Array 1 1136640-1138071 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGDH01000001.1 Escherichia coli strain NCTC9091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1136640 29 100.0 32 ............................. TCCCGCGCCGAGGACTACGGCGATCGGGTTGT 1136701 29 100.0 32 ............................. TCATCAGATGGTGATGAGGAAAAATTAATAGA 1136762 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 1136823 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 1136884 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 1136945 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 1137006 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 1137067 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1137128 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1137189 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1137250 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1137311 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1137372 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1137433 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1137494 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1137555 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1137616 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1137677 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1137738 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1137799 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1137860 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1137921 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1137982 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1138043 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1153573-1155554 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGDH01000001.1 Escherichia coli strain NCTC9091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1153573 29 100.0 32 ............................. CGATCCGGGCGTGCCGTTTGTTGCTCGCGGTA 1153634 29 100.0 32 ............................. ATTATATATATCAAAATATTGGTCCTGTATTT 1153695 29 100.0 32 ............................. CAGATCGTTAAGGCAAAAACGCCCCAACGAAT 1153756 29 100.0 32 ............................. GCGCGCGACTACTGCCCGACCCGCCGACAACA 1153817 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 1153878 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 1153939 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 1154000 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 1154062 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 1154123 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 1154184 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 1154245 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 1154306 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 1154367 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 1154428 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 1154489 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 1154550 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 1154611 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 1154672 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 1154733 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 1154794 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 1154855 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 1154916 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 1154977 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 1155038 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 1155099 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 1155160 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 1155221 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 1155282 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 1155343 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 1155404 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 1155465 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 1155526 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //