Array 1 4409-3868 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFC01000468.1 Nocardiopsis sp. TNDT3 NODE_533_length_4378_cov_21.814983, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================================================================================================================================== ================== 4408 29 100.0 32 ............................. GCAACCGCGAAGGATTCTGGGAAGTCGCCCAC 4347 29 100.0 32 ............................. CGACCGACACCAGAATCACCGAAGGGACCGAC 4286 29 100.0 32 ............................. AGCTCCCCGGGCCAGTGGCCGACCATGTTCAG 4225 29 100.0 32 ............................. TCGGCCAGGGTGGCGCGGCGGAAGGTGCGCAC 4164 29 96.6 239 ..............T.............. TCCCGTGACATGTCACGCTTCGCGTTTTAGAGCCCTATATGATTCACTGCGCTGTTCCGAGCGCCTTGGCCCGATGGAAGGCGTAGAAGTCGGTGCTGTGCGGGCTCACGGCTGTACAAAGATTCCCGTCGAGAGCTTTGGCTGCCTGTGCCAGTGCAGGGGTAGCCTTGCTGCTCGGGTTTGCACGCACGAAGCCATACTCGTCGACGTAGACGAAACCGTGCTCGAAGAGTTCGTCG 3896 29 58.6 0 .AC.CGAG......G.....C...A.GTT | ========== ====== ====== ====== ============================= =============================================================================================================================================================================================================================================== ================== 6 29 92.5 74 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GAG # Right flank : CGCCATTTCCAAGTACTCGTCCAATTGGCAGAACTTGCGCGCTTTGACGTGAGCCGCACGGACCACGGCGGCGGGCAGCGTTCGGCCACACAAGGAGCATTCCAGGTATTCCGCATTTCCGAACTTTGCCTCTTTCAGCTCCTTGTGCTCCTTGCGGATTTTTGCCCATGTCTTGCCGTGGACGGTGTCCTTTTTGTAATCGATGCGTCCGGCCTTCTTCGGGTCAGGAAGCACGGTCATCGCGGAGGCTGGTTGTCCAGTGGTTTCGGAGGGCTCCACAGCCATGGGCTGGGTGCGGGGTTCACCGGTGAATCCGCTGAAGTCCAGAGCCTCTTGGCTGACGGTGATGGGTGCCCCCTGGTTGTTGCCGGACTGTAGGAGCGCGGCCACGACCTCGGCTCCCAAGAGATCACCGGACATGTTCTCCTGCTCCCAGACGAGCTCGAAACGGATCCGCTTGGGGTAGACGGCGGGGTTCTGCGCATCCTCGTCCGTCCAGA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2859-2402 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFC01000575.1 Nocardiopsis sp. TNDT3 NODE_664_length_3725_cov_17.734766, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2858 30 100.0 31 .............................. CCTCCCGTGTGAGCAGGTCGGCCGCGTCGAA 2797 30 100.0 31 .............................. GGGCGCCGTTAACCGAAACTCCGACATCATG 2736 30 96.7 31 .............................G CGCCCCACGGCTGGGAGCCGCCGGTGGGCGG 2675 30 96.7 31 .............................G CCTCCTGCGCCTGCTCGCGCAGCGCGGACAG 2614 30 100.0 31 .............................. TCGGCGCGACCGTGGGCAACCTGGTGACGGC 2553 30 93.3 31 ..G..........................A GCGCTGGGCGCATCCAGGTAGAGGACAAGGA 2492 30 96.7 31 ..G........................... GCTGACCGACAACGAGATTGGTTCGATGACC 2431 30 86.7 0 C.G.........................AG | ========== ====== ====== ====== ============================== =============================== ================== 8 30 96.3 31 GTTCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : AGCCGGTCGGTGTCCTCCTGGCCGTACTCCGCGATCCGCTCCCGGTCGAAGCCCTCCAGGGCCCGCCGGTAGTTCTCCCGCTTGTTGAGCACGGTGGACCAGGACAACCCGGCCTGCGCGCCCTCCAGGACGAGCATCTCGAACAGGTGCGCGTCGTCGCGGGAGGGCCTGCCCCACTCCTGGTCGTGGTAGGCCACCATCAGCTCGGAGGACCCCCGTGCCCAGGCACAGCGCTGGTCGGACATGGCAGCTCCTCGGGGCCGGCGGCGGTGGTCGCCTCCATGGTGCCGCAGGTCGGAGACAGTCCGGACGCGACCTCCGGTCGGGGTGCGTTGCGCAGGTGTCTCGTTGGTCGCGGTCCTGATCAGTAGGGCGAGTGCGCCGGTCCTGTGTGTGAAACCATGGGATGGTTCGGACTTGGCTCTGTGGGTGAAATGTCTGTTTCTCGGGAAGTTGGAAATTCGGCTGCTTGTCGCTGGTAATTTCCCAGGTCAGTGACT # Right flank : TGAGCAGGTTTTGCAGGAACTGAGAAGGGGCCGCCAGCGGAGAACGCTGGCGGCCCCTTTACGCGTGTTACCGGGAACGAACGCTGGTGAGGAACGCTGCCCACTCGGCTGAGGGCGCCTCCAGGTGACCGAGGTGACGGTTCTGCGTGTCACGGACGGCGGCACCGGTGCCGGTGTCCGCGACCTCGACGCAGTTGCCGCCGCTGGGCTGGCTGTAGCTCGACTTACGGAAGTTCAACAGGGTGGGAACTGAGGTCATGGTCTTCTACTCGATCATCTGTCGAAGGTGGTCGATCGTCTCGCCGGGACGGAGAGCGGCCAGGCGTAGGTGGTTCATCAGGTTTCTGTAGCGGGCGACCTCGTCGGGCTCCTCCAAGTAGATTCCATCGGTGTCCGTTTCCAAATAGACCACCGTGGGGTCGACCGATTCGGGGAACTCCAAGATGACGAAGGGACCTCCGCTTCCCGCGTTGAGCTGGGACGCGCGTGTCATCTGGAGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8176-6987 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFC01000794.1 Nocardiopsis sp. TNDT3 NODE_955_length_8145_cov_18.138735, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8175 29 100.0 32 ............................. AGAGGTCCGTCCGGGTCAGCAGGGTGTTTGCC 8114 29 96.6 32 ............................A GCACGCCGACGCAAAAGCCCTGGAGATCGGCC 8053 29 100.0 32 ............................. TCATCGAGGTCATCGAGACCCAGAGCGTCCAG 7992 29 100.0 32 ............................. GCCTGGTCGGTGATCGTGGTGGGGGCCAGCCC 7931 29 100.0 32 ............................. CACTGGGCCAGGGCGGCGCGGTGGGCTTCGGG 7870 29 100.0 32 ............................. GGGTGCGTCTCGGCGGACTCCCGGGCGTCCTG 7809 29 100.0 32 ............................. GGTCGGCGCCTGCGGGGCTGGAGTCGGGGCGG 7748 29 100.0 32 ............................. CTCCGCCCTTGTGGCTCCACTCTCCCCAAAAG 7687 29 100.0 32 ............................. CCTCCGAGCCACACGGCGGCCTCTTCGTGGCG 7626 29 100.0 32 ............................. CGGGTCGCGATCCGCGCGGAGGAGCGCCTGAT 7565 29 100.0 32 ............................. GACGCTGATCTCGGCGAAGGCCAGTTCGACGC 7504 29 100.0 32 ............................. TTCCTCCAGGAGCTCGCGCAACCGACTGCGCC 7443 29 100.0 32 ............................. GGGGAGGCGGGGATCTCCTATGAGGGCGGATC 7382 29 100.0 32 ............................. CAGCGGCCACACAGGGCGTCGCGAAGGGGGTG 7321 29 100.0 32 ............................. TGGCCCGGCATGTACGCCGACTCCCTGGAGGA 7260 29 100.0 32 ............................. CGTCCTTCGGCGTGGGTGGAGGTCACGGTGTC 7199 29 100.0 32 ............................. GCCGCCCTGGTGTCGTCGCTGCAGGGCTTGCA 7138 29 96.6 33 ....C........................ TCCACGTCCAGGATTGCCTGGAGGGCGGAAATG 7076 29 100.0 32 ............................. TACACCGCCGAGGGACACAACGCCCTTTTCGA 7015 29 93.1 0 ........................CC... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GAG # Right flank : AATGGCTAGCTATGCAGTCAAAAGAGAAGGGCCGCAGCGCGGGCAAGGTTTAGGGCCCGAACCAACCGGCTCGGGCCCTAAAAATGAATATGTACGGCCAAAGATCTAACCCGTTCCTCGCGCTGCACCGTTCGGCATGAGTCGGCTCGTAAAGCCTTCTCGGCACAGGCGGTCGTACGCCTCCACCACCTCCGACGGCACCGTCTGCTTGATGAGGAAACCCTGGTCCGGATAGATCAGAATCCGCTGAAGAGTCCCAACAAGCATGTCAATGACCAGGTGTGCGTCCCCGATGCCATCAACGTAGTCCTCGAAAGCCACAGGGTCAGACGCACTGATGACCTCAACATCGGGCCAGAACTTGCGTGCCGTCGCCCACGCGCGCCGCTCCTCGTAGGGCTTGCTGACCAGGAGGATCGAGTCGACCTCAACGCCTGCGCTCTCGATGACTGCGCGAGAGAAACAGATGTTCTCGCCCGTGTTGCGTGCGTTCGGCTCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3672-4249 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFC01000018.1 Nocardiopsis sp. TNDT3 NODE_22_length_7289_cov_17.458637, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3672 29 100.0 32 ............................. TCGTAGCGCACCGGGTCGCTGGAGGCGCCAGC 3733 29 100.0 32 ............................. CCGAATACGCGCGAACCGCACAACTACGCCTA 3794 29 100.0 32 ............................. CTATTCGAACGCCGTCGAACACCGACCGTGTG 3855 29 100.0 32 ............................. GCCGGGGCCCTCGTGGAACTCCGCAACGCCAC 3916 29 100.0 32 ............................. CGGGTCACGTCGTCGGGCTGGTTTCGGTTGGT 3977 29 100.0 32 ............................. TACGGCCAGCCGGTCGGTCCCTACCGCATCGC 4038 29 96.6 32 ........................G.... TGCGCGGCCACGTACCCGGCGAGGTCGATCAC 4099 29 96.6 32 ........................G.... GCGACCCCCGCTGACGCTCCCATCGTCGTCTC 4160 29 100.0 32 ............................. CGGGCCATCTGCATGGCGGCCTCTTCGGCGAC 4221 29 86.2 0 ........T.T.T...........G.... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGAGCCCCGCGCACGCGGGGATGAACCG # Left flank : GAACAGGGCTGCGGCCCTTCCGGAGTGAGCCCGGCCGGATCGTGTGGATGGGCGACGGGCAGGCGTGGGCGTACGTGTGGCCGGACGGCACCGTCACCGGCGGCGGTGATCGTGCCTTGGGTGAGGAACTGGGGCACGCCTATCGGATGCTGCGGGGCGCCGGGTTCCCGGGTCTGGAGAGCTTTGTCCTGGAAGCCGTCGCTGGTCAGGATTCCTGCCGGGTGGGGTGTGCGGCCCTGGAGCAGCACTGGGATCACTCCGTATCGCCCTGACTTTCTCGTCTTGCTCATCCTGCTCGTAGTGCTCTTCAGGGCTGTTTCTCCGGGCCGGGGGCCTGCGACCGCAGCCCAGGCATGGAAAGCCTGTGTGCCCGGCGCGGTAGTGGGGATGAGCGCCGCCGTGCACTGTGTGAGGATGTACGTCGAAGCCGGGAGTGCTCAGCATGTCCAGGGCCAAGGTTGCGGCGAGATAACGGCCCGCGTTGCCGCAGGTCGTTAAGC # Right flank : GGTGACCGTGAGTGGCCACTGTGCGTTCGTGGCGAAGCGTGGTGTCCTCGGGGCGGCGGACGCAGAGAACCCCACCTACCGAGAGGGAGGTGGGGTTTGTTCGCTGTGCCCGAGGTCAGACGGCGGGGTTCTCCGTCATGCCGAGCTGACCGAGGTCGAGGCGCTCGGCGCGGCGCGCGAGCAGGTACAGGTGCCCCGAGGCCCGGTCCATCTCGCGGATGAGCGCGAACCCCTGTCCCTGGTAGTACTTCGCCAGCTCGGGGAAGAAGCACCCTTGCCGCACCCACTGGCGGCCCTCTCGCGCCGCCCGGTCCACCGCCCACAGGTCGATCAGGGTGCCCGGCTTGTGCTTCCGGTAGTCGGGGTGGGTGCAGGTGGAGAACAGGTACAGGCTCGGCTCGTCGGCCTCGTCGGGGGTCCAGTCCTTCGGCGGCGCGTGCTCGGTCACCGTCGTGCACCCGACGACCCGGTCTTCGTCTTCGAGCACCCACATGAACCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGATCCCCGCGCCAGCGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4408-4134 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFC01000381.1 Nocardiopsis sp. TNDT3 NODE_434_length_7139_cov_18.191904, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4407 30 86.7 31 CCT......C.................... CCAGCTCCTGCCCAAGAATCGTCGCGCCACC 4346 30 100.0 31 .............................. ACCCGACGGGCCCGCACCTGCGTCTTCGCCT 4285 30 83.3 31 ...........C.G..T...........AT CGTCGGCGCGCGCCTTCATCGCGGCCGCCAG 4224 30 96.7 31 .............................A TGTTCGGCCGGGTGGAGATCTCCAAGCCGAC 4163 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 92.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGCCGTCTACGGCGGCGAGGTCACCTTCGTTACTCGCGGACGTCGTCACCAACGGGCTGCCGCGATCGTTCCGGCCGACATGGTCGATCATTACGAGGAGCTGTTGGACGAGCGTGACGCCCGTATCGCCGCCGAGCGCTTGGCCGACATCGAAGCGGGACGATCGACGGTCGTTCCCTTCGATGAAGCGATGCGCCAGCTCGGGCTGACCGAAGACGAGCTGGGCCGGTGAACGAGCCCTACGCTGTTTCATTTGCTGACCCAGCGCTTAAGCAGCTCGGCAAGCTCGACAAACCGATCCGACTTCGAATCGCGCGCAAGGTCCGAGAACTGGCAGTGGACCCACGCCCGGCCGGGAGTATCCCGCTCAAGGGAGACACCGAATCCTGGCGCATCCGGGTAGGCGACTACCGGATCGTGTACACGATTTACGACGGTCGGTTGGTGGTCCTTGTGCTGAGTGTCGCTCATCGCCGTGAGGTCTACCGGGACCTGTGACA # Right flank : GGCGGCCCTCAGGCCCACCGAGTGCAGCGTCAGGCGCTCTCCTCGCTCAGGGTGCCGCCGAAGCTCCTGCGCCGTTCCGCGTAGGTGTTGACGGCGCGCACCAGGTGGGGGCGGTCGAAGTCGGGCCAGAGGGCGTCCTCGAAGACGAGTTCGGCGTAGGCGGTGTGCCAGGGCAGGAAGTTGCTGGTGCGCTGCTCGCCAGCGGTTCTGATCAGGAGGTCCACGTCGGGCAGGGTGGGATCGTAGAGGTACCCGGCGAGGTCGGACTCCGCCATGCGCGTCGGGTCCAGCCGCCCCGAGAGCGCCTCGGCCGCCGCGTGTTTGACCGCGTCCACCATCTCCTGGCGGCCTCCGTAGTCCAGGCAGAACGTGAGCGTCACCCCGCTGTTGCCCGCCGTCAGCTCCTCGGCCCACTCCAGCCGTTCGCGGAGCGCCGCCTCGATCCTGGTGCGGCGGCCGTACCAGCGCATCCGGACGCCCCGGGCGTGCAGGCGCCCGGT # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5288-5075 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFC01000381.1 Nocardiopsis sp. TNDT3 NODE_434_length_7139_cov_18.191904, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5287 30 100.0 31 .............................. AGTGACAGGGCGTTGGCGCCCTTCCACCCAA 5226 30 100.0 31 .............................. TCGACACGGGTCATGAAGTCGATGCCCCACC 5165 30 96.7 31 .............................A CCGGCCTGTACTACGTCACCCACCACACCGA 5104 30 93.3 0 ..........................T.T. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 97.5 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : TTCACCGACTTCCGCGCGGACATCCCCAAGATCGACGTTCCCACGCTGATCCTGCACGGTACCGCGGACAACATCCTGCCGATCGACGCCACCGGCCGCGCGTTCTCGGCGCTGCTGCCCTCGGCGGACTACGTCGAGATCGAGGGTGCGCCGCACGGTCTGCTGTGGACCCATGCGGAGGAGGTCACCGAGGCCCTGCTGGCCTTCCTGGCCAAGTAGGGCGGGAGGCTGTCAGGGGGCATGCCGTGCCCCACGGTCCCGGGAGCGCATCAACGGGGGCGCTCCTGGGACCGTGGTTGTCTCAGAACTGATAAACCGCGTTATGTTGCTGTGGGCGAGGTGGCTCTGGGGTGTCGCGGCGACGCGGGTCGTTTCAGGCTGCGTAACCTGTTGACGTTTAAGGGTTTTCGCGTCCTATGGGATTTTGGTGGCTGGTGTCTGTTTTTCGGGAAGTTGGAAATTCGGCTGCTTGTCGCTGGTAAGTTCCCAGGTCGTTGACT # Right flank : GGATCCAAGCTTTTGTCGTCTCTCGTCAGGAAGGCAAGGAACCACGCCAACCACGCCAGGTTGGCGTCTTTTTAGGGCATGATGGAGAACATGAACGCTGACACCAGCCATATGCACGAACTGTCTGTGACCGAGGCTCGCGATCACTTCTCCGAACGCGTCAACCGCGCCGTCTACGGCGGCGAGGTCACCTTCGTTACTCGCGGACGTCGTCACCAACGGGCTGCCGCGATCGTTCCGGCCGACATGGTCGATCATTACGAGGAGCTGTTGGACGAGCGTGACGCCCGTATCGCCGCCGAGCGCTTGGCCGACATCGAAGCGGGACGATCGACGGTCGTTCCCTTCGATGAAGCGATGCGCCAGCTCGGGCTGACCGAAGACGAGCTGGGCCGGTGAACGAGCCCTACGCTGTTTCATTTGCTGACCCAGCGCTTAAGCAGCTCGGCAAGCTCGACAAACCGATCCGACTTCGAATCGCGCGCAAGGTCCGAGAACTG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1960-3578 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPFC01000386.1 Nocardiopsis sp. TNDT3 NODE_439_length_5596_cov_16.403324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1960 30 100.0 31 .............................. TGGGGCAGCGGCGCCACGTGGTGCCACGCGG 2021 30 100.0 31 .............................. CGGCCTCCTCGCGACCTCCTCCCGCGTCAAC 2082 30 100.0 31 .............................. TGAGGCGCCAGTGGGCCCTGGCGACGCGCCT 2143 30 96.7 31 .............................C GCCACCGGATCGCCTACAAGCCGCCCGCCCC 2204 30 96.7 31 .............................A GGGAGATGTCGGCGACCAGGTCGGCCACGCC 2265 30 96.7 31 .............................T CCTAGTGCCACGGAGTGTGGGCCAAGAACAC 2326 30 100.0 31 .............................. GCTGCCGGTCGTAGCTTTCGTTCGGTGCGAA 2387 30 96.7 31 .............................C GGCTCGGCCGGGGTCGGGTCGGCGGCCGGGG 2448 30 100.0 31 .............................. CCCCTGCGGGGGCGGTTGGAGCGGGCGAGGT 2509 30 100.0 31 .............................. ACCCGGTCCGGCTGCGGCCCCAGTGGCTGCT 2570 30 96.7 31 .............................A CCGCGCGGTGGAACTGCTGCCCCTGGACGTG 2631 30 96.7 31 .............................A GGGCTTGGTCGGTGAGGTGGCTCGGGGTCCA 2692 30 96.7 31 .............................C GTGCGGCCCGAACCGGCGGCGTCACAGGTGC 2753 30 100.0 31 .............................. TGTGGTCGCACGCCCTCACGGATCAGCTGAT 2814 30 96.7 31 .............................C GAGGCCCTTCCGGACCTGCTGGTGCCCGGCG 2875 30 100.0 32 .............................. GGGGGCAAGTCTTTCGTCACCCCGGGCCCCAG 2937 30 96.7 31 .............................T CTCCCTGGCCGCCCAGGAGGCTCACGAGGTG 2998 30 100.0 31 .............................. GAGGTCCCCGCGAGGATCACGTCACCCTCCG 3059 30 96.7 31 .............................T CGGGAGAGAAGGCGGACGGTAGACGACCCGG 3120 30 100.0 31 .............................. GTCCCAACGCGGGCCGCCGGTGGCAGTTCGT 3181 30 100.0 31 .............................. AAAGATAGTTGCTGACCTGCATGTGTGATGT 3242 30 100.0 32 .............................. GATGGCACCCCCACACCGCGTGGACCCGCCAC 3304 30 93.3 31 ..........A..................C CCGACCAGACGCCGGAGCCGGAGAAGCCGAA 3365 30 100.0 31 .............................. AAAAGGCGCAGGTCGTGATCCCGCTCCCGGA 3426 30 96.7 31 .............................C CCGACATGGGCGTCACCGAGGAGGGCTGCGA 3487 30 96.7 31 .............................C AGGGGCTCGCGAACAAGAGCCACTCAGCGTG 3548 30 96.7 0 .........................G.... | G [3571] ========== ====== ====== ====== ============================== ================================ ================== 27 30 98.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCCGCCGCGCCAGCAGCGCGGTGGTCAGCCCGACGATGCCGCCTCCCACCACCGCGACGTCGACCTCCACGTCCTGGCTCAGACGGGGAAACTCCGGTCGGTTCTCCACGACCGTCCACACGCTCCTGTGCTGCATCCTCTGCCCCTCCCGATCAGGTCCAGACGCCGTCGGCCCCCGTGCGACGGACAGCGCCTACACCAGCTACCCAGCGTTCCCGGTCGCTACCGCCGGAGCCTCTGGTCGGGGCATGGACCCGCGCCGCTTCCAGAGCCGGGGGAGGGGTGCGTGGCGAACACGGGCTGGGCGAAAGAAGAGTGGTGGTGTGCGGTGGTTCCCCGGCAGAGGGGGATAGCGGTCTGTAGGTTGGGTCTTCTGGAGCTACAGCGTTTTGGTGGTTGGTGAGCTTTTGGTTCTCTTGGGGCCTGTGGTGCGTGTGTCTGTTTCTGAAGAAGTTGGAAATTCGGCTGCTTGCCGCTGGTAAGTTCGCAGGTCATTGCCT # Right flank : GATCCCCACTGACTTCCGCGTTCGTCGTCCCCGGAAAACCGCTCGACGGCTTCGGGGCGACCTGACACAGTGGCGCACCATGACGGGTTCCGAACTTGTGACCGCCGCGGACGTGCGGCTCATGCAGGGGCTGGCGCAGCGCGTCACCGCGATCCGCCCCGACCTGGTGAACAGCGACGCCTCGTTCGGCGAGCTGGCCTGGAACTGGGGCCGGGGGCACGCCAGCGACGGCGCGACCTGGCCGCGTCGGCTGTGGTTCTCCGGCGGGGAACTGGTCGCGTGGGGCTGGCTCCGCCTTCCGCGCCGGGTGAGGCTGAGCGACGGCTCGGTCAGGGACGTCACCGGCGCCTACCTGATGCACCAGGTCCACCCCGACCACGCCGGGCTGGTCGACGAGGTGATCGCCTGGTACGACGCCACGGCGGCGGGCCTCGAACGCACGGTGCTGCCCAGCGCCGCCGACGGGTTCGCCCTGGAACGGTGGGCGGCGCACGGCTACG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //