Array 1 21310-17007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAOT010000011.1 Arcanobacterium phocae strain IN-1A NODE_11_length_62237_cov_64.975322, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21309 29 100.0 32 ............................. TAATCCGCAACCGCGTACACGAAACCGATATC 21248 29 100.0 32 ............................. GTGCATAAAGGCCAGGGCTATTATGTGGGGCA 21187 29 100.0 32 ............................. AGTATACGTATCACGCCTAGAAAACGGAGCAT 21126 29 100.0 32 ............................. AAATAAGAATGGCGATTACGAACTCTCATACA 21065 29 100.0 32 ............................. TTCTCGCCGCGCAAGCTATCCGCGCTTTTCTA 21004 29 100.0 32 ............................. TGAATTTCGCGTTCGATACTGATGGCGATTTC 20943 29 100.0 32 ............................. TTTTTAAGGATTGTCGCGTCGCGCTTGGCTGG 20882 29 100.0 32 ............................. AGCTTGCCGCTCTTCTGGACTAATGTCCGGTG 20821 29 96.6 33 ............................A CCAAAAGCTACTCGGAAGGCGCGTTCTTCGGGG 20759 29 100.0 32 ............................. GAGATACCGTTCACGAAACCACGGATAACGTT 20698 29 100.0 32 ............................. TTTTGGGTATAAAAATATCCCCTGCGCTTTTC 20637 29 100.0 32 ............................. TATGCACCAGCAAATGTTAGCGGCCGTACCGC 20576 29 100.0 32 ............................. GGCTTGCCAATAACACGCGATATCTGGGATTT 20515 29 100.0 32 ............................. TGGTGTGCCTGTCGAGTTACTTGCTGGACCTC 20454 29 100.0 32 ............................. ATCAGCGAATATTCCCGCCCGTCCAGTGACGA 20393 29 100.0 32 ............................. TTGCGAGTCTTGATTGTAGCGCCGATAATCGT 20332 29 100.0 32 ............................. ATTTCGCGTATATCGAGATTGAAGAATCCGCA 20271 29 96.6 32 ............................G ACACAAACTGCGCTCATACAACGTGAGCGCAG 20210 29 100.0 32 ............................. TATATCCGAAGGGCTGGATTGTCAAGAACGCT 20149 29 100.0 32 ............................. GAGCCACCCCAAGACAACCGTTAAAGAATCCA 20088 29 100.0 32 ............................. TGCTTTGGTGCGCGCTGCTGAGCTGATGGCGC 20027 29 100.0 32 ............................. TTAGAAGAACGCACACTAACCGCGCGTGCCGT 19966 29 100.0 32 ............................. GTCTCGGTGACGCACACACCCAAGACACTAGC 19905 29 100.0 32 ............................. GAAAATAACCGAAGTATCGGTATCGGTTTCGA 19844 29 100.0 32 ............................. GTCGCTGATCTGTGCAGTGCGCACAACGTCGC 19783 29 100.0 32 ............................. GAGGACGAAAACGCGGACACTACAGCAAGGTC 19722 29 100.0 32 ............................. TAGACTTTGTACCGGTACGCCTTCATGTGGAA 19661 29 100.0 32 ............................. AACTATACGAGCTGCCGACGCAGGCGCACCCC 19600 29 100.0 32 ............................. GAATGGGAATAGTCCCGATGTGACCTTATGCG 19539 29 100.0 32 ............................. GGAACGCTACTCATATTAGGAGGGCAAGAAGC 19478 29 100.0 32 ............................. TCGAATACCCCGCAGACTGGAACGCTTCACTG 19417 29 100.0 32 ............................. TCCGTTCGACGGGCTAGTTAGAGGGTTCCTCA 19356 29 100.0 32 ............................. ATTTTCCTGCCCTTGAGCACATTTCTGGAAGT 19295 29 100.0 32 ............................. GCGGACTGTGGGTAAAAGGCAAGTTAGATCTG 19234 29 100.0 32 ............................. ACGATATTTTGCAGCAACTCAGAATCCACATA 19173 29 100.0 32 ............................. AACCACAGACCGAGGAAGAACGCGCCGACCGG 19112 29 100.0 32 ............................. TAGAACACTTGACCGCCGCCCAGAAGATGTTG 19051 29 100.0 32 ............................. GGCTTATTCGAGCGCTTCGAGCCTAACGCTCT 18990 29 100.0 32 ............................. TTTCGCTTGGCCAGAAAATTGTGCGAGATTGA 18929 29 100.0 32 ............................. TGCATTGTTCTTATGCGCACTTGCCGCATTCA 18868 29 100.0 32 ............................. ATGAGGTGCTCGCTTTCGGCCGGTGCTAGTTC 18807 29 100.0 32 ............................. GAATCGGCGAAGCCATACGCGAAGAAAACAAC 18746 29 100.0 32 ............................. AATCAAAGGACTATTCAGCGCAGGATTCGCGA 18685 29 100.0 32 ............................. ACCTAGCCAGTCTGCTAAATAAACAGCGTAGA 18624 29 100.0 32 ............................. TTCTATTGTACCCGTTACAAACGTGCGTAACT 18563 29 100.0 32 ............................. AGCAGAAAGCAGAAAAGGTCGAATCTTCAGAA 18502 29 100.0 33 ............................. GTCTTCGGTGTATTTCCCGGTTGCGTAGTCGTA 18440 29 100.0 32 ............................. ATTAACTTTTTTATGAGTAGAGTATTCATTAT 18379 29 100.0 32 ............................. TGTAACCATCCGGATCAATCTCGCACAATTTT 18318 29 100.0 32 ............................. TCGTCAGGGAATTATGGAGAAGCTACGCAAGG 18257 29 100.0 32 ............................. GGTACCGCATATAATATTTATATCGGCAAGGG 18196 29 100.0 32 ............................. AACTGATCCAGCAGAATGGCTAGGATTCGGAA 18135 29 100.0 32 ............................. CACCTCATGGCTCGCGTCAATAGCTCGTGCAA 18074 29 100.0 33 ............................. AGGAGGAATTCACAGTATGTTTTCCACGTATGG 18012 29 96.6 33 ............................T GGGACGATCACCAACCCCGGCCTACTGGACGCC 17950 29 100.0 32 ............................. GCCGAACACCTAGCATTCCTCACCGAAACCTA 17889 29 96.6 32 ............................G ACGACGAACAAATCGCTGCTGCCACTGAGCAG 17828 29 100.0 32 ............................. GACCTTGGCGACTTCGCATACTACTTTCACTA 17767 29 93.1 32 ..........................AG. CAGCACGTGTGGGACCAGAACACTGCATGGTA 17706 29 100.0 32 ............................. AAGCATCGAGAATACGCCCACACGCACATGCT 17645 29 100.0 32 ............................. GGATTCCTACTAACACGGCTGTGCGTTTTGCT 17584 29 100.0 32 ............................. CAGCCTATGCGCCCAGCGATTTTACTAGACAC 17523 29 96.6 32 ............................G CTCGATACCATCACCAACCGTGGCAAGAATCG 17462 29 100.0 32 ............................. AAGGTCTAATCCTTCCGCCTGGTCAAGAGGGT 17401 29 89.7 32 ..........................CTT TCTCGCATTGCTGCAAGATTTGCTGTACTTGT 17340 29 100.0 32 ............................. AGGAGGTGCGCTAAAAATCGAGCTAGTAGATG 17279 29 100.0 32 ............................. ACATCATGGTATGCCCTCCAAACCGTTGAAGA 17218 29 100.0 32 ............................. TTGCTGTGTAGGACGAAATCGTTGAAATGGTT 17157 29 100.0 32 ............................. GGTGGAATTAGCTGTGCGTCTTGCACTTTCGC 17096 29 96.6 32 ............................G TGCTCGCGGACATGACGTGACGCGCACCGTCG 17035 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 71 29 99.4 32 CTCTTCCCCGCACACGCGGGGGTATTTCC # Left flank : TAGACGCGATTTACGGAGGCAAATTCATAGCAAGCATATATTGGAAGACATGCTTGGCACGCTCATGGAGATCTTAGAACCACACCTGCCGAATCGTGATGATGATCGATTGATCAATGATAATGGTGAAGTTTCTGGGCACGTACAATACGGAAAAGATGATGAGTGATGTTTGCAGTCTTAACAATATCTGCAGTTCCCGAGCATCTTCATGGCTATGTAACCCGATTTCTCACTGAGGTTGAAAGTGGGGTTTACGTCGGAAATATTTCTCGGAACGTGCGTGAACGCCTATGGGAACGTGTGAGTAGTACGCTTGACGAAGGAACTTCTACTATGATTTATAGCGACCCGCGACAAGAACAAGGATTCTCGATGCTCACTGCAGGAAAAAATTCACGAAAAGTATTGGACTTAGACGGTCTAACCGTTGTGTCCATGCGTCCTGGACGTGGAGAATCCAAAATTCGAGATCGTTGAAAATAAAGGGTTTCGTTAGT # Right flank : AAAATTTGAAGGCGATTCAAAGATGGGCGCTCAAGTGATCGGAACGATCATGATCAAGGTAGCGCTTCTTATTGTCGCTATTCAAAATGTAGATCTAATTCTTAAAGCTATTAACGAAGCTGGCGAAACACTTATTAACGGGCTGAAAAAGTATGCAACAGTCATACAGGCTAACCCTGTCAATATCGGTGATCTTGATATGGATACTCTAGATATGATCGGCGCAATGATCATTCTATTCTTGCCCTGGCTGATTTCAATGCTTGGCGGCATCGTCGTAAAAATCGTTGTACTCTTGCGATTTGCTGAGATATACATACTTTCTGCTGGGGCAACTCTACCGTTAGCATTCTTGGGTCATACCGACACAAAATAAATTTCGATCGGATACCTCAAGAAGTATGCAACGGCCATGCTTCACGGTTTCACGATCATCCTTGTCCTGATCATCTTTGCCAAATTCCAAGGAGCCGGTACAGACCTAGGAGAAAACCCAACAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCACACGCGGGGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 71517-71367 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAOT010000008.1 Arcanobacterium phocae strain IN-1A NODE_8_length_121229_cov_66.268530, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 71516 28 100.0 33 ............................ CACTCTTTCGCTACACGTGCATACCGTAAGACT 71455 28 100.0 33 ............................ GGCGTGCGCCGCCTGACCACATAGCGAACACCG 71394 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GCCCAGCCTCCCCGCGTATGGACGGAAC # Left flank : AGAGTCGTTTCCCTCACGCACGAGAACTCAAAACAAGCGCAGATATTGAGGCCTGGAACCGGGGAGAGTTCACTCTCGGCCTGATCCACCCAGCCTCAGCTGGCCACGGACTGAACCTCCAGGCAGGCGGGCACCTGCTTGTGTGGTTCTCGTTGACGTGGAGTTTGGAACTCTACCAGCAAACCAACGCGCGGATCTATCGGCAAGGCCAGAGTGAGCCAGTCACGATCACGCACCTAGTAGCAGAAGGGACGCTCGATGAAGCCGTCCTTAAAGCACTCGAAACGAAAGATGTTACTCAGGCCGTGCTAATCGATGCGGTCACACACGAAACCCACACAACCACGACCTCTTCTCGAAAGGAACTCTCATGCATGTGATGACCAAATACCTTGACACAAAGAAAGCCGCCATCGCCGCCCTTCAGGACTATACGTTGATGGAACAGATCATCGACACCACCGACGATTCGATAAAAGAGGCGTATGCTGATGCGTCCA # Right flank : ACCACCCTCGGGTGACCTCCACGCGAGCGAGAACCGGATCGTGGCGAGCATTGAGCGGATCAGTGCGTACAAGGCTCGCTACCTGCAGGCACGCCAGTACATGGACTGGTTCTTGCCCGCGTGGGAAGTCATCGCTGAAGACGACCGCTTCATCCTCGAAGGGTTCTTCCTCAGCGAGGGGACACAAGATGAGAAAGTGTCAATGATTGCCGATCACTTCTACGTCGAACGTGACACCGTCTACCGGCGCAAGAACCGTGCCCTCGACAGGTTCGCCACCGCCTTGTACGGCCAGCTCTAACGTTAGCGGGTATCCGAAACCTGCGATAGAAATCAGCCTCAAGGCGTGAGAACATATAAGTGGTTGAAAAGTAGGAGAAGCCCCAAGAACCCTGAGCTGGGAATCTTGGGGCTTCACCATATCCGCAGGAAGGAGCAAGCAGAATACCAGTCAAACCAGCTTAGCGGATAAAACGTGTTGCTAGAAAATGGGTTTTATG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGCCTCCCCGCGTATGGACGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //