Array 1 81817-81476 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024934.1 Thermus thermophilus strain AA3-7 plasmid pAA3-7b, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 81816 36 100.0 39 .................................... GAGGTGCGAGATGCGTAACTGGCGCGCGGCTTGGTACGA 81741 36 100.0 38 .................................... TGAGCCTGAGCCTGTACCGAAGTCTTCTTTGCCATAGT 81667 36 100.0 43 .................................... CCCTTGCCGGAGGCGTAGGCCTTGAGCGTAGCTTTCACCCCTC 81588 36 100.0 41 .................................... TACCTAAGCCTTACCATGGGTAGCGATCCCAATACTCCTCC 81511 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== =========================================== ================== 5 36 98.9 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGGGGTTTTCCCGTCGGGGGACGGGGCATGGAGCGTGCACCCGTCCAAAAATTGGGCCGCCAGCCCCTTGGGGGGCATGGGCACGGGCCAGCCCGTAGGCTGAAGGTGGCCTTTCTGGGGCGGGGGGAGTGCACGCCCTTTTACCTTCGGGGCTAGGGGGTACTTGACACGACGGAACAGGCGTTTTTCACGCTTTCACAAAGCGAAGTAAGTTGGAAAAGGGGCTTTTTGGGGCAATTTTGGACGGGGTGCACCGTTTCAGCGAGATGCTATAATGCCCTTGTCCGGACCACCGGACGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCACTTTTTCTTTTCATCGCCCCTTCCTCTTGTGGCTTTGCATCGGTGTAAATCCTCAAAAACCCCTGTTATTCGCCGTGTGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTAGCGGCGCTGTCCAGGACGGAGTTCTTTGGGGGGTACA # Right flank : TGTCTTGCTTGTCAAGCGACCTCTTGGTGCGGCTGGGTCGCGTAGTGCTCCCTGAGCCGTCCCATCGTTCGCGCAACAGCTTGTGCGCTACGGCCAAAACGCCTGCCTCGCCGCCCGGAGGGACAAGAACCCCCTTTGGGGGCCCTATCTTCGCGAAAGCTACGTTTCGCGAAAAAGAGACTCCACTGCCCCACCCCGCAGTTTCTTGGAAATCCACCGGCACTAGAAAGGACGGAGAAGCCTTTCGGGTACCCACCCCTTCCCAAGGACCCGCGGCCCTCCCTTCAAAAGGGTGGGGTTCCTGCCGGTTATCCGGCAGGAACCCCAGGCGACCCGGAGCCTCTTACCCTACGGCTTCTTGGACGCTGCGGGCGCGGGATGGGCCGCCTTCAGGAACACCAGGCTCCCGTCCTTCCCCAAGGCCACATGCCGGTTCTTGAGGAGGACGCCCAGGCTATAAACCCGCTTTCCCACCTTGACGACGAAGGCTTCCAGCTTGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 97582-96510 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024934.1 Thermus thermophilus strain AA3-7 plasmid pAA3-7b, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97581 29 100.0 32 ............................. GAAGCCGCCGAGCGCCGCGTGGTCTCCAAGAC 97520 29 100.0 33 ............................. CTGGCCGTTGCCCGGGCGGCTAGGGAGGCTGCC 97458 29 100.0 32 ............................. AAGGCCCTTTCCTCCTCGCTCCAGGCCGCCAT 97397 29 100.0 32 ............................. TCGGCAAGGCGGTTCGCGTCCCCAGTGGAGTC 97336 29 100.0 32 ............................. GTGGACGCCCAGCTCATGCGGGGACCGGACAC 97275 29 100.0 33 ............................. TCCATGCCGTTCACCAGTAGCGCGCTCATGCCC 97213 29 100.0 33 ............................. ACCTCGGGACGGAGGGCCTGGGCCAGGCTGCCC 97151 29 100.0 33 ............................. CACTGGTGGCATGTGTTGCCCGGGGCGCTCCGC 97089 29 100.0 33 ............................. AGGCCCTATCCGCCGTGGGGAAGGACTGGAGGC 97027 29 100.0 32 ............................. TCCTGGGAGGCCCCCCAGGACCTCGCGGACGA 96966 29 100.0 32 ............................. CTTTCCTCACATTCTGGCGGAAAGCTTTGCTG 96905 29 100.0 32 ............................. AATCGCCTTGCGGGTAGAGGCGTCCGGCACAA 96844 29 100.0 32 ............................. CAGGCAGCGTAAGACGCAGCCCGTCACCTGGC 96783 29 100.0 33 ............................. GAGGGAACCATGAAGCAGGTTAGCACGCAGGCA 96721 29 96.6 32 .......T..................... TCCGGGGCCTCCTCCCCACCTTCTAGGGGCTC 96660 29 89.7 32 .............AC......G....... GGGAGCGCCCGGCACCTCGCGGCCTTCAAGGT 96599 29 93.1 32 .............AC.............. ATCTCCGATCTAGAGGCTCAGGGGGTGTTCTG 96538 29 86.2 0 ........T....CC..........G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.1 32 GTAGTCCCCACGCGTGTGGGGATGGACCG # Left flank : AGACCCCACCCGTCCTGGGGGCCTATGGGACCTCGAGGGCGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTGCCGAGGAGCCTGAGGGGTGATCTTACCCGTTTTCTGATAGAGGTGGACACCGGGGTCTTCGTGGGCCGGATCAGCGCCACGGTGCGGGAACTCCTCTGGGAGCGGGCCGTGGAGAAGGCCGAGGGCGGCCGGGTGGCCCTGGCCTACCGGACGAACAACGAGCAGGGCTTCGCCTTGCGGCTTCACGGCTACCCGGACCGCTTCCTGCGGGATTTTGATGGTATAGTGCTGGTGAGCGTTCGGAACGCCGAGGCGGTGCGGAAGGCGGAGAAGCTGTCTAGGCAAGTTGAGAGGTACAAAAAACGGCTTGCCAAGGGTTCCGAAGGGGATCTTGAAAGCCAAAGTCCGTAACTGCTCCCGAATAGACACATAAACGGGGGTGAGCGGGCGTTTTTGCCGTCCTGGTCATGT # Right flank : GCGCTAGAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGCCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTGTCGGCCCGCACCTCCACCTCTCCCCCGTCCAGGGTCTCCACCTTTCCTTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTGATCCAGGAGCCTGGCATGGAGCGGGGGGCGAGCTGGCCGTTTCGCAGGTAGGCCCTTTCAGGGAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCTTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTCTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGAGGAAGGCCCTCCGCCTTGAGGAAGGCGGAGAGGGCCCCGATCTGGTAGAGCACGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCGTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 107448-108768 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024934.1 Thermus thermophilus strain AA3-7 plasmid pAA3-7b, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 107448 29 100.0 33 ............................. GACGCCGCGTACAACCCGGTCAGGGGACCGGGC 107510 29 100.0 33 ............................. GGTTTCTAGACGCCCCTCCAATCGGATGATGGC 107572 29 100.0 33 ............................. GAGGAGGGTATCCACGGCGGCGAGAACGGTCCC 107634 29 100.0 32 ............................. ACCCCCTCCAGCACCTCCGGCTCCACCTCCCA 107695 29 100.0 33 ............................. AGGATCCAGCCCGAGTTGTTCGTCACGCTCACC 107757 29 100.0 32 ............................. GTGAGCCCGCTTTCGTCGTCCCGCACCACAGC 107818 29 100.0 32 ............................. GACTTGCGGCGGGCCGCGGGGGAAGTGAAGTA 107879 29 100.0 32 ............................. AGGAGGACCGTCCCGTGGCCAAGGCCGTGGAC 107940 29 100.0 32 ............................. GCTTTCCGCCCGCACCCGGTGCCCGGGGCGGA 108001 29 100.0 33 ............................. ACGAGGTAGGGCCCGCGCTTGGGCCGGATGACC 108063 29 100.0 34 ............................. CGACTTCTTCAAGGTGGAAACCGGAGGGGGAAGT 108126 29 100.0 33 ............................. TAGAGGGCTTGCGCCCACCCCTCCCTGGAGTCC 108188 29 100.0 32 ............................. GCGGAACTCCTTCTCCGGGGCGAACCCTACGC 108249 29 100.0 33 ............................. GGAGACGTTCTCCTTCGCCCGGGCCACCACGTC 108311 29 96.6 34 ............................C AGGCCCTCCCCGCCGCATGCGTGGCAGTCCTGCC 108374 29 100.0 32 ............................. ACATCTGCCGCGTCTACGCCCAGGATCCCACC 108435 29 100.0 32 ............................. GTAGGGGCCCAGTACGACCCAGCCGCCCGGGC 108496 29 100.0 32 ............................. ACGTAGGGCCACTCCACCACCCTGGTCCGGTC 108557 29 96.6 32 ............................C CCACCCGTAACCGTTGTAGTGGGCGTTGCAGT 108618 29 100.0 32 ............................. TCCCTACGGGGCGCCCTGTGTGGTCCGGGGGC 108679 29 100.0 32 ............................. TCCTGAACGAAGGGCGGGCCTTTGTGGACCAG 108740 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 22 29 99.7 33 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GCATGCGGGCGAGTTTGTCCAAGGCCAGGCGGTACTGGCGCGTGGGGGCCTGGTGGTAGAGGAGCCTTCCCGCGGCGAAGAGGGCCAGGGCCTCTATAGGGTGGAGGGAAGGGGGGCGGTCGGCGATGCGGTAGAGCCCCCGGGCCAGGCGTTCCACGGGAAAGCCAAGGTCAAGAAGGGCCTCGAGGTCCCGCTCCACCGTGCGCTCGCTCACGCCGAAGCGGCGGGCGAGTTCCCCCACCCGCATGGGCCTGAGCTTCAAGGCCTCGGCCATCTGCAGGAGGCGGGCGCTTTTGGCCTCTTGTCCCATGTGGCCATTCTAAGCAAGCCGTTCGGGCTAGGGTGTGATTTTTGACCATGCTATACTGGGACCAGCGCCCACCCTGGCCTTTTCCCCTCCCCCGCTCGGGCGCTGGGGAACTTGACAGAAAAACCTGCAATCCTTCCCAAATAGACACATAAAGGGGGGTGAGCGGGCATTTTTGCCGTCCTGGTCATGT # Right flank : GGCTACCTCGTATTCCTGGACTCAAAACTTGCACTTATTCACCGCGGGCATGAGTATGCTTGGGGACCACTTGAAGAGGGCTACTGGTTTCCCCTCTTATGAGGGGTGCCATGAGACCAGTAGCCCTATCCCTACTTTGGACCATCCTGGCCCTCATGCCAACCCCCCACCTGCGGGAATCCTTGAAGGCCCTGTTGTTCCTTTTCCTCACCGGTCACGGCAAGGCTAGACCCCAGCACAGCAAGACCAAGTCCCCCTCCGCCCTCTCCCGCTTCCTCAACCGCTACCCCTGGCCCACCCGCGCCCTCATCCGCCTGGCCCGCGAGGAGGCCCAGAAAGCCCTGGACCGGGCCAGGCGGAGAAAGGGCCCCAAGCCCCGCCTCCTGGTGGTCCTGGACCTGGTCACCCTGGAGAAGCGGGGCCGCTTTCCGGCCCTACCCCTCTCCTTCTTTCACGGCAAGTGGGGCCTCCACCTCGTGGTCCTTTACCTCGTCTACGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //