Array 1 601904-599197 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020400.2 Moraxella catarrhalis strain FDAARGOS_213 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 601903 28 100.0 32 ............................ AATCACTGCGTACGCCGATTGGCAAGATTGGC 601843 28 100.0 32 ............................ AGTAATTTGGGTAATCTTTGATAACCCAAGTT 601783 28 100.0 32 ............................ ATCCGCCATCAATGAGCCAAAGAAAATCAACA 601723 28 100.0 32 ............................ GTAAAAAGTCGGTCAATGCAACGCCTGCCCCT 601663 28 100.0 32 ............................ GATAAGATATCAAGCACTTTATCAGCGTCTGC 601603 28 100.0 32 ............................ ACAGGGGATTTGTCCCAAAAATACAACCAAAT 601543 28 100.0 10 ............................ CTGGCGTTTT Deletion [601506] 601505 28 100.0 32 ............................ AGTGATGCTATCCCATGCGACAGATATAGGCA 601445 28 100.0 32 ............................ ATGGTGATAACCTCACTTTTTTCAATGAGTTC 601385 28 100.0 32 ............................ TTGATGTACTAAAGTCGTGTTAATAACATAAT 601325 28 100.0 32 ............................ TTACCTGATGATACCATTTCCAATTTAACTTC 601265 28 100.0 32 ............................ CTGCCACCTCACACAGTGGCAGAGTTTACCCA 601205 28 100.0 32 ............................ TTTAACTCAAGATACGGCAAACAATTAATACC 601145 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 601085 28 100.0 32 ............................ AAGCATTAATAAAATTCCAAGCATTGAAAGTG 601025 28 100.0 32 ............................ AGCTTTTTAAAATACTGCTTGATGGATTCATC 600965 28 100.0 32 ............................ TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 600905 28 100.0 32 ............................ AGCTTTTTAAAATACTGCTTGATGGATTCATC 600845 28 100.0 32 ............................ TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 600785 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 600725 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 600665 28 100.0 32 ............................ AGTTCCTTGCCGACCAACCCCATAAAATGGGT 600605 28 100.0 32 ............................ ATATCCAGCGCCATTACCAGCCACCCACTGCA 600545 28 100.0 32 ............................ ATGATTGAAAATGGGGCTTTATTTTAGGAGAT 600485 28 100.0 32 ............................ AGTATAAGTATTCTATGCTGTACCCAGTGCCA 600425 28 100.0 32 ............................ TAGCAAATCAGCTTAATCTTTTTATTAAAGAC 600365 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 600305 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 600245 28 100.0 32 ............................ TTCGTAGGTGTAACTATCACAAAGGTGAACTT 600185 28 100.0 32 ............................ TCATATTCAGCATTATAATTGACATGGCTGTT 600125 28 100.0 32 ............................ CTTGATAATTTCTAATTGCGCGGCGCGTATAT 600065 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 600004 28 100.0 32 ............................ AATATCAATATCATGTACAGTTTTCATTAAAT 599944 28 100.0 32 ............................ TAGGCAATGAGCCTGAAGTCAAAACATTCACC 599884 28 100.0 32 ............................ CACACACGCACATCATTTCAATAGATTTTATT 599824 28 100.0 32 ............................ AATCATACTTGAGCAATACGAAAACAAGAAAA 599764 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 599704 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 599644 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 599584 28 100.0 32 ............................ AAAAAACCGTTGTGGATAAAATCGCTCCTCTA 599524 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 599464 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 599404 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 599344 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 599284 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 599224 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 46 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAACAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //