Array 1 95337-92908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020347.1 Pasteurella multocida subsp. septica strain CIRMBP-0873 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95336 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 95276 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 95216 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 95156 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 95096 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 95036 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 94976 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 94916 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 94856 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 94796 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 94736 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 94676 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 94616 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 94556 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 94496 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 94436 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 94376 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 94315 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 94255 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 94195 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 94135 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 94075 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 94015 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 93955 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 93895 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 93835 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 93775 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 93715 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 93655 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 93595 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 93535 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 93475 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 93415 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 93355 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 93295 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 93235 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 93175 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 93115 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 93055 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 92995 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 92935 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 405741-405974 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020347.1 Pasteurella multocida subsp. septica strain CIRMBP-0873 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 405741 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 405807 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 405873 36 100.0 30 .................................... TTTGACGCCACTGGCGAGAACCGTCAGATA 405939 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : ACGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : TCTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 1870456-1868957 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020347.1 Pasteurella multocida subsp. septica strain CIRMBP-0873 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 1870455 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 1870395 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 1870335 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 1870275 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 1870215 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 1870155 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 1870095 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 1870035 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 1869975 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 1869915 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 1869855 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 1869795 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 1869735 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 1869675 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 1869615 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 1869555 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 1869495 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 1869435 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 1869375 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 1869315 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 1869255 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 1869195 28 96.4 124 ............G............... TCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACA 1869043 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 1868983 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 24 28 99.1 36 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //