Array 1 83634-79041 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMUF01000003.1 Nitrosospira sp. Nsp1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 83633 37 100.0 30 ..................................... CGGCGACAGTGTTATAGGAGGCGATAATAG 83566 37 100.0 30 ..................................... TCTCAACGCCGTCCACAGTGTGCTTCCATG 83499 37 100.0 30 ..................................... CCGGGCATGATCATAGTTCTAGGAATGTGG 83432 37 100.0 30 ..................................... CTCACAAGAGGAATTGCGCCGGTCCGCTCA 83365 37 100.0 30 ..................................... TGAAAGTGCTAAGATAAACCGTGCCGCCGT 83298 37 100.0 30 ..................................... GCATTGCGCTAGCGTTTCCCACTTATCATT 83231 37 100.0 30 ..................................... ACTTTCGACAGCTTCACTATCGCGACTGAA 83164 37 100.0 30 ..................................... GCCGACTGGCGCCGAGGCGGGGATGGTCAT 83097 37 100.0 30 ..................................... CCCTGTGCTTGTGTGAAAGTTGGCATCTAT 83030 37 100.0 30 ..................................... TTTGGGCGCGGAGTGCTGCGCGGTCTGGAG 82963 37 100.0 30 ..................................... TCTTGCATCTCATGATTCGCGGGCACTGAG 82896 37 100.0 30 ..................................... TCTGCCGCTTGGAGAGCGCATACGCTTTTA 82829 37 100.0 30 ..................................... CGTTTCCGGCTGGTCTACTACGAAATCATC 82762 37 100.0 30 ..................................... TTCGGGTAACACTACAAGCCCGGACTCCAT 82695 37 100.0 30 ..................................... GCGGCTGCACGTTCAGGACTTGACCGGGTA 82628 37 100.0 30 ..................................... GCCTGTTGCGGGAAGGAAGCGGGGCTATCG 82561 37 100.0 30 ..................................... GAGTCGCCGTAACGACCGACGGCCTGGGGA 82494 37 100.0 30 ..................................... CGCGCCCGGATCATGCCGCGCTTGATTGCC 82427 37 100.0 30 ..................................... CGCGGCTTCGTCGGTTCAGCACGGCGCCAG 82360 37 100.0 30 ..................................... CCGGGGCGTACCTGACATACCACCTGAAAT 82293 37 100.0 30 ..................................... AGGCCAAGGCATATGTCGATCTCGTAAACA 82226 37 100.0 30 ..................................... CAATCGTCGCTGTTATCGTAGCCAAACGTC 82159 37 100.0 30 ..................................... ATGCGGTGGTGTCGGGCGTGGTGGTAGGGG 82092 37 100.0 30 ..................................... CAGTAACCACAGCCTGCATCCGAACTGTCG 82025 37 100.0 30 ..................................... CCGGTACAGGACGCGCCGCCGTCCCCATGT 81958 37 100.0 30 ..................................... CTGAGGCCGGGAGAGTTCATCCACACATTC 81891 37 100.0 30 ..................................... GCTCATGCGCGAAGATAAAGACGGCGGCAT 81824 37 100.0 30 ..................................... GACATACCCTGAGATGTGGCGCGCTTGAGT 81757 37 100.0 30 ..................................... CATTTAGGCTACCGGGCGGCTACAAGGCGG 81690 37 100.0 30 ..................................... ATGTCGCCACGCCTGAAGCAACCACATTTG 81623 37 100.0 30 ..................................... CATGCTGTACCGATGGGATGCGAAAAATTA 81556 37 100.0 30 ..................................... TGTTTAATATTCGTCAACGCGGTTTCAACC 81489 37 100.0 30 ..................................... TTATGGTAGCGCGATAAAAACCGTAGGCAC 81422 37 100.0 30 ..................................... CTTCACGCGAGACAATCGGGAAAAATACAA 81355 37 100.0 30 ..................................... CGACGGATCGAGGGAAGGCTACTCTTACTA 81288 37 100.0 30 ..................................... TACTAGCGGTGCTGGCTAGTGCCAAGATGA 81221 37 100.0 30 ..................................... CTTATCGGGTCGGCGAGCGTAAAGAAGCTG 81154 37 100.0 30 ..................................... ATCTCGTGCCACACCCAACTGAGACGTGAT 81087 37 100.0 30 ..................................... GCGTACACACGCCTGACTTCGGCTACGCAT 81020 37 100.0 30 ..................................... CGGATGCGATGGTATAGCGGTCAGCGTCTT 80953 37 100.0 30 ..................................... TGCCAAGCACGTTGAACGCGAAGAGCATTT 80886 37 100.0 30 ..................................... TAAATGTCTCGCTGGGAACAATCCCGGCTG 80819 37 100.0 30 ..................................... AGCATCCGAGCGTTCAGGGTTACGCGGAAA 80752 37 100.0 30 ..................................... CGTCTGGTTGCTAGGGTCGGCATCGAGCTG 80685 37 100.0 30 ..................................... GTCTCGTGCCACGCCGAGTTGTGACGTGAT 80618 37 100.0 30 ..................................... CGCATAACAAATCAATACCCAAACGCATTA 80551 37 100.0 30 ..................................... CCATGTTGAGCGGTGGCGGCGGTGACAACA 80484 37 100.0 30 ..................................... CGGATGGTGTACGTGGGCTTTTTGCGCGCT 80417 37 100.0 30 ..................................... CGCAACTGTTCCGGGCGGGGCTTCTCACCC 80350 37 100.0 30 ..................................... TCCGCGCCGGTCGAGGATTCTCGGAAGTCA 80283 37 100.0 30 ..................................... GCGCGGAGATGAGTGACGATATCGCTCTGC 80216 37 100.0 30 ..................................... GAAGCTAAGCGTTTAGCGCCTGTGCTATCA 80149 37 100.0 30 ..................................... ATCGCGTCAAGCATGATCCGGTGTTCTCGG 80082 37 100.0 30 ..................................... CGGGTGCGCTCAATGGAAATGCCGCCTACT 80015 37 100.0 30 ..................................... TCATCCGTTCAAGGTGACCCGGTGGGCGCA 79948 37 100.0 30 ..................................... CGACGGCGCAACGCATCCAGATCGCCGCGT 79881 37 100.0 30 ..................................... CGATCGACATAAGAACGCGAAGCGCTTCTT 79814 37 100.0 30 ..................................... GCTTGTCCGACGGCGTCCATAATGTTGTAG 79747 37 100.0 30 ..................................... TTATGGCAACACGATAAAAACTGTCGGTAC 79680 37 100.0 30 ..................................... ACAGAGCGACGAATAGAAACCAACCCCATC 79613 37 100.0 30 ..................................... GGTATTCGGAGAGACCGCGCCGGCGGGATT 79546 37 100.0 30 ..................................... CGGTAGACGTCTTTCGTGCGACTAGCGGCC 79479 37 100.0 30 ..................................... CACGGTCACCGCCTGGCCGGTATTGCCGGT 79412 37 100.0 30 ..................................... TATACCCAGAAGGGACGTTCGCGAAAGGCG 79345 37 100.0 30 ..................................... ACCTCGTTATCCTGGTAGGTGCGAGGCGTG 79278 37 100.0 30 ..................................... GGAACCCGCCGAGTACAAAGATCAAGGCGC 79211 37 100.0 30 ..................................... TGTTTCGAGTTTGGCGCGGAGGGCGGCTAT 79144 37 100.0 30 ..................................... ACCGAGCCGGGCGGACCCCGGCGCCATGAC 79077 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================== ================== 69 37 100.0 30 ATTGTAGTTCATCCGGGGTGAGAGAGGGAGCTACAAC # Left flank : ACGCGATAGAAAGCCTTGCAAGAGTGTATGACGGCGGCAGCGAAACACTGCTGGAATTGCCCACACTCATTGGGCAGGAACAGCACCACTTAGATTGCTGAGCCATGAGCACGGAGACACGACGATTTATGCGCTTGATTGTGCTTTTCGATCTACCCGTTGTCACCAAGGCCGAGCGCCAAGCCTACACTCTGTTCCGCCGTTTCCTAATTAACGATGGGTACGATATGATCCAGTTCTCGGTGTATGGTCGTATCCTGAATGGCAACGATGCGCTGGAAAAACACATGAAGCGATTAGTAAACAGCCTGCCACCCGAAGGCTCCGTACGCTGCCTGGCCGTCACCGAAAAGCAATACGCCAGCATGAAACTCTTGGTCGGCCTGCCGCTTTTTCAAGAAAAAGCACTGAAGGCCGACCAAATGCTGCTATTTTGAAGAGCGATTTTTCAAACAGAACGCCCGCCAGATTGAGGTCTGGTGGGCGTTTGCGTGAGAGCT # Right flank : TGATATGGGAATGGACATAAAGGCAATGTATTGATTTCTTTTGAAAATCTGAGTACGTATCGTATGGGTCTAGCGGTCGGAACGCTTCTTATCAATCGACTTTGACCTTTTATATTCTTTGGATTGAGGAAGTCGGTACGGCGGTCTTGTTTTCCAGGACACACTGAAAGAGTAAGATATGTATGTCGACACTCGACTTTGGATTACAAGAAGGCACAATCATGAGCAGTGAGCAGCACATGCGAGAAGCCCTGGCGCTGGCCCGGGACAATATTAAGGCCGGGGGTCGGCCTTTCGGTGCGGTGCTGATATACCAAGGGCAGGTGATCGCCCGGGCGGTAAATGAGATTCATAGTACCCAGGATCCGACCTGTCACGCCGAAATGCAGGCGATACGCAAAGCCAGCCGTGTGCTGGGTCGTCCTGATCTTGATGGTTGCGAAATCTACGCCAGCGGTCACCCATGCCCCATGTGCCTGGCCGCAATGCACCTGTGCGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTAGTTCATCCGGGGTGAGAGAGGGAGCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 1 77579-83210 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMUF01000014.1 Nitrosospira sp. Nsp1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 77579 37 100.0 35 ..................................... CAATCAGCTTGGAACTCACCGCGGAAACCATCTTC 77651 37 100.0 35 ..................................... AAGCATATTACTGCGCAGGTTTACCGCGAAGCACT 77723 37 100.0 36 ..................................... ATTGCGGGCACTGGCGTGGGATGGACGGTTAAAGAC 77796 37 100.0 36 ..................................... AAGAACCTCGGCCACTTCTGTCAAGACGTGATGCGG 77869 37 100.0 36 ..................................... AAGTTGGTGTTCCGTCTGGACGGCCAGCCGCAACTG 77942 37 100.0 35 ..................................... CCGAGTGCCGGTATTGACCTTGAAGAGCGCCATCC 78014 37 100.0 37 ..................................... GATCTTGCCGGCGGGTACGGCATGGATATTGCAGGAG 78088 37 100.0 35 ..................................... CGGATCCATGGCGCAGCGGATCGCCAAGATCGAGC 78160 37 100.0 34 ..................................... ATGAGCAAGATCAAGGTATCAACGCTTACCGGAC 78231 37 100.0 35 ..................................... CCACTTCCACCTAAGTTGGCATACTTCATCTTCCG 78303 37 100.0 40 ..................................... ATTCTAGGATGGCTGCGTCTTGCTCACCAAGTGGCAAGAG 78380 37 100.0 34 ..................................... CTGGGCCATCTCGCGGAGCTTGCCGATCGGTACG 78451 37 100.0 35 ..................................... GGCTCGGCAGGCTTAAATCTGGCGGGCCGCTCCTT 78523 37 100.0 34 ..................................... TCCGCGATGCACGGATTTGCTCTGCTAGGCTCAT 78594 37 100.0 35 ..................................... TTGTTTGCTCCTTGGGTTGAATTTGGATAACCGGG 78666 37 100.0 34 ..................................... ATGCTTGAGTAAGATTGGAAATCTATTCTTGATC 78737 37 100.0 36 ..................................... ACAACCTCATAAGCAAACTCGTTGTAGGCCAGCACG 78810 37 100.0 36 ..................................... GATTTCGACTTGTCCAAGCCTGCAATGGCGGTGACC 78883 37 100.0 35 ..................................... ATCATCTCAATTTGCGATCCCGACGCTTCCAGGAT 78955 37 100.0 35 ..................................... TTATCCCCTTGCTTGTCTATGCTGTACGCATAGAG 79027 37 100.0 36 ..................................... CAATTATGTCGGGTCGTCGGCTTCCGGCGTTGCATA 79100 37 100.0 35 ..................................... TTTTTGATTGCTGCCGGGCTTCGGCTTATGAATGG 79172 37 100.0 35 ..................................... AGACTCTGGAGCCTTGGTTGACGACATTACCAGCC 79244 37 100.0 40 ..................................... TCAAAATGAGAACTTGCAGGTGTGGCTGATCCATCATAGC 79321 37 100.0 35 ..................................... TTCCTTCGAATCCACCATTAGGGGCTCCATCGTCA 79393 37 100.0 36 ..................................... CTGTCATGAAGACCGGCTACATCTTCGTCAAGGCTG 79466 37 100.0 37 ..................................... TACGGCTTGGGAGGTAGCCTCAGCATCTCGGCTAAAG 79540 37 100.0 35 ..................................... ATAGGATGCTCTGATTATCGGTTCGGGATTCTGGG 79612 37 100.0 35 ..................................... TTTCTTGGCCACAACCGCTAGGCGTTGGGTTTCTG 79684 37 100.0 36 ..................................... ATTGCCTACCCTGAAACTGGCAGCAGCTATCGAAGG 79757 37 100.0 35 ..................................... TGAATTTAAGCAAGTATGACCGGACCACAGGAATA 79829 37 100.0 36 ..................................... GAGATTATTACCGAGCCTGATGTCCATCAGCCGTTC 79902 37 100.0 34 ..................................... TGTTAGGCGATCCGATCTTGGTGGGTGTGGCTAC 79973 37 100.0 35 ..................................... GATCTATGGGGCATTAGCCAATCTCCCTGGTGTGG 80045 37 100.0 37 ..................................... TTTGACAAGCCCTTCACCTCAGCGGTTCTATCAGCCC 80119 37 100.0 34 ..................................... TTCTTCAATCCACCCCTCTACCACTTGCTCGATG 80190 37 100.0 34 ..................................... AGTAGCTGATCCACGCGGTAGCGGCTTCGCCGGG 80261 37 100.0 35 ..................................... GTCGTAACGGCACTCTTCCGGCCCATAGCCTCGGA 80333 37 100.0 36 ..................................... AGAGCGGGGATGTTGTTGACGGTGCCCATCAAAGAA 80406 37 100.0 35 ..................................... AAGCGGAGAATCGGAATCGCGCACATCTTTTCCAG 80478 37 100.0 36 ..................................... ATTATGTCCGGAAAGAGGTCGTCACCATAAACGAGG 80551 37 100.0 35 ..................................... AAATGACCGGCTCAACACCAAACCGTATCCCCGCG 80623 37 100.0 35 ..................................... ATTGCCAGCGATATCGACCATCGCCGTGAAATAGC 80695 37 100.0 37 ..................................... AGAACAGGAATCACGGCGGTGGAAGAGCGCGGCGCAG 80769 37 100.0 35 ..................................... ACCGCATGCCGCCGTCAGAGGATCGGTGGAAAGAG 80841 37 100.0 35 ..................................... AATTTCCGCACATCCCAGAACACTCATCTCCGAAT 80913 37 100.0 37 ..................................... ATCCGTTACAGGTTTTCCCATCATTACGCCCCCAACA 80987 37 100.0 37 ..................................... GATAGCGAACGGGACCGTAACGCCGCCCGCATTGTTC 81061 37 100.0 37 ..................................... CTACTTCCAGATCGGGACCATAATCCGGTTTATGCAG 81135 37 100.0 36 ..................................... CTGAGAACAGGGCCTTGAAATACCCCGTATCCGCCA 81208 37 100.0 38 ..................................... AGGGTTTTGGATCAGGTGATCTAAAGGCCATGGCTATG 81283 37 100.0 35 ..................................... AACGTTGATGATAAAGATTTAAAAGTGATGTCGGA 81355 37 100.0 35 ..................................... CGATGTGACCCTGAATTTTGCCGGTCAGTCGGTAA 81427 37 100.0 37 ..................................... AAAATATCTTCTCCGAAAGGCTTGTGCTTCCCTTAGG 81501 37 100.0 38 ..................................... AACATGCATGAGGTTACCAAGTCCATGCTGGAGGCCAT 81576 37 100.0 37 ..................................... ATGATAAGAAAGAAGTTCCGGTCAACGAGTACAGCAA 81650 37 100.0 35 ..................................... CAAAAAGAAGCCAAATGAGGATGATGACCTCTTGG 81722 37 100.0 36 ..................................... TTATGCAGAGACCTTCCCCAGGATTAATAACCGGGC 81795 37 100.0 35 ..................................... TTTTTAGGTCGCTTCTGAGTCTGCCCGATAACAGC 81867 37 100.0 36 ..................................... CGCCAATTCGACCATCACGCTGAAGTTCAAACAGCT 81940 37 100.0 36 ..................................... AGTATGGAAGGTATGGAGGTATGGAAGAGCCAATCC 82013 37 100.0 36 ..................................... ATCGCCACGTAACAACGCATAGCGGCAATGAGCGCA 82086 37 100.0 36 ..................................... ACGCCAGAAATATTAACCCGCACGTCCACGCCTGCC 82159 37 100.0 35 ..................................... TTTTAAATGGGCGCGCCCCTCCGATACTTATCATT 82231 37 100.0 33 ..................................... CTGATATTCCCCCAGAAATGGGTTTATTGCTTG 82301 37 100.0 36 ..................................... TCGCCCTCTTCGACCGCTCCTGTTTTTGGTAAATCG 82374 37 100.0 35 ..................................... AATATGACCCCGGATAAAGACCTTGGCGCCTTTAC 82446 37 100.0 34 ..................................... GGCAATTTCAGCAGCAGGGCGGTGCGCCTGTAAC 82517 37 100.0 36 ..................................... AATGGCGATGGGTATCCAGTTGCCGCCTGTCGATCT 82590 37 100.0 35 ..................................... GATTGGACAGAACGACCCCGTGGCTCTGGTTGCTG 82662 37 100.0 36 ..................................... CACACGTATTCGAGGATCTGCCGCAGCTTCGACGTG 82735 37 100.0 36 ..................................... CAGCGTCGTGAAAGGGCGGTGCCATGTTCCGTCCTC 82808 37 100.0 37 ..................................... GATTGCATGTCCGGGATGCTCATTGCTTGAGTTTCGC 82882 37 100.0 34 ..................................... TTCGGCGAGATCAAGAAAGGCGTCTTTGTCACCG 82953 37 100.0 36 ..................................... ACCACATCATCGAAGCGCGCAGGGTTGAGCTACGGC 83026 37 100.0 37 ..................................... CCAGCCCCGAACAGATCGGTGGCCTTTGTCGCTGTAT 83100 37 100.0 36 ..................................... AGCCTCAGGCTGGGCTGGCGTTTCAGGCCATAGGCG 83173 37 91.9 0 ...............................CC...T | A [83204] ========== ====== ====== ====== ===================================== ======================================== ================== 78 37 99.9 36 GTAGCGCCCGGTGATACAACCGGGCGAGGATTGAAAC # Left flank : CGGATACTTACCTTTTCTAGCGAGATAGCCTTGCTCATCATAGTAACTTACGACGTTTCCACTGAGACCAGGGAAGGGCGCAGAAGGCTGCGGCGAGTAGCTAAAGTATGCGAGGGGATGGGGCAGCGCGTCCAGAAATCGGTGTTCGAATGCAGAGTTAATCTAATGCAATATGAAGAGCTGGAGCGAAGGCTATTAGCAGAGATCGAACAGAAAGAGGACAATCTTCGAATATACCGTTTGACTGAGCCAGTCGAACTGCATGTGAAGGAATATGGAAATTTCAAGGCGGTAGATTTTGAGGGACCTTTGATCATTTGAAGAGCGCGAACCCCAAGCTACGGTGAAATCGCCGTAGGTTCGCGCTTCCGCTAGACGCATGGTATCTATGACTAATTTTGCCGAAATTTCATGTTTCAGACCCTTATTCAGACTAGGAGCAAGGGGTTCGCGTATTTGTAGCAAAACTCGTCATTTTATTATGTGGTTATAGCTGTACT # Right flank : TAATCTACTATTGGAGATCTGTCATATTGGCATTGGTATATTGTTCTGAAGTTACCTGAAGTGCATGCTGGGCATTTTTCCCGTTTTACAAACCAAATTTTGCTCATATTCCTCTTCCTGTAGAGCTTCTTGCAAAACTCGCCGCCTGAGGGAATTAACCGGCGAATGGGATAGAGAAGAGCGGCCATTACTGGCAGAGCGAAGTTTCCAAGGATCTCGCCGACGCTTGAAATGAATACTACGCAACGCACAGGACTAATGCAACGATGGCAAGTGGTTCAGCATGAGTTAACCGTCATTCGGCCGGCCGTCAATGTCGGTTTAAAACCGCAAACGTTTGCAATATCAAGGAGTGTTGCTTCGGGGGTGTGTGTGCTGCCGCACGGAAGCGGTTGATTTTCAATATTACGCTGAATTCAATATCTCTGGTCTCGTGAGAGATGGACCCAGCCCGCTGTTGAGAATTTTTTCATACAGCGTTAAGGAAACACCTACTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTGATACAACCGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.40,-13.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 1 36628-39058 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMUF01000015.1 Nitrosospira sp. Nsp1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36628 28 100.0 32 ............................ TGGAACACTTCGGCGCCAGCGAAGCGGCGGCA 36688 28 100.0 32 ............................ TGTACCCGGTAACGTGTTCTGACGGAATGCTA 36748 28 100.0 32 ............................ TTGCCGTAGCTGTTCTTGCGGACACTGATGTA 36808 28 100.0 32 ............................ TATTCAAGGCAGCCCAGAGTGGCACCAGTTCC 36868 28 100.0 32 ............................ TGAGAAACAACGTTACCAAGATCAAGTCATTT 36928 28 100.0 32 ............................ TACGCGCTCAATAAGCGGAACAGACTCGTCAG 36988 28 100.0 33 ............................ CATCGAAGAATGCACATCTCTTTACAGCGCATC 37049 28 100.0 32 ............................ ATATCGTGCGCGATCCTTTCGTCAGACCAGCG 37109 28 100.0 32 ............................ TCAACTCGCTCACCATTTCGATATAAACTTTC 37169 28 100.0 32 ............................ GCTTCCGGCGCCAAGGGCTGGCCCCTTTGGGT 37229 28 100.0 33 ............................ AGCCAATGAATGAATCGCACGCGGCTGCAAAAT 37290 28 100.0 32 ............................ GGCATATTCGGCGGTTTAGCTGCCGCGGTCAG 37350 28 100.0 32 ............................ GCGGCAAATCCTCGAAAGACATGATCGGCGTT 37410 28 100.0 32 ............................ GGGCGAGTTGATATAGATGTCCAACGCTAATA 37470 28 100.0 32 ............................ GATGATGACTTTGCGCTCGCCGAATCTCAATC 37530 28 100.0 32 ............................ GATACCGCACAGTTACCTTTTTCGGGGCCATG 37590 28 100.0 32 ............................ CATTGCGGCGAGGCGAGTTTCTGCCAGCTTAT 37650 28 100.0 32 ............................ TTACCGACAGGACGAGGATCAGCGAGATCAAG 37710 28 100.0 32 ............................ ATTGCAGACATCTATTTTGAGACGAGGATAGA 37770 28 100.0 32 ............................ CGGTCCACCATCACATCACAGCCAAGATCTCC 37830 28 100.0 32 ............................ GACCGGACCTCATTCCACTGATACCTATCCAG 37890 28 100.0 32 ............................ AGCAACGATTACATTCTGATCGCGATCTACTG 37950 28 100.0 32 ............................ GGAGGGGAAGTGAGCTCTGATGACAAGGTTGT 38010 28 100.0 32 ............................ ATCAGCCCACTTCTCGAACTCTCTATTTCCCA 38070 28 100.0 32 ............................ GACACGCTCAGATGTAGCAGGCGGGCTGCTTG 38130 28 100.0 32 ............................ GTATTACGTGCGCGAGATGATCCATTCCTCGA 38190 28 100.0 32 ............................ ATATGGTTCCTGCGGACATTCATCGTATTTTC 38250 28 100.0 32 ............................ ACGTAAAATTTCCCACCTGGACCAGATGCGTC 38310 28 100.0 32 ............................ TTGATGATGTTCGGGACACAAGGGAGATACCG 38370 28 100.0 32 ............................ TCTTCGGCTGGCGTGGCATGCACGGACAGTCC 38430 28 100.0 32 ............................ ATTCGCGCCGATCAGCTGGTGGAAACCTTCGG 38490 28 100.0 32 ............................ GTTGATATGCCAATTAAGGACTGCCTGCGCTC 38550 28 100.0 32 ............................ GATTACCGTGTTCGTTGTTATGCTTACGATCG 38610 28 100.0 32 ............................ TAACCGGACTGTTTGTGTCGATCAGCTTGTGC 38670 28 96.4 32 .................T.......... TTGAGCCATGGAGTGTTCAATAGCACTTGCTA 38730 28 100.0 32 ............................ AAGGTCGGATAGAAGCGGTAAGTGGCGTGTAC 38790 28 100.0 32 ............................ TCGCAGATCGCGCCCGCAGTGAGCGTACCTTT 38850 28 100.0 33 ............................ GAGAAACACACGAACTCAAGACGAGAGTTTCAG 38911 28 92.9 32 ...........C.....T.......... GCAAGGGCGTGGCGGCCACCGAGTCTTTCCGC 38971 28 96.4 32 ...........C................ TTCAGCATTCCGGCTTCAAAGTGGTCTGATGT 39031 27 92.9 0 ...........C...-............ | T [39057] ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.5 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TCGCACTTTCGGCTTTGATGGCGAGCGACTGGATGACTGGCATACGCGATCACGTTACGCTGACGCAACCAACGCACATCCCGGAAAATGCCAAACATCGTGTCGTGAGGCGCGTGCAGGTCAAAAGCAGCCCGGAGCGATTGCGTCGGAGGCTGATGCGACGCCACAACCTGGACGCCCAGGAGGCCCGCCAGCGTATCCCGGACGAGCTTGCCCGTTTGGTGAAGCTGCCTTATGTGCAATTGCGGAGCGCCAGTACCGGGCAATCCTTCAGGCTGTTCATCGACCATGGGCCAGCCCAATCCCATGTAACCGAGGGCGACTTTAACGCCTTTGGCTTGAGCCAGGCGGCGACAATCCCCTGGTTTTGACCGTTTTTTTCGGACCTGAATTCGTTCTTTAAAAATCAATAACTTATCTTTTGCCTGAATTTTTAGGTAGGCACGCTGTATTTTGTTCAATCCTGTTGGATGATAAGCATTTGCACGACTTATGATTTA # Right flank : AATTTACTGGATCAATATATTGCCTTTTATGTTGATTCAAAATCGTGGACTGAATCAACACGCATGCTACCGGGACAAGCACAAATGGCAGAAAGAGAAATGTTTTCGCGTCAGCGACATTAATTAGTAATAGTAGTAATGATAACGATTGTTAATACGCTAAAGTGCTTGAGGAATTTTCGGCATCCGATTCCCATCCTGTAACCGGCGCGGTATGATCCGGTTTCCCGAAATTCCCCACTTTATGGATTTACGATGAACTCGATCCAGTCTCCCGCGAGTGTAAAAAGAGGCCTTCCCTATTGGGGGGTCGTCTGCTGTGCCCTGTTTGTCGCCGCGTCTCAGGTTTTCTTGAAAATGGGGGTGGACGACACGCAAACTTTTCATAGCGGGCTAAGCTGGCTGGAGATTCAGGGACTTGTGTCAGGGTGGATCCTGGCGGGAATTCTCTGTTACATCATCAGCTTTGTCTTCTGGTTAAAGGTACTCAAGGTCCTTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29158-33395 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMUF01000020.1 Nitrosospira sp. Nsp1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 29158 28 100.0 33 ............................ CATCATGGAATTTGCAATGGAAACAACCGCGGA 29219 28 100.0 33 ............................ TCATTAGCACTCGCCCTCACAGCGTCCAAACTG 29280 28 100.0 33 ............................ TACTGTATGGGTTTTGACCGCCATTTCTAAATC 29341 28 100.0 33 ............................ TAATCGTATGCATTATTTTTTAAACCGGGAAAA 29402 28 100.0 33 ............................ TCGCTGAAGAGCTATCAGACGTAACCAGCCAAG 29463 28 100.0 33 ............................ TAATTCACGAACGATAATTTCAGCCCCTCAGAT 29524 28 100.0 33 ............................ TAAACGTAGTGGTGGCACCCGCCAATTCGAAAA 29585 28 100.0 33 ............................ TAATCGTATGCATTATTTTTTAAACCGGGAAAA 29646 28 100.0 33 ............................ CTAAAACAGGATTAGACTTTTACCAGAAGGATG 29707 28 100.0 33 ............................ CTCGACAAACACGAACGAGTCATGGTACAAATA 29768 28 100.0 33 ............................ CTTTCCATAGCAGCTATTGAGAATGAACTTAGA 29829 28 100.0 33 ............................ CGTACATTATCTATGCCCATAATGGGGGAAAGT 29890 28 100.0 33 ............................ TGGAGCCGCTCGCCTTCGTGGTAATGTCACAAG 29951 28 100.0 33 ............................ CTGCAATTGGCAATGCGTCCGAGTTCGTGGTTT 30012 28 100.0 33 ............................ CCACTTCCCCCGAGTCAGCGCCGGAAAAGGTAA 30073 28 100.0 33 ............................ TGTTATAGGTTAGGTTAGAGTATTTATACGCGC 30134 28 100.0 33 ............................ CCAGCGGGGGGAGTCTTTCACGCTGGCTGAGCT 30195 28 100.0 33 ............................ TCAATCGGGCCATAGCGGTCATGGAATGGGTCC 30256 28 100.0 33 ............................ CATGGACATTATCCGGACAATGCGCGAGGGGTT 30317 28 100.0 34 ............................ CGGTATATGACTGGATCTCCTTGAGGGTATTTTA 30379 28 100.0 33 ............................ CCTTCTTTCTTCGGATTTACCCTCAGCCTGTTC 30440 28 100.0 33 ............................ TGATGAGCCTTATAAGTTTGGCCGAGCCACTAT 30501 28 100.0 33 ............................ CTTTGAATTGCAAGTAAGGCTAGTAATGCTTCC 30562 28 100.0 33 ............................ CGCTTTCTATTGATGCGTCGCGTATTGTAAGTC 30623 28 100.0 33 ............................ CCGAGTAGTCTTAAACCTTTTATTTTACGGAGA 30684 28 100.0 33 ............................ CATCAGATGAGCAGGCTCCATTTTCTTACCGCC 30745 28 100.0 33 ............................ CCCATCTGATTCTTGCTTGTTTGTAGGCTGTCC 30806 28 100.0 33 ............................ TCGCCTCAGAAGGGTCAAGCGGATTGATACCCA 30867 28 100.0 33 ............................ TTTCAGAAGCTCGGCCCTGGACGTGATGCGTTT 30928 28 100.0 33 ............................ TTTTGTAGTCATAAAACTCGTTCGGATTCTGAC 30989 28 100.0 33 ............................ CTCCTGAGAACCGGCCTCCGTCATCTTCGGAAA 31050 28 100.0 33 ............................ CGTATTTCATTCAAGGCCACAAGGCCTCCGTTA 31111 28 100.0 33 ............................ CTATCAGGCCGTGTGGATAGCCGGAATTGTTTC 31172 28 100.0 33 ............................ CTTATGAAGGCAAGAAACGGGCTCGTATCGTGG 31233 28 100.0 32 ............................ GCCGAGTTCCTTTAAGGAGGCAGTTATGGATT 31293 28 100.0 33 ............................ CAAGGCGGGGCGGGTGTAGGCGCCTGGAGGGAA 31354 28 100.0 33 ............................ CAGCGCAGCCCCGCCAAGCAAAAGCGTGGTGGT 31415 28 100.0 33 ............................ TCGTCCATGCTCTCCCCCGAAAAACGGGACTGG 31476 28 100.0 33 ............................ TTAGGTAAGCATAAGATTCGTGACTCTTATGCG 31537 28 100.0 33 ............................ CGTTGTCTTACCTGATTCTGTGACGCCGCAAAT 31598 28 100.0 33 ............................ CCGATAGTTACATCCTGCGCAGTGTCTCCATTG 31659 28 100.0 33 ............................ CGGTGGCATCCGGTCTGGTGGTGGTGATGGGCC 31720 28 100.0 33 ............................ TATTATGAGGTTTCATTATGAAAATAAAGAATC 31781 28 100.0 33 ............................ CGCCAAGGGATTCTCACCAATACCTTAACGGGG 31842 28 100.0 33 ............................ TTACCGCTTACTGCTCACTCGGTTGAATGAGCA 31903 28 100.0 33 ............................ TGCGTAAAGGAAAGAAAGCCGCCGGTCTTAGCA 31964 28 100.0 33 ............................ CCGAAGAACCTGAGGAAGAAGCCGAAGAAGAGC 32025 28 100.0 32 ............................ CAAGAATCACATGCTTTGCTGAATCTTGGTGC 32085 28 100.0 33 ............................ CCTTTTTCCGGGTTGCGCCTGATTTTCTATCAG 32146 28 100.0 33 ............................ TGGGTGAACGGAAAAGAACGTTTCTTGCGCTTC 32207 28 100.0 33 ............................ TGCTTTGCTATCACTCAGCAGCGCATCGATGGC 32268 28 100.0 33 ............................ TAGAGTCAGTCCTTCCATGATTATTTTCCTTTA 32329 28 100.0 33 ............................ TAATTAATTCCCGTTTGGTCGAAGCTAAATTAG 32390 28 100.0 33 ............................ CATTGCACCGTCGAAGCGCAAGAAACGCTCTTT 32451 28 100.0 33 ............................ TTATTCCAGCTCGAGGCTATCGTTACTTGATGA 32512 28 100.0 34 ............................ CACCCGCCTGCAGACCATTGCGCTCATCCATGCA 32574 28 100.0 33 ............................ CACTTGCAGCTCGAGCGCTTCCAGATCTGTAAG 32635 28 100.0 33 ............................ CGGATTGCGTTTATACGTTTGAGCTGGTGAGCG 32696 28 100.0 33 ............................ TTCGCCTGACGCCTTGCGCCTGGGCGTGCCATC 32757 28 100.0 33 ............................ TGTTGCCACGCGCATCCCCATATATGCCAACAG 32818 28 100.0 33 ............................ TGCGGAGTTCCATCATGTTGCGGCTCAGCCACG 32879 28 100.0 33 ............................ CTGCGATCCACCGGTCAATAGCATGTAGGCGCC 32940 28 100.0 33 ............................ TATCACTGTCGAGGTGACAATTGCTGGCGCCAC 33001 28 100.0 33 ............................ CAGGCTGGAGAGGGAAAGGAACGCCGCCGCAGG 33062 28 100.0 33 ............................ TATTACAACGATCTCTACGAGATCTCAATTAAG 33123 28 100.0 34 ............................ CTACAGTCTGAGGCAAGTGACCGACGAGAACGGC 33185 28 100.0 33 ............................ CGAAAAATAAAACGTTAATCGAAGCAGGTTTTT 33246 28 96.4 33 ...............C............ CCAAAAAGCAAGGCGCGGGTCATGATCGAGTTC 33307 28 100.0 32 ............................ TTACAGTCTTGACGGCGGGTGATGCTCTTTGC 33367 28 100.0 0 ............................ | C [33379] ========== ====== ====== ====== ============================ ================================== ================== 70 28 99.9 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : GGACGATACAACAAGCACACGGTATCCGCCGCTTTTCGCCAGCGTGTCATTGAAGCAGATTTGTTGAGCAAAATAGGCCAGGACATCGAGACCATGTTAGGAGTGAAAAATGCTCGTAGTGATCGCCAATGATTTACCGCCTGCCGTGCGCGGGCGGATGAAACTCTGGTTTATTGAACCACGCCCCAATGTATTCGTTTCCGGCGTCAAGGACGCCGTTGCCAGAAAAGTTGTGGACTATTTGCACGATCATTGCCCTCACGAAAGCGGCTTGATGGTTTTTCGCCGTATTCCGGAAACCCCAGGTTATGAAATTCATGGCATCGGTGATACCAAGCGCGATCTCATCGAGATATCCGGTTTGCAATTGGTGATCGAGAAACAAATACTGTCCGGGCCAGCGAGCTAAATTATTAAATTTGCATGCGAGCTGTTTTAGGAGGCTCGTTACAAAACACAACTGGTACCGTTTTAGTAATGCTCATTAACAATTTGTAGGT # Right flank : CTATCCCTTTTGCCGCACGTGCAGCATACTCGACGTCTTCCTTACGCCCGTAATTTCTATGCGCATACTGTGCTACGCTTGTGAGTGCGAGCGCGACGAACGGAAAATCGGGTTCCGTTCACTTGGTTGCCATGTATGGGGGTCTGCCGTTCCCCCGCGCTCGCACCCTCATCTAACCACCTTGTAACGATCGCCTTTTATCCCGCCCGCAATTGCATCCGACAACAGCTTGAACGCTGTCCGCGCACTGTTTACAACTTTCCCTTTTGTGCGGTAGTTCAGTGACAGCACCAATTTGATTTTGCGCTTATCGGGGGACGGCAGAATATAAAGAAGATTCTCCGTCTCTGTGTCAAACAGCACCTGTTCCGGCACGGCCATTGCGTGCGACAGCGCCTTCCGTTACCGTCCCCCGCCCGTGGAGGGTGTTTCCGTGAAGTTTGAGAATCGCGATCACCAACTGGCGGATGCTGCGCTGGCCGGAAAGCGTCGCGGAACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //