Array 1 105420-104605 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLZ01000007.1 Prevotella intermedia strain WW855 NODE_7_length_105480_cov_11.3158_ID_40187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 105419 47 100.0 30 ............................................... TGGCATTATTTATCCGCGCGTGTGGTTAGC 105342 47 100.0 29 ............................................... CCTTCAGCATTGGTGGAGAGTAATGCTAT 105266 47 100.0 30 ............................................... CCGATCGAAATTACAGGAACTACAAGGGCA 105189 47 100.0 29 ............................................... GTGAATGCAGGCGCAACCAGTGGGCAGTA 105113 47 100.0 30 ............................................... GCAATCTCCGCACATCAACCTGTTGTGTCC 105036 47 100.0 30 ............................................... TCTTATTCCAACGACTATCCATAGAGAACA 104959 47 100.0 30 ............................................... TTTATCCTGAGTCAGGAACTTTGCCGTCGA 104882 47 100.0 30 ............................................... ATTGGGAAAATAGTATCGAACACTTCTGCC 104805 47 100.0 30 ............................................... AGGAGTACATTTGACAATCCTACTTTATTG 104728 47 100.0 30 ............................................... CGTCAATAGTTACGTCAGTAACAAAAGTGG 104651 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Left flank : AAATTAGTATCTTTGCATTGGTAAATACAACACCGCTATCGTCAAACTTCTTTTCAAACG # Right flank : TCAAATGGCTTAAAATGATGAACATCAGTGTTGTTACGAAAGCTTAGAGAGAAAGAAAAATGCAAACAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGGTTAAAAGAGTTCTAATTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAAAAGCTTTATTTCTTCAAACTGTTTATCTGTAATGCCCATTATTCCAACTTTTCCGTATGCTGGAATAAAGGTGGAAACTCTTTTAATGTGTACTTCCATATTTTCTTTACTACCACAGTGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTGTATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCTGGATAAACCATTCTTCTTTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3135-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLZ01000072.1 Prevotella intermedia strain WW855 NODE_72_length_3770_cov_6.15729_ID_40317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3134 46 97.9 30 .........-..................................... CCAATGCTTTTACGTCCTCGCCTGCGTCGT 3058 47 100.0 30 ............................................... AAAAGCCACAATGCCAAATTTTTGCAACAT 2981 47 100.0 30 ............................................... AATACCACGCACGGCGGGAATAACGAATGT 2904 47 100.0 30 ............................................... AATATTCGGTTTGGAAAACAAAGTTGAGGA 2827 47 100.0 30 ............................................... CAGATTACGACGCAGAACCAGTTACCCACA 2750 47 100.0 29 ............................................... CACTAAGTGTACCAGTTGTGTATAAGTAG 2674 47 100.0 30 ............................................... TAAACCGTTATTGTCGTAAATAGTAGACAG 2597 47 100.0 29 ............................................... ACGCTGAAAATAACCGTCTTGCCTCATCT 2521 47 100.0 30 ............................................... GAACACGGAACAAAACATACGTGCAGAGTA 2444 47 100.0 30 ............................................... AAAGCTATAAATAAAAAATTGACAATTAGT 2367 47 100.0 30 ............................................... AATACCGCCTAACAAATCAATATCGGAAGT 2290 47 100.0 29 ............................................... AATTTTATAAGAAAGGCGCTAGATTAATT 2214 47 100.0 30 ............................................... TTTGCAAGAGGTAACTGGCAAACACTCTTT 2137 47 100.0 30 ............................................... ATTAAAATGCATCATACGAAAAATGTTTAA 2060 47 100.0 30 ............................................... GTTTCTTCTTCGAAAGTGTCGAAACTCTGT 1983 47 100.0 30 ............................................... GTTTCTTCTTCGAAAGTGTCGAAACTCTGT 1906 47 100.0 30 ............................................... GCACTGTACAGTAAAATTATCGTCCTGCTG 1829 47 100.0 30 ............................................... CAGCAAACCCAGTGCACACAAAGAACGCAT 1752 47 100.0 29 ............................................... AGTAAATAAAAAGGAGCAAAAAGTTATGG 1676 47 100.0 30 ............................................... GAATACCCCGAAATGTAAAACAACGTGGGG 1599 47 100.0 30 ............................................... AAAGCGTTATATACTTATCGTCCGAATACA 1522 47 100.0 30 ............................................... TTTCAACAGCCAACTCACCATTTTTAGTAA 1445 47 100.0 30 ............................................... TTACCTGCGTTGCTAAGGCGAATAAAAAGC 1368 47 100.0 30 ............................................... GTTAAGCCGATTTTTGGACATATATCAGGA 1291 47 100.0 30 ............................................... AAACAGATTTTTCGGAATGGAGAGGACACA 1214 47 100.0 30 ............................................... GCAAAGGCTTACAAAGATGTTGCCTTTGCC 1137 47 100.0 29 ............................................... GCTACGATGAGGCAGAACGCTACAAGTTG 1061 47 100.0 30 ............................................... TTGCAGTCAGATACTTACTCACGCTTTTTA 984 47 100.0 30 ............................................... TTGTTATCGGTACACCGTCCTTAAACTGAA 907 47 100.0 30 ............................................... TAACCATTCAAACGAACAAATCTACGAAGT 830 47 100.0 30 ............................................... AGAAGTTACTTCAAATTCAAAGAAGAGCAA 753 47 100.0 30 ............................................... CGCCTTTCTGAATGAAGCGCACCACCTTTT 676 47 100.0 29 ............................................... ACGCTATGGAGAAAGAGAAAGAGTATAGG 600 47 100.0 30 ............................................... AACACCGCCTAACAAATCAATATCAGAGGT 523 47 100.0 30 ............................................... ATTGATTGGAAACAGAATCAAAGAGTATGT 446 47 100.0 29 ............................................... ATGTTGGCAATACTCGGAGGTAATCAAAC 370 47 100.0 30 ............................................... TAATTGTTCTAACTTGACACCTGCTTCGAG 293 47 100.0 30 ............................................... GTTTTTGTTCATAAAACGGGTTATGCGTCC 216 47 100.0 30 ............................................... CGAAGCATTAGAAACAAAAAGCATTAAATG 139 47 100.0 29 ............................................... GTTCAAAAACTGCAAATTCTGCTCAAATA 63 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 41 47 99.9 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Left flank : GTGTTTTATTTTCAGTGGTTGCATACCTTTATTCGTTAAAGTTTGAATATTTGTTAAAACGGCTCCGAGGTTGTTAAAATCCAGAGCCTCAACTTCGGAATTACGGGCACTTTTCTGCACTTTAAATTATTTATTTGCAAATAACGCCATTATTTACGTGCTACCATAAGTGCTTTGTTCATAGCTTCTTGCAAGCTTATAGGGTAGTGTTGTGCAACGAAACCACACCTTTTTTGTTGTAAAACGAACACTTTTATTCGTATATAGACTATATTTTGCGCTCCGTCATCATCTTTTCGCTCTGCAAAAGAGCCACTATTGCAATCCAAAAGTGCCGCTTTTGCACGGTAAAACCTATTGTTTTGCATTGCAAAAACGGCTCTTTTACTTTTCCACCTCTATTTTTCCTCTCTCTTTTTCTCTATTTTCCCCTTTCCGCTTGTGTTAAATTTATTGCCCCATTTACTTGATTTTAGAACAATAAATCGGAAGTGTCGTTA # Right flank : CACCGCTATCGTCAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTGGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.34%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 1205-643 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLZ01000059.1 Prevotella intermedia strain WW855 NODE_59_length_7967_cov_7.91071_ID_40291, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1204 36 100.0 30 .................................... TAGTTCTTTCAAGTTATTCCAAGAAAGAGA 1138 36 100.0 30 .................................... TCACAGACCCAATGTTTTTACCTGGTCTCA 1072 36 100.0 30 .................................... AACTTTGGTGGATAGTTGGTAGTATGGTCG 1006 36 100.0 29 .................................... TAGGAACCCAGTGTCCTGTCGCAGTGAAA 941 36 97.2 30 .....................T.............. CACCACGCTCTCACGCCCAGCGTTGAAAGC 875 36 100.0 30 .................................... TTCATAAGTGATGATAATTCTTCACTCTTT 809 36 100.0 29 .................................... TTCTTTATATTTATAGTTTTTCTAATGTA 744 36 100.0 30 .................................... TATTTGGTCTTTCCTTGCTTCGCCCATTGC 678 36 94.4 0 ..........................C.T....... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.1 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TCTGAGAAAATTAACCGTATGCACCATGAAGCTATACTAAAGGCACACCAAAGCATTTATAAATTGCTTAGGTTTACCACAGGCACAGAAAACGACGACTGCATACTGGTGTGGGAACAGCCTAAGGGTGGCGGAGAGAAAACTTATTATTTCAGACAGGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAGGTATACAACAAGAGCTATAGTATCTTTCTATCAAAAAGTGTAATGTCGCTGATATTTGAATATAGAAGTCTTGTATATGGGCTGCTGCTTACTGCGAAGGACAAGCCCGACGAAACGATAGAAATAAAGAATGAGAAACTTGCAAAAAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAGAACTGTAAATTTACAAGAACGATATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTGGGAAGAAAGGAACAAAACATATAAAAATCAGAAAGTTAGGTTAGGTGC # Right flank : TTATTAACAAGCAAGGGAATGGAATTGAGGGAGGGGAAAATGGAAGGGGGAACACGCCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGCAACTATCTCGTTATCAGTGCATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGGGTGGTTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGGTCGGACGGCAGCACAATGGCTGCTTTGACGACAGTGCGACATCGGCAAGGGTGGTTGGGGCTTCTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCTGTTGGTTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGTTTTCTCATATCGTTATCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //