCCGGGAGGGGGGAGGTGCTTGAAAAGACGGGAGTAAGTTGCCGGAACTGCTGGGAGATTCAGATGGGCT # Right flank : ATCTGGAAGCTGCGAGGCCATCCTGCTTTCCAGCAAGGTCGCGCTCGCCGTACAGGGCCTCCATGAGCGAACATCAGGTCTACGAGTTCGTGGCGCTGGACCGGCCCTTGACGGCAAAGCAGCTGGTCGAACTCCGGGCCATATCGACGCGGGCCGAAATCACACCGACCCGGTTCTGGAACGAATACCACCGGGGTGGCTTGATGGCGGACCCAGCCCAGCTCCTCCTGCGCTACTTCGATGCGCACCTGTACCATTCGAACTGGGGCGACCGTTGGCTGATGCTGCGCCTGCCGCGTGAGGGGCTCGACATGAAGGCGCTCAAGGCCTGCTTTCCGGCACGAGGTCCATCAACGCTCACGGTGTCTGGGACCTCCGTGTTGCTCGACTTCCAGGTGAGGGATGAGGAGCCCCCGGACGAGGAATCTCCGCCCGCCTCGCTCGCGGCGCTGGTTCCGCTCCGGACCGAACTCCAGCGCGGAGACCTGCGCGGGGCCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 139715-143788 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFNQ010000012.1 Myxococcus xanthus strain AB023 NODE_12_length_145720_cov_55.7529, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 139715 37 97.3 33 .................A................... GGGCCCGAACACGCGGCGAGAGCCAGCGCCATC 139785 37 97.3 33 .................A................... GCTGGCACACGGGCGAGCCGGAACAGCTCCAGC 139855 37 97.3 34 .................A................... CGGATGGTCCACAGGACCACCTGGCGATCATCGT 139926 37 97.3 34 .................A................... CGAAGGGTTGAAGGCCACGAGTGCGAGTGGCAGG 139997 37 97.3 37 .................A................... CACGCAGGCCCAAGCGCAGCTCCATGCGCAGATCGCG 140071 37 97.3 36 .................A................... CGGGCAGGTGCTGTGGACCGCGTTGGTGGCTGTCGA 140144 37 97.3 32 .................A................... CAAGCTGTGACAGCGGTGTGACAGCGGATTCT 140213 37 97.3 35 .................A................... AACAACTACCTCGGGAACATGGATGGCACGGTCAA 140285 37 97.3 33 .................A................... GAGGAGGGGCTGCGCAGGGCCCTGAAGTCTGAC 140355 37 97.3 34 .................A................... GCGTCCGGGCCCGCCTGGAGAACCACGGGGCATT 140426 37 100.0 32 ..................................... ATCCCCTCCTGTCCCATCCTCCCCACCACCAG 140495 37 100.0 33 ..................................... AGCGAGCTGGGACTCCAACTCCCGAACGCGGGA 140565 37 100.0 34 ..................................... CAGCGCGGCCGTCTGCGCTGGTGCTCCGGAGGGC 140636 37 100.0 34 ..................................... CGTGCATATTCACCGGCACCCCATCTGTCCCCTT 140707 37 100.0 34 ..................................... CGTGCATATTCACCGGCACCCCATCTGTCCCCTT 140778 37 100.0 33 ..................................... TGCACCGCCTCCTGCGAGGCTGCCGCGCAGCAG 140848 37 100.0 35 ..................................... TCCTCGCGAGTCGTAGCACCTGGGCGGCTCGCGCG 140920 37 100.0 36 ..................................... AGCACCCAGCGGATGCCCTGGGCGAGCTCCTCTTCG 140993 37 100.0 33 ..................................... ATAGACGTCGTAGGACTGGGCGAGCGCGGGGGC 141063 37 100.0 34 ..................................... TTCGAGCCGTCGGTTGTGGGGGACCTGTTCGGGC 141134 37 100.0 33 ..................................... TTGATCGAGCAGCTCAACGGGAAGAGCACGATC 141204 37 100.0 33 ..................................... CGCCCCAGCTTGCAGGCCGAGGAGCCGCAGTGC 141274 37 100.0 33 ..................................... GGAGAGCAGATGCGCGGCTGGTCCCTCATGGTG 141344 37 100.0 32 ..................................... GCAATCTGACGGTGAAGCCTGGCGCCGAGCTC 141413 37 100.0 35 ..................................... CCATCCGAACCGACACCTACCACCTGACGTGCAAA 141485 37 100.0 33 ..................................... CTGATCGAGCAGCTCAACGGGAAGAGCACGATC 141555 37 100.0 33 ..................................... CGTCCCACGGCAAGCCCGTCCCAGTGGCGCGTA 141625 37 100.0 33 ..................................... TCCCCAGCAGAGGCTCTTGAGGCCGCCTACGTG 141695 37 100.0 35 ..................................... TCCACGTCGCTGGGCTTGGGCCAGCCCGGGAGCTG 141767 37 97.3 33 ............................A........ GACGCAATCCGCGTCGATTCGTCCAAGAGGAGG 141837 37 100.0 35 ..................................... TGCACCACGGGGATGCCGAGCGCCGCCACCCGAGC 141909 37 100.0 35 ..................................... GGGACGGTCCACTTCTTCGAGCCCCAAGTCTACGG 141981 37 100.0 33 ..................................... ATCGCCGTAGATGGTCGCCAGGGGCCCGGCGCA 142051 37 100.0 33 ..................................... TTGATGCCGACCCAGCAGACCGCGCAGCGCTCA 142121 37 100.0 33 ..................................... GAGTGGCCCGGGAGGGACGGCGTGGCTGACTGG 142191 37 100.0 33 ..................................... TCCAGCCCGCGCAGACGGCGGGCAACGTCCGCA 142261 37 100.0 34 ..................................... ATGAGTCGCTGGCGCACCACATCCATGTCGCGCG 142332 37 100.0 34 ..................................... CCAGGGGTCGGAGCACACCCACGACAATCCAGCC 142403 37 100.0 34 ..................................... ATGGAGCGCGGACAGGTTCAGCTTGAAGCCCTTG 142474 37 100.0 39 ..................................... TGAACCCGCCCACGGGCGTCTGCTGCTCGCCACACGCGC 142550 37 100.0 34 ..................................... CCGATTCCTGTCGCACTCCGATGGCCGATTCCGT 142621 37 100.0 33 ..................................... GTAAAGCGAGGACAACAGCGCCACCTGGATGCG 142691 37 97.3 33 ..............................G...... CGCGAAGATCGCCTGCTAGACGAAGGTTGCCGG 142761 37 100.0 35 ..................................... TGTCCGTCGACGTCGAGCGCTTCGAACGTCACGTT 142833 37 100.0 34 ..................................... AGCATTCACCCGGCTGCTGTCACGGTCGTGTGGA 142904 37 97.3 33 .....................A............... TGGTCGCTGATGCTTGCGCCGAGCGCGGAGAAC 142974 37 97.3 34 ..............................C...... ACGTCCAGGTTGCTACGGTCGGTGATGGCGGCCT 143045 37 97.3 33 T.................................... TTGTAGACGAGGTATGCGGCGGCGGCGAGCGCA 143115 37 97.3 34 .......................A............. GTCGCAGATCACCAAGTCTGCTTCGGGCGGCTTC 143186 37 97.3 32 ...........................A......... TCATTCGCCTCGCCGGCCTTCTGGGCCTTGTC 143255 37 97.3 35 ........C............................ ATGATGCTCGTGGACAAGGACCCGGCCGCCAGCGG 143327 37 100.0 34 ..................................... GTCAGTGCGCACCGCAACGGCCTGGCGCCACAGC 143398 37 97.3 36 ......T.............................. CGTGCAGTCTCAAACCAGTCTTTGCCCGACCGGATA 143471 37 94.6 34 ...A...............A................. CTGAACGCCGCCGCCGGCGTGCTGTTTTCGAGGT 143542 37 94.6 31 .......................AT............ TCACCCAGCAACGTGGGGGAGTACCGGAGGG 143610 37 97.3 35 ..........A.......................... ACCGCTGACTCCGTGGACCTCGCGTACCTGGGCCA 143682 37 100.0 33 ..................................... CGCGAGGCGCACCGGGTGGTGGACGGGTGGGCG 143752 37 94.6 0 ......T............A................. | ========== ====== ====== ====== ===================================== ======================================= ================== 58 37 98.8 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGCTGATTTGTTACGACGTGCGGGTGTCGGACCCACAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAGGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGAGCACCCTTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCCTCCGCGAACCCGTCCCGGTGTACGCTCCGCCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGGGCGTCAGGAACGGCGAGGCGCTTTCGTGGCCCCGCGGGCCGGTTCGCGAAGTTCGGCCGGATTCCGTAGTCAGAACGGTATGTTGGAAGGGCAGA # Right flank : CCACCCAGAGCACTGGAGTCCCGGTGCCGCGTCCTGCTCGTTCCTCATGAACGCGAGTACTCTCTCTCTTCAACGGGTCCGAAAATTGGGGAGCAGATCACGAGGACTCGCTCATGCTCAGGCTCCAGAAGTCGCCGGGCATACCCAATCCACGGCACTTCTGGCTCGAGGTTTTCGGGGATGGCCGTTCCAAGCGCAACGGCTCGTCTCTATCCAAAGCGAACGCGGCCGACGCCCATCGGCTCACGATGCTGCTCATCGCCGCGCGCCGGTTGGACGAATACAAGGAAGATCACAGCGCCCTCCTCCCGTCGCACATGACCGGCAGGTGACGATGTTCGAATCCACCGTGGACGGTCGGCGCACGCGTCTGACGTTGGACAGCGACACGCCGCCCGACATCCTCCGCTTCATGCCGCAGGTGGCTGCCGCTTACGGCATCGAGCTTTGAGCACGAGGACCCCGGGCGCCCCAGGGTTGGAGGAACACCTCCGTCTCCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //