Array 1 60020-60587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFKQT010000029.1 Pseudomonas aeruginosa strain 15958 scaffold29.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60020 28 100.0 32 ............................ TTATCCAGCGTGACTTTCTCTTCCTGCGCCTG 60080 28 100.0 32 ............................ CGAACTTGATCGGCAAGGCTCCTGAGCGGCGG 60140 28 100.0 32 ............................ TAGGGTTCAGCCGGCTGCGAGTGTCGATTCTG 60200 28 100.0 32 ............................ ACGTAGAGGTAGTATGCGCACCGCTCGACAAG 60260 28 100.0 32 ............................ AGTTCGTGGCGATGAAGCGAATACCACTCCTC 60320 28 100.0 32 ............................ ATGACAACCCGCATCGACCGGTTTTTCTTGTC 60380 28 100.0 32 ............................ AGATGATCGGCAAGCCCGAGGCTCCGACGCTG 60440 28 100.0 32 ............................ TGGCCGAGGATCCCGCCGGCGAAATCGAAGCG 60500 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 60560 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCTTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCAGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTTGCGCGTAAACGGCGAGGCTCACCGCCCGTCCCGCCCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTTAAAATCAATAACTTACCAAGACACGAAAAAAGAGGGTTGCAGACCAGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : AGCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGTGCGGTCTCGTATCTACGACAGCAGTAGTCGAAGTGCACAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGAGATATATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCTCTCTGCCGGGTCACGACACCAGCCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGACAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCCGTTTCATCGACGGTCTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGTGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 605604-606549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFKQT010000001.1 Pseudomonas aeruginosa strain 15958 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 605604 29 100.0 32 ............................. AGAGGCCCTTTATCGGGCCGGAGTTCACGGTC 605665 29 100.0 32 ............................. TTGGTCAGCGTCATTCTCGATGACAAGGTGCC 605726 29 100.0 32 ............................. CCTTCGGCAGGTGGAAAACGAAAGGACCGATG 605787 29 100.0 32 ............................. ACCTCGCCAACCTGGCCGGTTCGAGTTCCACC 605848 29 100.0 32 ............................. GGATACCGACTGGCGATTGGATCGGACGAGAC 605909 29 100.0 33 ............................. GGCGCCAGCGGCCTGCTGTCGGAGAAAATGAGC 605971 29 100.0 32 ............................. CAGTGTTAACCAGAAATGACGCAGCCTGGATG 606032 29 100.0 32 ............................. ATCAACCCCGCCCGGCTCTTCGACTGGCTCCA 606093 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 606154 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 606215 29 100.0 32 ............................. CTCGCGGACAACACCCCGAACCCCTACGTCGG 606276 29 100.0 32 ............................. CCTGCATCAGATGCGGCCTCCTTCACGCGGGC 606337 29 100.0 32 ............................. CTGCTCCAGGGCAGCAATTCCAACGGACTGGG G [606351] 606399 29 96.6 32 ..A.......................... ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 606460 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 606521 28 79.3 0 A..........A..C..-.....A....T | C [606525] ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAACATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGAGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGCGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 615721-616789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFKQT010000001.1 Pseudomonas aeruginosa strain 15958 scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 615721 29 100.0 32 ............................. TCTACGAAGCGGGAGAGGGCTGGCCCGAGGAT 615782 29 100.0 32 ............................. CTCAGAGAACAACTGGTTCACGACGCTTACGG 615843 29 100.0 32 ............................. CAGTTCTCGCTCTTCATCGCCGACGCCTGCCA 615904 29 100.0 32 ............................. GCTCATGCTGCTACCCTCGGGGCTATGCCCAT 615965 29 96.6 33 ............................A GATGACAGAACCAGCCAGCACAGCGGCAGGAGG 616027 29 100.0 32 ............................. CGGAAGGCCGACACCATCATGACCGGAACCAA 616088 29 100.0 32 ............................. GCCAGTGGGTAAGCAATCCCAACGAACTGGTC 616149 29 100.0 33 ............................. AATACTTCTGTTGCTGCAATTGCAGCAGAGTAC 616211 29 100.0 32 ............................. AGAAAATCAGACATCACTCCCCCCTCGCTTCA 616272 29 100.0 32 ............................. ACCCTGGTCCCAACACCGGCGACATCACCGAG 616333 29 100.0 32 ............................. CATTCAGCCTGGAGTTTGTCCGCTATGGAGAC 616394 29 100.0 32 ............................. GCGGGGAATGTAGTAGCAGCCGTGCGCCGATA 616455 29 100.0 33 ............................. GGAAGAGCACCGAGGTAGAGGTGGCCATCTGTC 616517 29 100.0 32 ............................. GAGGTAGGCCACCGGCCGAACCCCGAGGAGGA 616578 29 100.0 32 ............................. TGGCAGGGCGAGGTCGTGCTGCCGGTGATCGA 616639 29 96.6 32 .......T..................... CCAACAGGTAGCCAACGCGCCTGGCGATAGTC 616700 29 100.0 32 ............................. GCGAACCAGGTGCGCTACGGCGACATCGTCCG 616761 29 89.7 0 .G..........G..A............. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCTCGCATTATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGTGGACGTCTGGCTATCTGGCTACTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGTGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGTCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCAGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 100993-100725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFKQT010000015.1 Pseudomonas aeruginosa strain 15958 scaffold15.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 100992 28 100.0 32 ............................ AGTCCTCTGACCTGTACTCGTCGGGCAGGGAC 100932 28 100.0 32 ............................ AACGCGGCCCGAAGGCGCCGGTTGGTTCGTGC 100872 28 100.0 32 ............................ ATCCGGCCCGCTCACCGACGGCGGCGCGTCCT 100812 28 96.4 32 ............G............... ACGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 100752 28 75.0 0 .....................CTGACTT | ========== ====== ====== ====== ============================ ================================ ================== 5 28 94.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCAACCGCTTCCCGCACAACGCCACGCTGTACCTCGACAGGCGCCGCCCGGCCAGTTGTTCGAAAGCGCGAAAACACGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGTCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTATATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCACATCTCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGTGAGGCTCACCGCCCGTCCCGCTCATCACGAAATAGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : CCACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAATGGGATGGACCTCAAGCGCCGCCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGAGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //