Array 1 143261-141727 **** Predicted by CRISPRDetect 2.4 *** >NZ_DADWZK010000009.1 Salmonella enterica subsp. indica strain CCUG30038 SAMEA7113396-rid11186963.denovo.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 143260 29 100.0 32 ............................. CCACAGGCAGCACAACGATTTTTCAAACCGCG 143199 29 100.0 32 ............................. TCAATCCTTCCCAATTGGTGACTTATGTCTAT 143138 29 100.0 32 ............................. GGGGAAAGACTTTCATCCCATATGAAGCAGAC 143077 29 100.0 32 ............................. GTGATATATTCTCAGGCACGCGTAGAGTCTTA 143016 29 100.0 32 ............................. GTACTGATTTCCGGTGACGGTATATAAAACGG 142955 29 100.0 32 ............................. ACCCGCATGATGTCGCACGTTTTTGCAGAATT 142894 29 96.6 32 ............T................ ACGCCAGCAGCGCTGGCAGAAATTCAGGAACT 142833 29 100.0 32 ............................. CCCCCAGCGAATAAACGCGGCCTCGATTGCCA 142772 29 100.0 32 ............................. AACATGAGAACCGTTATCATATTCTTTAGAGA 142711 29 100.0 32 ............................. CCAGCACATTGACCAAAACGCCCAGGATCGCC 142650 29 100.0 32 ............................. CAATCAAATGGGGTGAGCCTGGTGGTCGATGT 142589 29 100.0 32 ............................. ATAGTGGTCGTTCGTGTTAATCAGGGGAGCGA 142528 29 100.0 32 ............................. AAAACCCCAGCCACCGACGCTTTCCTGGCTGA 142467 29 100.0 32 ............................. ATGTGTACAAACCGGACAGGAGCACTGATGCT 142406 29 100.0 32 ............................. CAGACAATAGCGGGGGCGGCGCTTCGTCCGCA 142345 29 100.0 32 ............................. CGCAAACAGTGCGTAATTCGCAAAATTCACGC 142284 29 96.6 32 ............................T GGCGCGCTTACGCGCTCAGCAGAAGTGGGGGC 142223 29 100.0 32 ............................. AATGCTTATAATTCTGCCGGTCTCTCAAGTTA 142162 29 100.0 32 ............................. TCTGCTGACAGCGCCTTATTGTTCACCTTGCG 142101 29 100.0 32 ............................. TTCCGGGGCCGTCGTGTGAAGGGGTTAACGCG 142040 29 96.6 32 ............................T GCAGCCAGGGCGCGGATCTCGTGGAACGTGGG 141979 29 100.0 32 ............................. CAGGCCGGTAGCGTAGAAGTTAGCGGCATCAG 141918 29 100.0 32 ............................. TTGTGTGCTTGAGTGCGACGATCAGCACAGTA 141857 29 96.6 73 ...........................A. CCAAATTGGTACTGTCGGCGGTATCCAGCGGGGATAAACCGCGTCTTGACGATCCATTCTGGCAGTCATTCTA 141755 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ========================================================================= ================== 25 29 99.2 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACAGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTTCACCAGCAGATCAGGACGCTTTTCCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGTCTTAAGTCGTGCCAGCTATTGCCGTTCGGGAAAGATGCATTTTTCACGCGTTGCTGGTATCCATCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGATAGGACGGATTGCGGCCCGGATTGGTGTTGGCGGCGATACCATAATGGCGCGCAATCGCCAATGCCCGATCGCGGGTCAGTGTACGTACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTATCGCCAACAATAAGGTTATCGAGATTAATGACCAACAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 159641-159429 **** Predicted by CRISPRDetect 2.4 *** >NZ_DADWZK010000009.1 Salmonella enterica subsp. indica strain CCUG30038 SAMEA7113396-rid11186963.denovo.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159640 29 96.6 32 ........T.................... CCGGTGGTTGTTACGCTCTCTGCGCATTTGAA 159579 29 100.0 32 ............................. TATTCAGATATAACCAGCACAAGAAGTTTTAA 159518 29 100.0 32 ............................. ATCACGCGCCCGAAACCTACACCGGCTTATTC 159457 29 89.7 0 .........................C.GT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATGAAATCAAGCATCCTGTTGGGCGAGTGCGTGATATTGAGGCACTGGATGAATTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTAATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGTATTAATCTTATAGACGGCCTGTCGTTGCCGTCTGTGGCTCATCTATTCCCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCACGGATAAATTTTTCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAAATTTTTTGTAGCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAATTCATAAACAATGATATACATGTAGT # Right flank : TGCATAATCATAATCTGTGTGCCAGTAATGGCTGGTACAGACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTATACAGGAGAAGGCTATGGCGTTAAGGATCTGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCAGACCTGGATTAAGCCTGTTGGTCCAGGATGAGTTTACGTCGATCTTGTTCGATACCGGGCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATGACAGTCGAATTATCTGCCATCCAGATATTGCGCGTGAACGCTATGCGGCAATCAATTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGCGA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //