Array 1 135475-137108 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUX01000009.1 Clostridioides difficile strain WCHCD15116362 NODE_9_length_137994_cov_87.7165, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 135475 29 100.0 38 ............................. TCTAAATACACCCCTTCACTTAATCTCTACTTTGAAAT 135542 29 100.0 36 ............................. TACTGAAGAGTACATTGTTTCTCATGTTAGTTTCTT 135607 29 100.0 37 ............................. AAAGTTTTACGCATTGTATGTGTGCCTAGATTATCTA 135673 29 100.0 37 ............................. ATGCACGAAAAGCCTTTTAAGTCTGGTAATTCTTCGT 135739 29 100.0 37 ............................. TGTACCTACCTCGGTTCACATATTTTTCTTCAACAGC 135805 29 100.0 37 ............................. ACATTCGTCGTCATTTCTGCTTCATCACTTTGTAATA 135871 29 100.0 36 ............................. ATCATAAGAACCCGGAATATAAGGAAGATCATAAGC 135936 29 100.0 36 ............................. CTCAATCAAAAAATTCTTGATTCACGTAAAAGACGA 136001 29 100.0 37 ............................. TTATATAAGCACTCCCTCAATAGCTTCCTTAAGTATC 136067 29 100.0 37 ............................. ACAAATATATACTCATCATTTATACGCTTATATCCTC 136133 29 100.0 38 ............................. CTAGCAAAATTTGATAAAAGGTACTATTATTGTAGTAT 136200 29 100.0 37 ............................. AGGGGAATTATCTCCACGCATGTATATAAGGACACTT 136266 29 100.0 37 ............................. CAAAACGAGGTTGAAAAAATAAACGAAATTGAAAAGG 136332 29 100.0 37 ............................. TTCAGCACCTAGGTCAAGCATAGATTTTGCAACTGGA 136398 29 100.0 37 ............................. GTTGATTTAGCTGCCATATCTATCTTTTCAGCTTCAT 136464 29 100.0 37 ............................. CCGTTTATGCTATAATTAGCTTAATTAAATTTTTTAA 136530 29 100.0 36 ............................. AAGAATTTGTAAATAATGTAAAAGATATAAAAAATA 136595 29 100.0 37 ............................. AAGGTCTACTTCCTGTTTTGAATGATTTGGCAAATAG 136661 29 100.0 37 ............................. TTCATATTCCAAACATTTTGCTTACACTTAATCGAAA 136727 29 100.0 37 ............................. AGGAAACGTTGAAACGGCAGTTGTTTCACCTTTTACT 136793 29 100.0 61 ............................. TATTAACTATGTGGTATGTAAAGATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 136883 29 86.2 38 A...............G...T.......G CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 136950 29 79.3 36 A..............AG...T......GG AACTCTGCAAAGCTAGATTTTAAGTTATCAAAAACT 137015 29 86.2 36 A..............AG...T........ TCTTTAAAAGCATTGAAAGCATCACTCATACATTGT 137080 29 79.3 0 ...............AG....T.CA...C | ========== ====== ====== ====== ============================= ============================================================= ================== 25 29 97.2 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : CTAAATAAACAAAGGAAGCACTTACTTTTTGGTAGGTGCTTTTATTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGGAAAAATTGGTATAAGTAATTGACTTTTGTTGCCACATAAATTATAATATATTTGTAGCAACGAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGACAAAGATACTATTGATAAGTTAGATGAATGTGTGAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGTTCGCCCGACCAAGTTTGAACACTCTATTTAAACACCAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGATTGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 60249-61598 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUX01000014.1 Clostridioides difficile strain WCHCD15116362 NODE_14_length_123565_cov_62.4183, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 60249 29 100.0 37 ............................. CACTCCTGTTTATGTTATAATAATCTTGGATAAAAGC 60315 29 100.0 36 ............................. AAACTTTTGGTGTCGCTTTTATACCTAATTTATCAA 60380 29 100.0 37 ............................. TTTTTTATGCAACCCTTTTTTGGGGTGCAGTTGCGAG 60446 29 100.0 36 ............................. ACTTCTCGTATTATCTTATAAGCCATGACTCTGCTT 60511 29 100.0 36 ............................. TAAAATATTCTGGGATTTAAATCCCGATAATCCTAA 60576 29 100.0 37 ............................. CAGGACAAATTTAATAAATATGCAATAAGAGCAACTA 60642 29 100.0 38 ............................. TTTAAATATTATGAACTAGAAGAAAATGAAAAGAATAA 60709 29 100.0 38 ............................. TCAATGAAACAATGGTTACTTATTAAACTATGTGTCGT 60776 29 100.0 38 ............................. CCTTATGAATTTAGTTTTACTAATTTTAAAATAGTTAC 60843 29 100.0 36 ............................. AAAGATTATCAGAAGAATTAATACAGACTGAAGATG 60908 29 100.0 38 ............................. CGGAGTATTGTAATAAGCAATAAAAGCATACCTATTTG 60975 29 100.0 37 ............................. CTACTAAAATTATAAATACTATTTGATACTAAATTCT 61041 29 100.0 37 ............................. TGTTTATTATTTATAATATTTTCATTTAATTTATCTT 61107 29 100.0 37 ............................. TCCTTCAATCTTGATTAATCCTTCTTCTGTTATCCAG 61173 29 100.0 37 ............................. GCTGGTAAGTTTGATTTTATATCATGGTAGTAAGCAG 61239 29 100.0 37 ............................. CTTATAGTAACGTCCATTAAATAGCTATCTTTTGCTC 61305 29 100.0 37 ............................. GAAAAATTTATTTTAAATAAAAGAACTAGCGACTCAA 61371 29 100.0 38 ............................. AACGATTCAGTATCTTGTTGCAACCCTTGACCACTTTC 61438 29 100.0 37 ............................. CATGAACATTCTCTATAATATGTGTGTTCTTCAACTA 61504 29 100.0 37 ............................. GCTGTATTTATAATTTTTTATATTTGAGTAAATTAGC 61570 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATATGATGCTTACTGACATAAAACTGAACGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTCTTTATCCATATCGTCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAGAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATAACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATAAATATTCATACTATAATTTAGATATAAGGAGATGTCCTTATAAACTTAAAGGGTTTGTACTATTTGTACTATAAGTATTGATAATCTTAAAGTATATATACTATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATATTAAACAACACAAATATCAAAATTTAATATTGATATAGGTATAAACATTATAAAAACAACTGAAAATAAAAATCAAGAAATATTTAATGCTACTACAATAGGAACTAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 100813-100052 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUX01000001.1 Clostridioides difficile strain WCHCD15116362 NODE_1_length_346976_cov_66.8485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 100812 29 100.0 37 ............................. TCATTAAAATTATTAAATTTTATTTTTTTCATATCTA 100746 29 100.0 37 ............................. TCGCTCTTCACTGAAAAATTTTTTCTTTTTTTCTTGA 100680 29 100.0 37 ............................. TCATTTGTAAGCGGTGCCATAATTTCAGTTCCTAATG 100614 29 100.0 40 ............................. TGGTGTTCCTCCTAATATCTACGCATTTCACCGCTACACT 100545 29 100.0 37 ............................. GCACCAGAAAAGAAACCAGAAAGCAAAAAACCATTAA 100479 29 100.0 38 ............................. TAATGGTGACGCTAGACAAGCAGAAGTTATTATTATAT 100412 29 100.0 38 ............................. TAATTAATGGTGTTATTAAGTCAAATTTTTGATTTTGC 100345 29 100.0 37 ............................. ATTTTTGTAATATTATAGAATCATCCTAAAACAAAAG 100279 29 100.0 38 ............................. CATAAAGAAAATTCTTCTAAGATTGAAATATATAATAG 100212 29 100.0 37 ............................. GAGCTTCTATTCCAGTCATATGTATCACATCCTTTTT 100146 29 100.0 37 ............................. CCTGCTGTTACATATGCTTCTAACATTTGTTGCATAC 100080 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 99.7 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGTAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGAG # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 209727-208573 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUX01000001.1 Clostridioides difficile strain WCHCD15116362 NODE_1_length_346976_cov_66.8485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 209726 29 100.0 38 ............................. AGGCATACGTTTTAACAGAATTTGGAGAGAGACATATA 209659 29 100.0 37 ............................. ATTAAATTTGCATATTCTTCAACAATTTTCTTTTGCC 209593 29 100.0 38 ............................. TAGTCTAAGACCTGTCCAAAATAAAATTTCAAATGCTA 209526 29 100.0 37 ............................. GGGCTAAAAGAAAAAATAGAGAAAAATATATCTGAAC 209460 29 100.0 37 ............................. AACAATAGGCTACTGGCTCGGAATGAATTTTTTTTCA 209394 29 100.0 36 ............................. CTGATTTTATGCAATTATATATTTCTCCAGTTCTCT 209329 29 100.0 36 ............................. TATAAATACAACAACCACACTCTGCATCACATTTAA 209264 29 100.0 37 ............................. GGAATCCCTTGGAAGGCAAAGTCAAAAATAAACATTC 209198 29 100.0 37 ............................. CCTTATACAATGAATTGCATAACATCTTATGGTATTC 209132 29 100.0 38 ............................. AAGATTTTTCCTAACAGATGGTTAGAGGGAGATATAAG 209065 29 100.0 38 ............................. ATAAAAAGTCTCACGATAGTCTCCAAAAAGTCTCAAAA 208998 29 100.0 38 ............................. TGCACTTTTACACCTTTTTGGTAAGCATACTCAACCAT 208931 29 100.0 37 ............................. ATTGGTCTTGCAATTGGTGGTGCCTATTTGGTTTGGA 208865 29 100.0 38 ............................. AAAATCATGATTATGTTCTAAATAGTAATCAAGAGATT 208798 29 100.0 37 ............................. CTAAAATATCTTTCAACCTTTAACATTTCAGCCCCCT 208732 29 96.6 36 ...............A............. CCTCTCAAAGAAGTAACAGGTGAAGAACCTTCTTAA 208667 29 93.1 37 ...............A............T AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 208601 29 69.0 0 ......C........AAAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 97.7 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTATCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 73294-74897 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUX01000004.1 Clostridioides difficile strain WCHCD15116362 NODE_4_length_200974_cov_82.0409, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 73294 29 100.0 37 ............................. TCTTTGCTTTTTGCATTATTTGTGCGGAACTTTAAAT 73360 29 100.0 37 ............................. TTTTTAACACGAGATTATTTGAGTTCAGCAAAAGAAA 73426 29 100.0 36 ............................. GAAATTTGACTACTTCCTACGATATTTTCTTTGCTC 73491 29 100.0 37 ............................. TCCTTATATTTCGTCTTTTCTTTCATCTACAAGAACA 73557 29 100.0 38 ............................. GTATATATTTAAGTTCTTTTGTTAATCTTCCAATTAAA 73624 29 100.0 36 ............................. CTTTTTAAGTTTTTCCACACAATCATATGGTTGTGG 73689 29 100.0 37 ............................. TCGGAGTTCTTGCAATAGCTTCTCCTTTGCATTTTCC 73755 29 100.0 37 ............................. TTTTCTTTTAGATATTTTTTATGTGCTTCTATATCTA 73821 29 100.0 37 ............................. TAGAAATACAATTCGGAACTTGTTTCTGTTGAATTTT 73887 29 100.0 37 ............................. TAACAAACCTTGTTTTTCCCACAAATCGTATGGAATT 73953 29 100.0 37 ............................. TCTACAATCGCTTTCGCCAATGCTGCACCCATTTTTT 74019 29 100.0 36 ............................. CTTGCTTGGTAAATCATAATACTCAATATCTAAAAT 74084 29 100.0 37 ............................. GATTTAGATGTCTATTTTAAAAATCGTTCTGATAATA 74150 29 100.0 36 ............................. CCTTTTGCACCTTACACTCTTATAAGACAGATAAGA 74215 29 100.0 35 ............................. ATAGATAAAAAAGTAGAGTTTATAATATCTGGAGA 74279 29 100.0 39 ............................. TTGCGTCAATACTTTTTTTGAAAGAATTTACGTGGTATA 74347 29 100.0 37 ............................. AGTTTAGAAATAGCGCATAAAATCTCGCTCGAAACAG 74413 29 100.0 37 ............................. AAGAGGAATTAATATAAACTGGGAAAATCATAAAATT 74479 29 100.0 37 ............................. TCTTTCACCCCGAAGACCTCTTGTTTTAAATTAAATT 74545 29 100.0 35 ............................. CTGTTTTTATAGTAGTTATAGTGACTATACTTGAT 74609 29 100.0 36 ............................. TCATCATAACATTTCGTAGGAATATAAATAGTGTTT 74674 29 100.0 37 ............................. GAATTAAAGTGTATAGATATGTCTAAATCAACTTTAG 74740 29 86.2 36 ......................GA...GT AGAATATTAGCAATATCAACGAGTGTTTAGAAACTT 74805 29 75.9 35 ............TA...CA....A...GA TTGTAGAATCAACAATAGCATATACTAAATCAGCA 74869 29 72.4 0 ACC.............A.CA...C....T | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 97.4 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : TAAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGGTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 401-1420 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUX01000045.1 Clostridioides difficile strain WCHCD15116362 NODE_45_length_7554_cov_59.0904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 401 29 100.0 38 ............................. ATAGTTTTCAAAGATGGAAATATGAACGAATGGTTAAG 468 29 100.0 36 ............................. TGACTCTGCTTATAGCTTTATTAGTCTGCTCTCTAC 533 29 100.0 38 ............................. TAGTAAAAATGGAGATTATCATTTTTGTGAGTTTATAG 600 29 100.0 36 ............................. TGATAAAATGACTATAATTAGAAAATTAAAAGGCTG 665 29 100.0 37 ............................. TTAATTACCTTCAAAATTCATATATTTTAAAACTTCC 731 29 100.0 35 ............................. ATTCAACTTGGATTGCTTTTTCAAATTCAGCTAGA 795 29 100.0 42 ............................. AAAAAATAGAAATGAGGTGATAAAGTTGGCAGAACAACAATA 866 29 100.0 36 ............................. TCATATCAGAATCATTCGGAGTAAATCCGAAACTCA 931 29 100.0 36 ............................. ACAAAAACATCACCAGAAGGAACTCCTATTAAATCA 996 29 100.0 37 ............................. TTGCAGGAATGTCTGTTGCTATTTCTAATAATAAGGT 1062 29 100.0 37 ............................. AAAACAATTTTTCACATGTTCTTTCTTACCATTTTTA 1128 29 100.0 37 ............................. GTTTCAGCTACTCATTGGATAAAAAGAAAGTATTTTG 1194 29 100.0 37 ............................. AATTTATAGAAATTCTTATAGCATCAGTTGTTTCTAT 1260 29 100.0 37 ............................. TAACATATTTTTCCAATAGATTTAGTTTTTTATTTAA 1326 29 89.7 37 ......T.........G...T........ ATGTATATCCCAGCAATACTTTTTAGTTTAGACACTA 1392 29 82.8 0 ......T.........G....C.TA.... | ========== ====== ====== ====== ============================= ========================================== ================== 16 29 98.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATGAATATAATTTAAAAACTGATGAAGATGTAGAATACTTTGTGAAGTTTGCTAATGCGTTATATGAACTAAAACAGAATAGCGAAGAAAAGTTTCAAGAATATGCAGAGATATTAAGAAGTATTCTTAGGGAACAACAGGAGAGAGAAAATAAGTAAAATAAATAGATAAAGTACTTGGATATTATGTTGTTTCAAGTGTTTTATATGGTGAAAAGTGGTATAATAGAGATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAATACTTGAAATATAAGGCATTGAGAACGTATGATAAGTGTTATCAATTGCACTATTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGGG # Right flank : TTAAAAATAATTAAAAAACACTTACTTAGGTAGGTGTTTTTTTAGTTGAAAGTAGGTGATTATAACGTAAAAAGTAATAAACAGGTAAAATATGTAAGTAATATATGATATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTATATGTATGGATAATTTTTTGTTTAATGTTTTGGCTAGTTTAACAGCTAGTATAATAGTTTACTTAATTAGTAAATTAATTAAAGCCAAAAAAGCAAAAAGCCACTCTCGCCCAAAGAGTGACTTATTAGTTGAATTTAAATTTCTATTTAAATTCAAAAAATGATTAAGTTCTAATTATGAACTTCACTCTACCGCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 2072-3684 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUX01000045.1 Clostridioides difficile strain WCHCD15116362 NODE_45_length_7554_cov_59.0904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2072 29 100.0 36 ............................. TCTACAATCAACTTAGCAATACCTTCATGACCTAGT 2137 29 100.0 39 ............................. TTTCTTAATCCTCCTCGTTTTTCGCAAAAAATAAGAATC 2205 29 100.0 38 ............................. TAATTTTCTGCTGAGTCAACTTTAGGTGATATTTTCAC 2272 29 100.0 37 ............................. TCTAAAACACCCATTCTATACGCATATTCTTTTTCAA 2338 29 100.0 37 ............................. GCTAGAGGGGCATCTTTGAGGATTTTAGGAAAATTAG 2404 29 100.0 37 ............................. TATGTAAGCAGAGACAAAATAGAAGTTGATTATGTGC 2470 29 100.0 37 ............................. TAACATTAGGGTTTTCTCTTGTTATGCCCATTTCATC 2536 29 100.0 37 ............................. TTCATAGACCAAGCGTTCTGCTTACACTTAATAGAAA 2602 29 100.0 37 ............................. TGTATTTGTCTAACACGATACAAAGCAAAAAATAAAG 2668 29 100.0 37 ............................. TCCGCATATGGAATGTAAATCCTAATGGTACCAGAGG 2734 29 100.0 38 ............................. GACGCAACAGCAAGAGTTGCAATAACATTGACAACCTC 2801 29 100.0 37 ............................. CTATGTCTATATGTTTCTTAATAGTATAAACTCTTAT 2867 29 100.0 37 ............................. CTAAATCTAATAGCATATTCAAGATGTTTTTCTTCTC 2933 29 100.0 36 ............................. ATTCATATATTAGATTTAATTTTCCTAATAAAAGTA 2998 29 100.0 37 ............................. ATATAAGAGCTTATTATACTAGAGCGACTTGGGATAG 3064 29 100.0 35 ............................. CTGAGAAGCGCTGTCACAAAACACTGTGTAAAAGT 3128 29 100.0 37 ............................. ACAACTCCTGCTATAATTGGACCTATTATACTCCAGT 3194 29 100.0 37 ............................. GGAACTTATTATGGAGCTTGGAGAAACGGGCCAAGCG 3260 29 100.0 37 ............................. GCTCTTGTCGCAGTTGCTCCTGAAATTATTGATGTTG 3326 29 100.0 38 ............................. ACTTACTTACAACAGCAAATTTATCACCTATTTTAAAG 3393 29 100.0 37 ............................. TGTTTATTATATTATCATTGCGTCACCTTTGCGTCAA 3459 29 100.0 37 ............................. ATTTTTTTGAAAGAATTAAGTGAAAGTATAGAAAATT 3525 29 100.0 37 ............................. TTTACAGAAACTATAAGACTATCTCCTTTTTCTAACT 3591 29 93.1 36 ...............T....T........ AGCGCATCCGCTGCGTCTTTAGCTGTTTTTGATGTA 3656 29 75.9 0 A.....T........T.....T.CA...C | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 98.8 37 GTTTTAGATTAACTAAGTGGAATGTAAAT # Left flank : GGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTATATGTATGGATAATTTTTTGTTTAATGTTTTGGCTAGTTTAACAGCTAGTATAATAGTTTACTTAATTAGTAAATTAATTAAAGCCAAAAAAGCAAAAAGCCACTCTCGCCCAAAGAGTGACTTATTAGTTGAATTTAAATTTCTATTTAAATTCAAAAAATGATTAAGTTCTAATTATGAACTTCACTCTACCGCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGTTCGATTTCTTGAACAAAATAGGGCTTAAGCATTGAAATGTAAGGTATTGAGAGTATATGATAAGCATTATCATTTGCACTACTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGAAAATACTTAGTTTATTTTGGG # Right flank : CTAAATAAACAAAGAAAGCACTTACTTTTTGGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGAATTATTGGCAGACATCAATTATAATAATAAGTGTCAGCCAATAATTATACAGGAGGTGATTACTATAACTAAAAATAAGGTTGGCAGACCTAAAACGGAAACTGCTATGAACAAAAGGATTACAGTTAGATTAGATAGTAAGCATGAAGAAATTTTAGAAACATATACAAAAAAATATAGCATTACTAAAAATGAAGCTGTAAGAAAAGGTATTGAGAAGTTAGAAGAGAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCTTATGACGTATACTATCGTATATCAAGTATAGTATACGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAAAATTATGAAAAATGAATTAATGATGTTTGAAGAAAAGAAAGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTAAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 182871-183098 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUX01000005.1 Clostridioides difficile strain WCHCD15116362 NODE_5_length_199170_cov_75.2291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 182871 29 100.0 38 ............................. TAAAAGCTCTCTAATTGCTTTTTTAAACTTCTTTTCAG 182938 29 100.0 37 ............................. AGTTTGATTATCTTCTCATCATTTGGTATAACATATA 183004 29 100.0 37 ............................. ACGAGTTGTCATGATGATGGAGACACAAGTTTTACAG 183070 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 38 TTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTTATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGTTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATATAGAAGCTTTGCAGTGAGCGGTATTTGTGATAAAATATGGCTTAACACTTGAAATGTAAGGCATTGAGAACATGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGTATAGATGTAAGTATTGAAAATACTCAATTTATTTTGGG # Right flank : TTTTAAAACTAGCTCTTCTGTACTAACACATACATAAAGTGCTACTCTTAACAACATTTTACCTTCCCCCTTATTGTATATTTAAGAGCAGCTGAACGGCTCTTAAATATACTATGAATTGTTACAAAAAATTTGCATTCATAATACTAAATCTTGGCTCAAAAAATATCACATAATTATCTAGAGTGGCTGAAAAACCATATTTACTTTTATAACATTCTAAGGCTTCATTTAGAAACTTTTCAGTTACATCAAGGTATTCTGTCATTTCAGATATAGTCTTACAACCAGCATTAAAACTATCTATTATGCCTTTAAGACCAATTAACTTATTATAAGCCATTAATCTAGCTTTATATTCTTGTTTACTATTTTCAATTTTATTTAAGTCTAAAATATTGCCATATGAAGTATAATGATGCCCTAGTTCTTCTGCTAACACACAAGCTTTTTCACTCATATTATTAAGTGTATTTTTATTTAAAGCTATTCTATTATTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 195366-196581 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGUX01000005.1 Clostridioides difficile strain WCHCD15116362 NODE_5_length_199170_cov_75.2291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 195366 29 100.0 36 ............................. CTTGTAAAATCTCTTATACTAGAAAAATCTAATCCT 195431 29 100.0 37 ............................. GAGATTATCAATGTTGTTGCAACTCTTGCTGTTGCGT 195497 29 100.0 37 ............................. TTGCCTACCTTATGAGTTCTCTGTTTATTTTTAACTT 195563 29 100.0 37 ............................. AATTTGAACTTGATGACACAGTAATAATGTTTAAAAT 195629 29 100.0 37 ............................. GAGATTGTTAGCGTTGTTTCAACTCTTGCTGTTGCGT 195695 29 100.0 37 ............................. AAAATTATATCGTTAAAAACATTAATAAGCACAATAA 195761 29 100.0 40 ............................. TGCTCATTAAATCAGATTTATTAAATTCTCTGAATTTTTC 195830 29 100.0 37 ............................. CCTTTCATTAGTCATTTTTTGCATAAAAAAAAGAACT 195896 29 100.0 37 ............................. TCAGGATGAAACTTACTAGGCAAATCATAATACTCAA 195962 29 100.0 36 ............................. ACCCTTCGTACGTTCATGCGTACGACTGTACGTGTA 196027 29 100.0 37 ............................. CCCAAATGTATTTATAGCTGTAGCTTTTATTGCATTC 196093 29 100.0 35 ............................. GTTAGTGTATGACCTGCTGTTACTGCTACTCTCAT 196157 29 100.0 37 ............................. TCAAAAATATTTATATCGAAATCTTTGAATTGACATT 196223 29 100.0 37 ............................. CCAACTAACTCTTCATAATCCATACTCGTTAACTTTG 196289 29 100.0 37 ............................. ATAAGAGTGGTTTAAAAAAATAGTTCTTTAAATCAAT 196355 29 100.0 37 ............................. GCGAGGGAAGTTTTTCAAAAGAATTGTATAGTTGAAA 196421 29 86.2 37 ......T.........G...T.......G TTGTTGAAGTCGTCGAATTAGAAAGTAGTTCAAAAGT 196487 29 82.8 37 ......T........AG...T.......G ATAGATGCTCCCCAACATAAAATACCTTCAAAGACAG 196553 29 86.2 0 ......T........AG...T........ | ========== ====== ====== ====== ============================= ======================================== ================== 19 29 97.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATACTAGGATAAAACCTACTTCCTAATGAAAGGAGGTGGGAAGTATGGACAACTTTTTACTTAGTATATTAGCTAGCTTGATAGCTAGTTTAATTGGATATATCGTTTGTAGATGTATCAAAAACGTAAAAAGCCACTCTACTCGTGGCAAGAGTAAAAGTGGCTGGGAACTTGATTTTAAAATAAAGTTCCGCAAATTTAAATAATTTATATTTTTTAAAATTATGAACTTCACTCTACCGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATATAAATAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAACACTTGAAATATAAGGTGTTAAGGGTGTATGATAAGTGTTATCATTTGCATTACTCATGGTTCACTGCAAATTTGAGATAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : TACATTGTAGGTGGGTGGTGAAACACCACATACATTGTTTTATGTTCAAAACTAAATAGAAAAAAGGAAGCACTTACTTTTGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTGGTAAAAACCTATTGCTTTATTGTACGTACTATATTATAATTTAAGTACGGACGATAAAAAGAGAGGTGATAAGATGTCTAATAAATTAGGCAGACCACCAAAAGAAAATTCCAAAAAATTAAGATTTGAAGTTAGACTTAACCAAGAACAAGCTGATATATTGAATGAATGTGCTGAGAATCTTAAAATATCTAAAACAGATGTAGTAATTAGAGGGATTGAATTGGTGAAAGAGAAGCTTGACAAAAACAAATAAAAAACAGCCGCTGCACCGACCAAAGCACTTGCGACTGTTTCCCAAAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //