Array 1 349349-346512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYQ010000002.1 Psychromicrobium silvestre strain DSM 102047 Ga0310551_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 349348 28 100.0 33 ............................ CTGTCTGGTTTGGTGCGTGGAACTTTCGTTGAT 349287 28 100.0 33 ............................ CCGTCTGCGCAGCGCAATGTCTTGAAGTTAGTA 349226 28 100.0 33 ............................ CTAAAGATCGCAATCCATTAACGGTGGCCCTTG 349165 28 100.0 33 ............................ CTGGTCGCGGCACAGCGCAAACGCACCGATTCA 349104 28 100.0 33 ............................ ACTGGGTACATGCCTACGGCCTCCTGTGGGTCA 349043 28 100.0 33 ............................ CTACCCCGAGTTGTGAGATCCGGATCGGAGCTT 348982 28 100.0 33 ............................ CAGGGGGCGGCACACCTGATTCTCACCCAACAG 348921 28 100.0 33 ............................ CTTCACTTCTTAGCTCCACTACCAGGGGTAATG 348860 28 100.0 33 ............................ CTGGAGCGCTTCTTTTGGTGAGTGTCCGTTGTA 348799 28 100.0 33 ............................ CCGGCCACCTGAGCAGTCATTCCGCACTCGCAC 348738 28 100.0 33 ............................ CGCAGACCCAGCCTGACCGAAGTCAAAACTTGA 348677 28 100.0 33 ............................ GCGCGAACACCTCCCCCCAAACCATCGTGGCCA 348616 28 100.0 33 ............................ CTGGTACCTTGGCGTATTCGAGTCAGGGTCCGG 348555 28 100.0 33 ............................ CCCGGCCAACACTGACCTTGGTTCCCTGCCAAT 348494 28 100.0 33 ............................ CGGCATGGTGTGTGACACGCTCCAGGTCACCAA 348433 28 100.0 33 ............................ CTACTGGGGGAACACCGCAACAATCGGCATCCC 348372 28 100.0 33 ............................ CTCCCAGCAGGGCTGGGACGGCAAAGGCAAGCA 348311 28 100.0 33 ............................ CGGGATCAGACTGACCGGCCAGCCGTGCGACCA 348250 28 100.0 33 ............................ CGTCGCATTTGCGGCAGCAACAATCGTGTTAGA 348189 28 100.0 33 ............................ CACCGGGCCGCTGGCCAGGGACACCGAGAGTGC 348128 28 100.0 34 ............................ CCAGACCGGGCCAAGGCATCTCTGACCACTCCCC 348066 28 100.0 33 ............................ CTCACGTCCTTCTCCCCCGGCGGCGGAAAGCAC 348005 28 100.0 33 ............................ CTCACGTCCTTCTCCCCCGGCGGCGGAAAGCAC 347944 28 100.0 33 ............................ CGCCACCCGTGAAAGCTTGTATGAAGTGCGGTG 347883 28 100.0 33 ............................ CATCACGGCCCAAGCTCCGGATCGATTGGTTTG 347822 28 100.0 34 ............................ CGACCGCGCACACCGCATGGCTAAAGCGAAACTC 347760 28 100.0 34 ............................ CTGCCAGAGCCGGTATCTCATGACGAGGTTTGTC 347698 28 100.0 33 ............................ CGCGGCTCTTCAGGACGCAGAGCACCTGCATGT 347637 28 100.0 33 ............................ CACCTACTCCGATCTGATTTTCACGGCGATGTC 347576 28 100.0 33 ............................ CGCTGAACTGCGGCTGGACCTTGTACGGTCCTG 347515 28 100.0 33 ............................ CCATGCCTCGACTCCTAGGCTGTTTAGCTCCTC 347454 28 100.0 33 ............................ CGTGCTGGAATACTCGACCCCGACCTATGCGAT 347393 28 100.0 33 ............................ CTCATGTCTCAACACACTATTTGCGAGATCAAG 347332 28 100.0 33 ............................ CTCATGTCTCAACACACTATTTGCGAGATCAAG 347271 28 100.0 34 ............................ TCCGGGGCCAACTATTTGACCATGCTCACGGGAA 347209 28 100.0 33 ............................ CCACTAACCCGAGCACAGGACCAACGCCGCCAC 347148 28 100.0 33 ............................ CTAATTGGGACTCCTTCGAAGAGCATCCCAAAG 347087 28 100.0 33 ............................ CGAAAACGACGGCTTGACTCATGCCAAGCAGAA 347026 28 100.0 34 ............................ CTCTGGCGCACCGTCCGTACTTGTGGCCTACGGA 346964 28 100.0 33 ............................ CTGCCGCCAGAGGTCGTTGCCGATGATCGCATA 346903 28 100.0 33 ............................ CCCGGTAGGAAACGCCACCACCATCGGGATCGA 346842 28 100.0 33 ............................ CTGGATGACCACCTGGAGCAATGAAGCGAGTAG 346781 28 100.0 33 ............................ CGAGCCAATGGCGCTTGGGGCACGTTAGCGGAC 346720 28 100.0 33 ............................ CCATGATCGACCTCGACAACAAAGCTTAGGAGC 346659 28 96.4 33 ............C............... CTCCGGCGGAAAACCGATGTAGCCACCTCGGCG 346598 28 89.3 32 ..G.........C........A...... CTGGGAAATCGAAAACCAATACCTTATCGACG 346538 27 75.0 0 ........-...C....T...CG.G..A | ========== ====== ====== ====== ============================ ================================== ================== 47 28 99.2 33 GTTTTCCCCGCAGGCGCGGGGGTGAGCC # Left flank : CAGCTGTGGGATGGTTCTAGGAGGAACGTTGCTAGCGGTACCTCGTACGATTCATATGAGGAGGACTAACCGATGGTTGTCCTCGTGCTATCGGCTTGTCCTCCAGGGCTGCGTGGATATCTGACGAGGTGGATGTTAGAGCTCTCAGCCGGAGTCTTCGTTGGACATGTCTCTAAGCGCGTCCGGGATTTGATGTGGGAAAAGTGCGTCCTGATGATCGGTTCTGGTAGAGCCATTATGGTCTTCAGCGCACGCAATGAGCAGCGCATGGACTTCAAAGTGCATGGGCACCACTGGTCTCCCATCGACGTTGACGGCATTACGTTGTTGCTACGCCCTTCTGCTGGCGAAGGTCCGGTGGGAAACCCATCGTCGAGGGCAGGTTGGAGTAAGGCAGCGCAGAGACGGAAATATGGCGGAGGCAAGAGTCTTTGAAGCTCTGCCCTTCGAAGCTGAATAAAATAAGACTTATACCGCGATAACGTCGCAGGTCAAGAAGT # Right flank : AACCAATCCCGATTACGCAGACCCCACCCCGTATCCAGTCGGCTCCGCCGAACCCCAGCTTTACCAGGCGTAAGCTTCCGGCGCTGGTCCACCCGGACCCGGGAAGATTTCATCCAGCTTGGCCAGATCGGCTTTTTTGAAACGGATCTTGAGTGCATCCAGGGACGCGGTCAGTTGCTCCACGGTGCGCGGTCCAACAATTGGCCCGGTGACTCCGTCCTGGGCCAGCAACCAGGCTAGACCGACATTGGCCGGGTGATGGCCTAGCTCCTTGCTGAAAGCCTCGAAAGCCTTGATTTTCTCCCGATTCTGCGCCAGCAAGCCCTGCCGATAATCGTCCGCACCACGAACAGCGCCCTTGCCCTTCGCCAGCACCCCACCCAGCAGGCCACCGGCCAGCGGCGACCAGGGAATGACGCCCAGGCCGTAGTTTCGAGCTGCTGGAAGAACTTCGAGTTCTACATTGCGATTCAGCAGATTGTAGATCGACTGTTCGCTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCAGGCGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 365192-359908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBYQ010000002.1 Psychromicrobium silvestre strain DSM 102047 Ga0310551_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 365191 29 100.0 32 ............................. CGCCCCTATCGGTAACGGATCCGTGTCTCTTA 365130 29 100.0 32 ............................. TACTTATCGTCTTAGCCCTCGTCACTTCACTC 365069 29 100.0 32 ............................. TTATCGACCTGGGATACCTCGTAGTAGACGAC 365008 29 100.0 32 ............................. CGCAGCCGAGCTGGTGGTCAACGTCCTACGCA 364947 29 100.0 32 ............................. GTGCGATCATCATCAACCGGCTACTCGACAAA 364886 29 100.0 32 ............................. GGGTGAATGCGGCTGGCCTAGAGCTGTCTAAG 364825 29 100.0 32 ............................. TGACCCGCTCTGATTATGGAGAGTACCTACCC 364764 29 100.0 33 ............................. ATAATGGAGTGTTTGCGCAAGGGCATGAGTTGA 364702 29 100.0 33 ............................. CACGACCCGAACTCGCATCCTTGATTGTGCACC 364640 29 100.0 32 ............................. CAATCCTCTATCTCGCCCATGACTCAGGTCAT 364579 29 100.0 32 ............................. TTTTTGGCGCAGTCTGGACCAAGTTCAGAACC 364518 29 100.0 32 ............................. GCCAGCGGCTGGCAAGACCGGGGCTGAGGTTG 364457 29 100.0 32 ............................. GTGTCGAGTCAGCCCATTCCACGTCGATAGTC 364396 29 100.0 32 ............................. TGGGTGGGGTTCACATCAGCAAATGGGGTGGC 364335 29 100.0 32 ............................. TCAGCTAGTCGTGTCCTGCTGGTCGAGGTGGT 364274 29 100.0 32 ............................. CGAATTTCACCACAAGCGGATCGCTAATACGG 364213 29 100.0 32 ............................. GAACGGCGACCGGGGCATCTGGAAGGCCATTC 364152 29 100.0 32 ............................. CGCCGGGCAAGGGCTGTAGACATGGGGGTGCC 364091 29 100.0 32 ............................. TACGAGCTCGCCGTCGCCATTGCGCTCGACAC 364030 29 100.0 32 ............................. ATTGCGGCACCTGCTAGAAAGGTTTGGGGCGG 363969 29 96.6 32 ............................T GGTTGGCGGATCGCTGCTGATGAGGTTGCCGA 363908 29 100.0 32 ............................. TTGAAGTGTTGCTACCGCTACTTTGTTGTGCC 363847 29 100.0 32 ............................. GCCTTGCCCTGCGGCTGGCTAAGCGTCAGGCA 363786 29 100.0 32 ............................. AACATCCCAGACGGCATTCGGGTCGGGATCGA 363725 29 100.0 32 ............................. AGGGCTGCTTATCGGATGGGCGAAGGGTGCAG 363664 29 100.0 32 ............................. GGGGGCTTCGCCGTCGAAATTCGATAGGCAGC 363603 29 96.6 32 ............................T TTACTCGGACCCGTTGTCCTCCCGATCAATGG 363542 29 93.1 32 .............A...........A... CCGCGCCTTCTCGTGATCGTCCATGGATTCAA 363481 29 93.1 32 .............A...........A... TCGCCGCTACGTGGCTTCGTGAACGTGATTTT 363420 29 93.1 33 .............A...........A... GATCCGCCATGAAGTGGAATTCAACAACGGGAC 363358 29 93.1 32 .............A...........A... GATGTGATTGGAGGGCTGCGACCAGGCTGCCT 363297 29 93.1 32 .............A...........A... CATTCCAGCCGGGCCAAACCCGCCGAGCGCGT 363236 29 93.1 33 .............A...........A... TGCTACGGCTGCCTCTTCCCAGAGTTCAATGTC 363174 29 93.1 32 .............A...........A... CTCGGGGCAGTGGGAGGCTCGGCCAATACGTC 363113 29 93.1 32 .............A...........A... ACCCATTGCCCACCCGTTGCGAACCACGGCAA 363052 29 89.7 32 .............A...........A..A ATTGTGGAAGTGGCGGCGTCTCCAGTGATGTT 362991 29 93.1 32 .............A...........A... ACGAATCATTGCAACCGTCACGGTCGCCGGGG 362930 29 93.1 32 .............A...........A... GCACGCACAGCCGCCTTCTTCTCCTTCGCCCA 362869 29 93.1 32 .............A...........A... GCACCGTGCTGACTTATAGTGGCTGGTCTTAC 362808 29 93.1 32 .............A...........A... CGTGTGCCTGTCCAGATCGATGACCAGGAATT 362747 28 89.7 32 .............A.......-...A... TTGAGTGAGCGAAACACCGTAGTCGAGAGCTT 362687 29 96.6 32 A............................ TGTAAGGCTCCGCTCCCTGAGCCATCCGGCAG 362626 29 100.0 32 ............................. GGTGGTCACTACAGGCATGAGCGCATTGATGA 362565 29 100.0 32 ............................. GAAACGATCTATCGGTGATAAACCTAGTGAAA 362504 29 100.0 34 ............................. GAGCTCCAATTCCGGCGCACCCTCGCCCTCTTAA 362441 29 100.0 32 ............................. CGTTGCCGCCCTGCTCACCCTCACCGCACTAA 362380 29 100.0 32 ............................. AAGCAGAACACGTTGCCGAGTCCCTGACTAAG 362319 29 100.0 32 ............................. GCATACGCTACTGGGTCTGCTTATCGTAAGGC 362258 29 100.0 32 ............................. GAATATGGGTACGCACGTCAATGCAACCGGCA 362197 29 100.0 32 ............................. AGGTGAACATCGAGCAACCACGCGTTGAGCTT 362136 29 100.0 32 ............................. TAAATGCACGCGGGAGCAAGGCGGCTGGCGAA 362075 29 100.0 32 ............................. TTACTGAACGATTGATTGAAAAGTCTTGAATC 362014 29 100.0 32 ............................. CACAGATCCCGAGCCTCGGCGAGTTCCCTACG 361953 29 100.0 32 ............................. ATTTTCGGTGGCATTTGGAACACGATTGTTTC 361892 29 100.0 32 ............................. CGAAGGACGCGGCGGCTTCCTTAGCGGTCGAG 361831 29 100.0 32 ............................. GACGGGTGTGGGTGGGAGCCCGGATCCCAGGA 361770 29 100.0 32 ............................. GTGTCATTATTCGCGGGGTTCAGATCGGCTCT 361709 29 100.0 32 ............................. GGAACCCCCTGCATCCCCTTCGAGGAAGTTAA 361648 29 100.0 33 ............................. TGTATCGATTGAGTAGCTCCATCGTGCGCTGGC 361586 29 100.0 32 ............................. CGGAGCCAAGCCCGCCTTCAATGTTGGTGAAC 361525 29 100.0 32 ............................. ACAGGATGGGCGTTGCCCGGACGAAAACCAAG 361464 29 100.0 32 ............................. CAGAAGACAAGGCGAGTAGCGAGGCAGTACAG 361403 29 100.0 32 ............................. GCGGGGCAATTGTCTGCGTCAGATCCATTACG 361342 29 100.0 32 ............................. CTTGGACTTAGTGCGAGGGAGCAGCAAGAGGC 361281 29 100.0 32 ............................. GGCACATCAAAGGTGGCCGGTACTGCCGTGCC 361220 29 100.0 32 ............................. GGCGAGTTAGTGCCATGCAGGGCGGCAGCATC 361159 29 100.0 32 ............................. CGCTCCCAGCAGCCCTCGCAGACCGCCCACTA 361098 29 100.0 33 ............................. GCTAGAGCGTACCGGGAGGCGACACAGAAGCTT 361036 29 100.0 32 ............................. GGGCCTCAAACAACTCAAATGAAAGAACCATA 360975 29 100.0 32 ............................. GAGCTAAAGCTACCATTCATGCCCTGCTTGAC 360914 29 100.0 32 ............................. GCTGCCGAGGACTCTGCAATCATCTGATCTGC 360853 29 100.0 32 ............................. GGTCGCCCGGTGAATCAAGACGAGGTTCTGTT 360792 29 100.0 32 ............................. ATCCGGCAGATGGCTGCTAAGAAGCTTCAAGA 360731 29 96.6 32 ..........G.................. GGATCAGCCTTCGTACCCAGCCCAGTGGTGTT 360670 29 100.0 32 ............................. CGCATGCGTGCCACATCATCGTGGACAGGTGT 360609 29 96.6 32 .........C................... GAGACAGCCCGGAACGTCGCGGCGGGTATACA 360548 29 100.0 32 ............................. GACCGATGATCAAACCCTGGCCATGAAACTCC 360487 29 100.0 33 ............................. AACACCGCCCCTTACACGGAGCTTTACATCGAA 360425 29 96.6 32 .........................A... CGGTTACGCTATGCCGCGGGTCTGGCTGGATG 360364 29 89.7 32 ............CA...........A... CAGACGAAGGGCATTGCTCGCCGGGGTCGCGT 360303 29 93.1 32 .............A...........A... AGCCTGCGGGGACGATGGGCGGATGGTGTTCT 360242 29 100.0 32 ............................. GGCTCTAAGTGGTGGGTAGTCAAGCCCGAGAG 360181 29 100.0 32 ............................. AGATCCGGCACATCGAGATCAGCTGTATCGAC 360120 29 100.0 32 ............................. GCCGTCCTGACCCGCCTCTCCGCGCTGGAAGC 360059 29 96.6 32 ...C......................... TCGACGAGGGAATCAGCTTCGAAACCTACGAG 359998 29 100.0 32 ............................. AGCCCTTCCATCAAAAGGAAGGCCGCGAAGCC G [359976] 359936 29 93.1 0 ...........AC................ | ========== ====== ====== ====== ============================= ================================== ================== 87 29 98.3 32 GTGTTCCCCGCGTGTGCGGGGGTGAGCCC # Left flank : CGCCAGCACGTCGAATTCCGAGAGGAGCGCTAAGAGATGGCTAAGAAGTCCAAGATTGCTCGTAACGAGCAGCGCAAGGTCATTGTCGAGCGTTACGCTGAGAAGCGCCTCGAGCTGAAGAAGGCCCTGGTCAACCCGGAGTCCACCGACGAGCAGCGCGAAGCTGCCCGCCTGGGCTTGCAGAAGCTGCCCCGCAACGCCTCCCCGATCCGTCTGCGTAACCGCGACGCGATCGACGGCCGTCCCCGCGGCACGCTCCAGAAGTTCGGCATCTCGCGCGTTCGTTTCCGCGATATGGCGCACCGTGGCGAATTGCCCGGTATCAAGAAGTCGAGCTGGTAAAAACCTGCTCTAAGTAAGGGTGGTGGTCTTCGGGCTGCCGCCCTTACTTTGTTTAAGGGATTTCTGGTTTCTGGTTCGTCTTAGAGGCTTGGTTTTGCCTGCTGCTCAAAGTGATTGAATTCCTCTATGGTTGGAGGTAAAGCCGCAGGTCAAGAAGT # Right flank : AAGCTCACCAGGGCAAGCCGCGTCGGCACCGGCGTTCCCCGAGGGCTAGCCAAGGATAAATTTGAGCGACTCGACATCCCGTTTGAGGCGATTAAGCCAACTTCTCCGGGGTCCTCGATTCCTTTTCCTGCCAGTTCGTATTTCGCTATGCAGGTATATCGTCTACTGAACCGCTCGCGGGCGGTATAGAGCTCAGGTGGCGTCACCCACCGCAGGTTCTTGGCGAGCAGCACGGATGGAGTGAGGCGGTCGCTTCGTACTCGGGACCAGATCCTGAGGCTGACGAGGTCAAGCCAGGTGAACATCGGGGCGTTGTCGTCTCGTTGAGATCCACTTTGCTGGACCGGGCACTCGCCTAGGCAGGCTATGCGGGAGCTGACTTCACCGCAAGACAGCCATTTCTGGCTCTTTCCTTCTGCCAAATCCTAACTATAGTGATTATCTCCGTAACATACATTTTGAGCTAAAATATGTATATGAGTGAAATTACCATCACCCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGGTGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //