Array 1 249048-248288 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJNB01000003.1 Tepidimonas alkaliphilus strain YIM 72238 Tepi_alka_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 249047 28 100.0 33 ............................ CCGCGAGCGCCCGCCGGCCTTCGATGGCGTGAC 248986 28 100.0 33 ............................ CTACCAGGAGCCCGGCGCCGGGCGCTTGAAAGA 248925 28 100.0 33 ............................ GGAGTCGGCCTTTCTGGGTGGTTTCGTATTGTG 248864 28 100.0 33 ............................ CAGCTCGACGGAGGGCATCCATCCGGTCTGCGC 248803 28 100.0 33 ............................ CCTGCAAAGCGGCACGGGGCCGGCCTGGTATCT 248742 28 100.0 33 ............................ CTCATCATCCGCAAACACCCCATCCTCAACCGG 248681 28 100.0 33 ............................ CTTGGTGCGGATGAAGAGGTGCGGCGTGGGGCT 248620 28 100.0 33 ............................ CGCGGGCGTGACCTTCCCACGCCCAGCGCTTGA 248559 28 100.0 33 ............................ CGACTTGATCCGGTACTCGCCGCGCACACCGTC 248498 28 100.0 33 ............................ GTTCCTCAAGCGTCTGGCGGCGGACGCTGCCGC 248437 28 100.0 33 ............................ GTTGACCATAGTCATTGCGCCCCCATGCCCACA 248376 28 100.0 33 ............................ TTCGGATCGCGTCGTCGGCATGGCATGTATCCG 248315 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 33 GTCTCCCCCGCGCATGCGGGGATCGACC # Left flank : GCGCGCTGTGTTGGACAAACAAGCCGACAACATCGAACGGGAGGTGCGCAAGCGTGCGGCGGCGGCCTTTCGACGAGACAAGGTCATTCCAAAGATGATCGATCGCATCAAGGAACTTTTTGATGTCGATGACCGTGGTGGCAACTCGTAACGTCTCAGCCCGGGTGCGCGGGTTTCTTGCCTCCGTTATGCTCGAACTTGCGCCCGGCATCTACTGCGCGCCGCGTATCTCGCCAGCGGTCAGGCAACGGATCTGGCAAGTGTTGGAAGATTGGTTTCCCAATGAGAAGGATGCCTCGATTGTGATGCTCTGGAGCGAGCGGGAGATGCCCGCCGGCCAAGCCGTCAAGGTTCTGGGCGTGCCCCGCATCGAGCTCGTTGAGGTGGACGGCATCGTTTTGGCACGTCGCCCGTCCACCCCTACGAACCCAAGGCAACGGCCAAGCGATTGATCTTTAAAATTGTAGCTTTGCCTTTCAAATCAAAGACTTTCTTGCAAG # Right flank : TTTGGCAGCGACGCCGCCGCCGTGATCCCGCAAGAGATGGCGCTGGAGCTGATCGAATCCGGCACGAAGAGCGCCTCCGCCGACCTCTGCCACAAGCTGATCGACTACCTGGATCGGCAGGTCTCCAAGGCGGTGCTGGGCCAGACCCAGGCCGATCCGGCCCGATCCGGCCCAACCGGCGGCGATCCGGCTGCCGCACAGGCGCGCGCCGTGCACGGATGGCATGCGACAAGGCCGCAGGCCGCAGGGCAGCCGCACACAAGCCACGCGCCGCAGCAGCCGCCCGAGCCCGACGAGCTCGACCGCCTGGTGGACGAAGCCATGGCCGGCTGGCAGCCGATGGTGGAGCCGCTTGCGGATGCGGTGCAGGCACTGCTGGATGCCGCCGCCGGGCAGGGCCTGACGGCGGAGGACGTCAGCCGCCGGCTGGCGCAGGCGCTGCCTGGGCTGCCGGTGGAGGCGCTGGCGGAAAGGCTGGCGCGCGCGCAGTTTGCCGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCCCGCGCATGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 3973-3224 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJNB01000018.1 Tepidimonas alkaliphilus strain YIM 72238 Tepi_alka_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3972 28 100.0 32 ............................ TCAAGATCACCGCGATGGTGCACTACTACAAG 3912 28 100.0 32 ............................ AAGACCGTGGCGCTGATCGCCAATCTGGCCGA 3852 28 100.0 32 ............................ TGGAAGCCCACCGAGGCCTCCGACCTCAAGAT 3792 28 100.0 32 ............................ GGCATCATGAGCAAGTGAGGGGTGCGCTATGC 3732 28 100.0 32 ............................ GGGGTGCAGCGAGTGTGCGGGGAGGGGTGCAG 3672 28 100.0 32 ............................ CGATGCAAGAGCCTGAACCGCTGGCGACTCTC 3612 28 100.0 32 ............................ GTCAACTAGGGGTAAACCCGCAGCGAGTGAAC 3552 28 100.0 32 ............................ GGCAATTCGAGTTGCTCGTCACCGGATTCGTC 3492 28 100.0 33 ............................ CAGAACGTTGCAACATCTTCCAGCCCCGGCAAT 3431 28 100.0 32 ............................ AGACAGCGAACTTGCTTTTGCCCGTGCCGAGC 3371 28 100.0 32 ............................ TTCCTGACCATGACGCCGGTTGGGCTGATCAT 3311 28 100.0 32 ............................ CTTTGTCGCCGGGCTGATCGCCAAGATCGACA 3251 28 89.3 0 .........................GGA | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 32 ATTATCCGCCGTATAGGCGGCTTAGAAG # Left flank : GTCTATGCCAGGAGGCTTTATGCGATATTGGCGCGCAAATACAAAATTGACTTTTCGCGCGAGCCCGGCAAAGGCAAAAAGGAGACGGCATCCGACTTGGTCAACAGCTTTCTAGATCACGGCAATTATCTTGCATATGGTTACGCGGCTTGCGCTCTTCACACGCTCGGTATATCATTTGCTTTCCCGGTCTTGCATGGGAAAACACGACGTGGAGCTCTTGTTTTCGACGTAGCGGATCTGGTCAAGGATTGGCTTGTGATGCCGCTAGCGTTCGAGTTCGGCGTCAAGAAGTCCGAAGACCGCGAGCTGCGCGCGGCCATCATCCGTCGCGCGCACGACGACGAGGTTCTCGACCTTCTTATGACCTTCGTCAAGTCTATCTGCGAAAAATACTCGAAAAATCAAGGGCTTGCGCAAGAGTCTCCGCCGCAAGGTTCAGCGTGAGCAGGCATGTGCAAGTGCTTGTCGTTCTTTAAAAACGTGACGTTGTAAGAACG # Right flank : ACGTCTGCCCAACCCACCCCTGACCGGGTAGCATGACGCCTGTAAGGAAACATGCTGCAGGAGCGCCGCCGATGAAGCAAGCCAGCTTGGGAGCCGGGTTTGAGCTGAAGGTCAAGACCACCCGCAAGCGCGAGTTCCTGCGGCAGATGGATCAGGTGGTGCCGTGGAAGGAGCTGGAAGCGCTCATTGCCCCGCACATGCCCTTGCCTGGCCCCAAGGGCGGCCGTCCCCCGTACCCGGTGTCGGTGCTGCTGCGGATTCACTTCCTGCAACAGTGGTTTGCGCTGTCGGACCCGGCAGCTGAAGAGGCGCTCGATGACGTGCCGGCCTTTGCTTAAGTTCTCGGGCTGGACCTGGGGGTGGACACCGTGCCGGATGAGACCACGATCCTGCGCTTTGATGAAACCTTCGGTTTTCGACATCTGCTGCAGGAGAAGAACCTGAGCCAGCGCATGTTTGAGCTCGTCAACGAGATCCTCACCCAGCGCGGGCTGATGGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATCCGCCGTATAGGCGGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTATCCGCCGTGTAGGCGGCTTAGAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 373779-374221 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJNB01000001.1 Tepidimonas alkaliphilus strain YIM 72238 Tepi_alka_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 373779 36 100.0 33 .................................... GATTCTGGTACTCCAGGTTGGCGCGGTCGTAAG 373848 36 100.0 31 .................................... GCCTCGAGTGGCCCAAAAGGCCTTTTCCAGG 373915 36 100.0 33 .................................... TTCTCAGCAGCGCCGATGGTGCCGCTCATGATG 373984 36 97.2 32 ........A........................... GACGCCCGTGTTCATGCCGAACAGGGCGTCCC 374052 36 97.2 32 ........A........................... CACGCCTGTCGCCCTTGCGGGCGAGGTCGCGG 374120 36 97.2 31 ..............................C..... CCGTTGTCATCCAGCATCGGCTTGCCCTTCT 374187 35 75.0 0 ..T...ACT.......-..G.......A..G....T | ========== ====== ====== ====== ==================================== ================================= ================== 7 36 95.2 32 GTGGAGGTGCCCCGACTTTCAAAAGGGGATTAAGAC # Left flank : ACCACAATCAAGCGAAGCGGGCGGCGTGATGGCATGGCAGGTTGGTCAACGCAAAGGTCCAAGGCAGCCGGACGTCGCACGCCGCCACGGACGCGCGCGCCGGTCGCACCCGATTGTCATCCCAAAGACGCCCGCCACGTGCAACCAAGCGTAACGAGGCGGGCAGCATCCCGTTGAACAAGAGGCCAAGCATGTCACGCTTGCCTTCTGCGCCCCGCGATGGGTGACGGATCGGTGTTCGCGGACGAGTCATCCCTTCGGCCATCGGAAAAGCGCCCGGGGCTTGTCGCCGTGGAAAAGAGTTCTTTTCAAACAGATGTTTATGATTTTTTATTAATGTAACTTCTTAAAAAAGTTGTCCGCGAGCTCTGTGGACTGAGAACTTTGGCTTATACTTCGCTTCGCAAGCCGTTCGGACGTAGCCAGGTGGCCTCGGCTCAGTTGCTCGTCCGCAACAGGCTGGATAAGTGGTTGACCCACAAGCCCATTTTTGGGGTAGA # Right flank : TCAGGCTCGCGCGCTGAACGGGCAGGGGGGCATCAGGGCGCCTTTACACTCTCGATGCCGGCGCTGTTGTTGCACTTCCGGGATGGCGCGTCGGCGCCTGTGGCGGCAAACCGCAGCGGCGTTGCAGCGCTGGGGCTGGAAGGCTGGCCTAAGCTAGCCCAGCGATGCGCCGGCTGCGGTGGGCCCCGCGTGTGAGGGAGTCCAACGAATGATGAGATCCCAAATACTCCGCGCGCTGTCGGCAGCCCGTCGGTTGATGGCCGCGGTCGGGTTGGCGGCGTTGTCGTGCACCGCCGCGGCCACGACCCCAAACCCGGTGGTTGAGCCGGCGGCCCGTGTGGTGCACCTGCAGGCGCAGGCGGAACGCCGCCTGCCGCACGACTGGGCGGTCGTCACGCTGGTGGCGCACCAGCAAGGCAGCGAAGCGGCCGCGGTGCAAGCCCAGTTGCGCCAGACGGTGCAACTGGCGCTGACGTCGTTGCGGGCGCACCAGCAGCCAG # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAGGTGCCCCGACTTTCAAAAGGGGATTAAGAC # Alternate repeat : GTGGAGGTACCCCGACTTTCAAAAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //