Array 1 2921-1169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESMJ010000090.1 Staphylococcus sp. GDX8P74P GDX8P74P_contig_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2920 36 100.0 30 .................................... TGGGTTCTGTACTGTTATACCATACATATA 2854 36 100.0 31 .................................... AGATAACGGTTATCCGTTAGATGTAAATGTA 2787 36 100.0 30 .................................... GCTTTACGCCTTTTATTGTTGCTTATGATT 2721 36 100.0 30 .................................... TGGAGTCTTTCTGCATTGTTCTATATCACT 2655 36 100.0 30 .................................... TTGAAGTACAATGTAATGCGTCGTATATGG 2589 36 100.0 30 .................................... CGTACTAAAGCATGGCGTATGAAGCGTAAA 2523 36 100.0 30 .................................... TTGCATTCTTACTTCCATGCGTTGATTCAT 2457 36 100.0 30 .................................... AAAAGGGATCAGATTACCCCTCACTATTTA 2391 36 100.0 30 .................................... GAGCGTTTGGAGATTATCAAGCGCAAAAAG 2325 36 100.0 30 .................................... ACTATTACGCACGTATGGGGTTTGAAGTGA 2259 36 100.0 30 .................................... TCTGCTGTACCTTCAACATCAATCCATACT 2193 36 100.0 30 .................................... GACCTGACTATAATGAGGTAGCTGTATTAG 2127 36 100.0 30 .................................... CGATTAGACGTGGTTCTCGTAACTTACGTG 2061 36 100.0 30 .................................... ATAAATACCTTTCATCTTTGCCACCCACGT 1995 36 100.0 30 .................................... TACGAATCACGAATGGTTAACACTAGCACC 1929 36 100.0 30 .................................... TTGAACAACTGTACAGCAGTCACACCTTAT 1863 36 100.0 30 .................................... CTAGGACGAGTGATGGAATGCCACCATCAT 1797 36 100.0 30 .................................... AGATATAAAGATCCAGGCGTACAGCTTACA 1731 36 100.0 30 .................................... CTGTCAATTGGTTAACTCAAAAGCGATATA 1665 36 100.0 30 .................................... GCAACACCTTATGTATCACACCCAGACGAC 1599 36 100.0 30 .................................... TATCAACTTTATGTTATACTACTAAATGAG 1533 36 100.0 30 .................................... CCAATAAGACTAAGGGTATGAGTACACGTG 1467 36 100.0 30 .................................... ATTACATGCCAACAATAAAATACACACGAG 1401 36 100.0 30 .................................... TATAGTGCTTTACATCAAGTGATGCCTATT 1335 36 100.0 30 .................................... TTTAGTCATATATAAATTAGATCGTTTAGG 1269 36 100.0 29 .................................... TGATGTACATACCATGTACACTGCCCCCA 1204 36 97.2 0 .............................A...... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.9 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Left flank : ATAATCAAGCAAAAGAAAAAGCATTTGTAATCTATTTATATCCAGAAGCGGGCCTTAGCATTAAAGAACAAATAAGATTTAGGAAAATACTAAATAACTTACCTGTTCCGGTCATTGTTTTAACAGAATCACCACGATTTTTATCTGAAAGTATTAAAGGACTAAATTATTTTATTAATAATGTTCAAATGATTAAAGAATCTTTTTTTGAAGATAGCTATTGGAATGCACCAATTAATGTAGAAAAAGAACAGATTGAAGAGAGGTTTGAATATTTATTTGTAAAATATTGTTCAGTTTTAGAAATAAGACCGATTATTTCTAACTATTTGCTTGCGGATATCATTGTTTTTAATGATATTGATCTTTATATCATTGTTTCATTTTTAAAACATTGTAATTTAGAGTATCAATTAGATATTGATAAAGCAAAAATTTCATTAGCTTTATGGTCATATTTATTTCCTTAATTATTATTCAAGTATATAATTGGGCTAGAG # Right flank : ACACTTCAGCTGAATCGTACAGGATATATGCATAATCGCTTACGAATGATCGTATCACAATTTTTAACGGAAAATTTATTGATTGGACTTGGGGAGGAGTACTTTAGACAGTATTTGATAGATTATGATAATGCATCTAATGTACATGGATGGCAGTGGTCAGCATCAACTGGAACAGATGCAGTGCCTTATTTCAGAATGTTTAATCCTATACGTCAAAGTGAGCGTTTTGATGCGCAAGGGTATTTTATTAAAACACAGCTAGAAATATTTAATGATGTGAGCAGTAAATACATTCATGATCCAACTAAATATAAAGACAAGTTACAAAAAATTTATCATATTGAAATTGGAAAAGATTATCCACAGACTATCGTGAATCATAAAAATAGTAGAGATTATGTTATGGATAAATTTAAGCAATTTTGACATATCATCCAATAAAAAGGAGTGATTCATTTGTTGAAAAATGAAATACATCGTATTTATTTAGACAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //