Array 1 1009-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020554.1 Parasaccharibacter apium strain G7_7_3c chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1008 29 100.0 32 ............................. CGCCCAATAACGGCGGCCAGACCATGAACCTG 947 29 100.0 32 ............................. ACACTGGGAACAACCGGATTCATATTGCAGCG 886 29 100.0 32 ............................. CTGTTCTGATTGGGGACTGTCTTATCGGCAGT 825 29 100.0 32 ............................. GAACTACAGGATACGCAGTAACTAATGCGGCT 764 29 100.0 32 ............................. AAGACGCCACGACACGCTGGGAGCGGGCAGAG 703 29 100.0 32 ............................. GGGCCGCCTCGGGGGACTATCTAGGGTTTAGC 642 29 100.0 32 ............................. CGTGCCCGCCTCATCGCCAATGACCAGAACAG 581 29 100.0 32 ............................. GCGGTTGATCCGACATGGATTTCGCCAGACGA 520 29 100.0 32 ............................. GTGGACCGCCAGACTGAGCATGTTCTGCCGAA 459 29 100.0 32 ............................. TGGTTGCCTTGGAAAGGAAAGGGCACCGCACC 398 29 100.0 32 ............................. CCCGGGCGGCCCGTGAAGAGCTGTCGCAGGAA 337 29 100.0 32 ............................. TTGGCGGCAACCTTCTGATTTGCGGCCTGTTG 276 29 100.0 32 ............................. CCTGGTCTCGTCCAATGACGTAACCTGTTTGC 215 29 100.0 32 ............................. TGGGAAGATGCTCCCATGAATCTGGCTGCCCT 154 29 100.0 32 ............................. ATACGGTACTGGGTATGCAGGACGGGCAGGCG 93 29 100.0 32 ............................. CCATCATGCGTAACGTAACGACAGCAGACATC 32 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 CTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : TCGTGTACTGCATGGCCCTCCTGCTGGAGCTGCTGCGGGGCAGGAATGAAAAAGGCGAGAAAATTGCGCTTCAGGAGCCGTTCCTGACGGCAGAACAGTTGAACATTGCTGCCTCTGACGATTTTGAGGCTTCCATCGGTCTGCCTGCTTTCGACAGCTGGCGTGATCTTCTGACCCCAGAGATTAAGCAGGAGATTGTGCGTGATCGGGAGCTGATCCGTCAGAAGGGTGTTCTGGCCAGCCTGCCCGTGTGATGAGGCGATGATCCGTTGAAAATTGATTGTGTGTAGAGAAAGGGAGGCTCCGGCCTCCCTTTTTCATGTTTGCTGTCAATCTTGTGGATAAAATTTGCTGGAGTGGTTTTTGGCTGTTCAGCGTCTCAACTTTCTTCTGTAAGGGCCGGAGAGGACTTGCCTCGGCGAGGTCATTAAAATTATATTTAATTCGGTAAGTTCTTTGACAATTAAAAAAGACTTATAATACAAATGGTTACAGGAAGT # Right flank : GCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 384622-383922 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020554.1 Parasaccharibacter apium strain G7_7_3c chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 384621 29 100.0 32 ............................. GCAACCTGATTGTAACCGGGTTCCGTGCCAGG 384560 29 100.0 32 ............................. CGATGAGAAAACGCCCATACAGGCCGCATTGT 384499 29 100.0 32 ............................. GCATCGGCAATCTGTTTTATAACCGTGATTGT 384438 29 100.0 32 ............................. GTTGCCCATGAACGCCCCGGCCTGAAACAGGC 384377 29 100.0 32 ............................. ACGAATGACCGTTTCCAGCTTTTGAAAGAGCA 384316 29 100.0 32 ............................. GCGCTGACATTCAACGGGCAGGACGTTGTCAC 384255 29 100.0 32 ............................. TGCGTCCATTTTCCCGGCGGGGATCATGGAAA 384194 29 100.0 32 ............................. AGAGAGCGGCAGCCTCTCTTCCTGGCATCTGG 384133 29 100.0 32 ............................. AAAGAAGAAGCTGTACGCCGAGAACGCAAAAA 384072 29 100.0 32 ............................. TCCATCTTGTTTTCCTTGGTTGTTGCGCTGTC 384011 29 100.0 32 ............................. GCCAGCTTCCCATCTGGCCCCCGGCTAACCTG 383950 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 CTGTTCCCCGCCCATGCGGGGATGAACCG # Left flank : CTGGAGAGAATCATTCCGACCATTGAGCAGGTTCTTTCGGCTGGCGGTCTGCCTCGCCCCGAGCCCCCACCGGAGGCCGTGCCCGTCGCTTTTGAAGATGAAACCTTTGGCGATCCGGGGCACCGTTGATGCTGGTTGTGGTGGTCACCAATGCGCCACCCCGCCTGCGTGGCCGTCTGGCAGCATGGCTGGTGGAAATACGGGCTGGGGTCTATGTGGGCAGCTACTCCAGACGGACAAGGGAGATGGTCTGGGAGCAGGTACTGCTTGGCCTTGGGCCTGAGGGTGATGCTGTCATGGTTTGGCATGTTCCCAACGATCAGGGATATGAGTTCCGTACAGCTGGTCACAATCGCCGGATGCCGGTTGATTTCGATGGATTGAAACTGGTTGCTTTTCGACCGGAATAAAGCGAAGGAGTGAAGTATTAAATTCTGGTTTAAGTTGGTACGGTCTTTGACAATAAAAAAAGTCATGTCTTACAGTACGTTGCAGGAAGT # Right flank : TCTTCATGAAAGACTCCCTGGGAACAGCTGGGGACCAGGGGAAAGTCCTTAAAAAGCTGGAAGAGCAACGTAGAGAGGCCAACAGACTCATATTGAGGATGCCGGGGTATAAATCAAGCGAAGTCACCCTATCCGGCTATGAGTTCGACCGCACATCTCAATCAGGGTGCGACCTTCTTATCGTCAGAATGACTTTGTAGGAGGTGCGTTTCAATGCAAAGCGCAAGGTCATCATGAAAAGTGGGAAGCCCGCAGAACCAGAGGATATGGGAGGAAAAATACCTTAGAAAATTAGTGGGTAATCCACTCATCGCCAAGAGAGAACGTAAGTATTTTTGTACCAATGCCATTCTTGTTTAGTTCGGTATGAAAATTATCTTTCTCCCAACAAGCAGATGAAAGATACCGTTTTGAGGCATCCATAACCTCTTGGGATGTTCCTTTTTTGGGGACAAGGTGGCATCCCTTCACTCGCCAGTAGTTGTCATCGCCGAGTGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1114531-1114134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020554.1 Parasaccharibacter apium strain G7_7_3c chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1114530 29 79.3 32 .....GT....AG.A..C........... TTCCCCGCCATTCGGCACGGCCGCCATCTCCA A [1114512] 1114468 29 100.0 32 ............................. AGCTGCTTGACTACGCCAACGAGCGCAACCTC 1114407 29 100.0 32 ............................. CGCCCGGAAAAAACAAACCCCACCAAAAAGGC 1114346 29 100.0 32 ............................. GGGACTACACCCGGGAATGACGCTCCATCGGA 1114285 29 100.0 32 ............................. CCGAGGGGATGCCGATTGCTGTTTTTTTGAGA 1114224 29 100.0 32 ............................. TGGCGGCTACCACCACATCCCCTGCTGCCCTG 1114163 29 93.1 0 ......................CA..... | T [1114136] ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 CTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : TGCCGGACAGGGACCCGGCATAGGTATCCTTGGCATTGGTCAGAGTCAGGGTGCCATTGAGAACACCATTCCCAGACCCGGCAAGGGAGCCGGCATCAGAACCATGATCCGTGACGCTGAAAGATCCGCCATTGGCCGCCAGCGTCCCGGCAATCTGGTTCCCGTCAAGGGTCAGGTCACCCCTGCTGTTGGTGACATCACCCGTGACATGGTTGCCTGCACCCAGCGTCATGCTGCCGCTGTTGTCCGCAGAGGCCAGAGTGCCACCCATCGCCTTGAAGGTCGCCCCGTCAGCGTTGGTCACGTGACCAGCCGTGCTGTCTGCCAGAGAGGCCGTACCAGCCTGGTTGGCAACATCGGCCAGCGTGGCGTTCTGTGCCGCCAACTGACCATGGTTGGCCGTCGTCCCGGCAATCTGGTTCCCGTCAAGGGTCAGGTCACCCCTGCTGTTGGTGACATCACCCCTGACATGGTTGCCTGCACCCAGCGTCATGCTGCCG # Right flank : GTGCCAGACCGCCATCACTGGCCTGTACCGAACTGTTCGCCGGTGGGTCATGGGGTGGTTGGTGGCATATGTGGTCGCCAGAGCCATTCCAGAGCTTCGGGAAGGGTCTGTTCGATGGTGGGGCCATCCACATGCCGGGCATTGCGGGCAAAGACAAATTGGTAATCATAGCCCTTGTCGGCCAGCACGCGGGCCATGTTTTCCCCAGCCAGCACCCAGTCATGCATGCCATCAGGCATGGACGGAACGGGGTAGAACAGGTCCTGGTCGCCTACTTCGTACCAGATGTGCAGCGGGGCCAGTGGTGCCGCCGGGATGAGCGCCGCACCGGGATGGGGGGGTACGGCTTCCGGTGTTCCGGCCCATGGGGAGTGAAGCTGCCATCCCCCGCCGGGCAGGGCGGGGTCATGCGGCCATTGCTGGTTGACAAGTGAAGGAGAGTAGGCCAGCACCCGGTGATAGAGGTTGGGCCGGAACCAGGCCATGGCAAAGGCCGCTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 2003572-2002567 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020554.1 Parasaccharibacter apium strain G7_7_3c chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2003571 29 100.0 32 ............................. TTGGCGGCAACCTTCTGATTTGCGGCCTGTTG 2003510 29 100.0 32 ............................. CCTGGTCTCGTCCAATGACGTAACCTGTTTGC 2003449 29 100.0 32 ............................. TGGGAAGATGCTCCCATGAATCTGGCTGCCCT 2003388 29 100.0 32 ............................. ATACGGTACTGGGTATGCAGGACGGGCAGGCG 2003327 29 100.0 32 ............................. CCATCATGCGTAACGTAACGACAGCAGACATC 2003266 29 100.0 32 ............................. CGAGCCTAGCCCGTCCGAGAGGGCGGATATGG 2003205 29 100.0 32 ............................. GGGCCTGATACGCCGCCAGACTGCAGCTGTGT 2003144 29 100.0 32 ............................. AGCAGCCAGACAGTCACGACAGAGGGTGGCCG 2003083 29 100.0 32 ............................. CCATCAACTGGGCGAAGAAACAGCGTGTCAGT 2003022 29 100.0 32 ............................. AAACGGACCCGGTAGATACGTTCCTCCGTACG 2002961 29 100.0 32 ............................. TTCCCCGCCATTCGGCACGGCCGCCATCTCCA 2002900 29 100.0 32 ............................. AGCTGCTTGACTACGCCAACGAGCGCAACCTC 2002839 29 100.0 32 ............................. GCCCTGCACAGCTCAGCGGCGCAAGGGAAAAA 2002778 29 100.0 32 ............................. CGCCCGGAAAAAACAAACCCCACCAAAAAGGC 2002717 29 100.0 32 ............................. CCATCAACTGGGCGAAGAAACAGCGTGTCAGT 2002656 29 100.0 32 ............................. AAACGGACCCGGTAGATACGTTCCTCCGTACG 2002595 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 CTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : GCTGACGTCCCTGACGATGCTGTCATTCAGGGTGACGGTCCCCGCATTGGTAACGAGATTGGCCAGTCTGGCTCCGTTCGCCACCAGTGATCCATCATTGTTCGTGACCGTTCCGGTGACGGCTGAACCATCCTGGAGGGCGGAGTGGCCGTCATTGTTGAGGGCCCCGGCGAGGGAGCCTGTCAGGGTGAGGCCTGCATCCTTTTTGACATCCGTGTCACCGGTATAGGCCTGATGGTTCGTGAGGGTTTCGGTCCCGCCATCGATGGTCAGGCCACCCTTGCCGGAGAGGATACCGTTATAGGTGTCACTGGCCTTTGTCAGGGTGAGCGTGCCATCCAGCGTGCCGTTGCCGTTTCCTGCGAGGGACCCGGCGGAGGCATTGTTGCTGGTGACGGTCAGGTTCTGGCCATCATGGGTGAGGGTACCGCCGATGGTGCTGTTGTCGAGTGTCAGGGACCCGTTGCCCGTATTGGTGACAGCACCATCCGTTTTGTGAA # Right flank : TTCTGCACCATTGTTGGTGATGTCAGCCAGCGTGGCGCCATTGGAGACGTTCAGCGTCTTGTTGTTGATGGTGGTGTTCTTGACCTGCGCATTGGGTCCTGAGACCTGGGCATACTGGTCGTTGACCAGCCTTCCGGCGATGGACCCTGTCAGGTCCAGCCCGGCCCCTGCGGCACTGGTCACATGGGTGTCGCCGGTATAGGCCTGATGGTTCGTGAGGGTTTCTGTTCCGCCATCGATGGTCAGGCCACCATTGCCGGAAAGAGACCCGGCGTAGGTGTCACTGGCCTTTGTCAGGATGAGCGTGCCATCCAGCGTGCCGTTGCCGTTTCCTGCGAGGGACCCAGCGGAGGCATTGTTGCTGGTGACGGTCAGGTTCTGGCCATCATGGGTGAGGGTACCGCCGATGATGCTTCCATCGAGTGTCAGGGATCCGTTGCCCGTATTGGTGACAGCACCATCCGTTTTGTTGCCCCCGGCGAGGGTCATGACGCCGCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //